Experiment: Light Dark first sampling rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0589 and Synpcc7942_0590 are separated by 46 nucleotides Synpcc7942_0590 and Synpcc7942_0591 are separated by 4 nucleotides Synpcc7942_0591 and pfkA are separated by 13 nucleotides
Synpcc7942_0589: Synpcc7942_0589 - Fe-S-cluster oxidoreductase-like, at 577,911 to 578,573
_0589
Synpcc7942_0590: Synpcc7942_0590 - membrane protein-like, at 578,620 to 578,967
_0590
Synpcc7942_0591: Synpcc7942_0591 - membrane protein-like, at 578,972 to 579,298
_0591
Synpcc7942_0592: pfkA - 6-phosphofructokinase, at 579,312 to 580,394
pfkA
Position (kb) 578
579
580 Strain fitness (log2 ratio) -2
-1
0
1 at 578.063 kb on - strand, within Synpcc7942_0589 at 578.090 kb on - strand, within Synpcc7942_0589 at 578.165 kb on + strand, within Synpcc7942_0589 at 578.173 kb on - strand, within Synpcc7942_0589 at 578.173 kb on - strand, within Synpcc7942_0589 at 578.181 kb on + strand, within Synpcc7942_0589 at 578.181 kb on + strand, within Synpcc7942_0589 at 578.204 kb on - strand, within Synpcc7942_0589 at 578.555 kb on + strand at 578.555 kb on + strand at 578.555 kb on + strand at 578.575 kb on + strand at 578.575 kb on + strand at 578.575 kb on - strand at 578.666 kb on - strand, within Synpcc7942_0590 at 578.679 kb on + strand, within Synpcc7942_0590 at 578.679 kb on + strand, within Synpcc7942_0590 at 578.693 kb on - strand, within Synpcc7942_0590 at 578.759 kb on - strand, within Synpcc7942_0590 at 578.759 kb on - strand, within Synpcc7942_0590 at 578.763 kb on + strand, within Synpcc7942_0590 at 578.787 kb on + strand, within Synpcc7942_0590 at 578.787 kb on + strand, within Synpcc7942_0590 at 578.795 kb on - strand, within Synpcc7942_0590 at 578.797 kb on + strand, within Synpcc7942_0590 at 578.818 kb on + strand, within Synpcc7942_0590 at 578.818 kb on + strand, within Synpcc7942_0590 at 578.826 kb on - strand, within Synpcc7942_0590 at 578.826 kb on - strand, within Synpcc7942_0590 at 578.888 kb on + strand, within Synpcc7942_0590 at 578.888 kb on + strand, within Synpcc7942_0590 at 578.916 kb on + strand, within Synpcc7942_0590 at 578.932 kb on + strand, within Synpcc7942_0590 at 578.932 kb on + strand, within Synpcc7942_0590 at 578.948 kb on + strand at 578.970 kb on - strand at 579.066 kb on + strand, within Synpcc7942_0591 at 579.136 kb on + strand, within Synpcc7942_0591 at 579.137 kb on + strand, within Synpcc7942_0591 at 579.144 kb on - strand, within Synpcc7942_0591 at 579.144 kb on - strand, within Synpcc7942_0591 at 579.158 kb on + strand, within Synpcc7942_0591 at 579.216 kb on + strand, within Synpcc7942_0591 at 579.237 kb on + strand, within Synpcc7942_0591 at 579.285 kb on + strand at 579.292 kb on + strand at 579.292 kb on + strand at 579.293 kb on + strand at 579.294 kb on - strand at 579.294 kb on - strand at 579.300 kb on - strand at 579.304 kb on + strand at 579.326 kb on + strand at 579.328 kb on + strand at 579.331 kb on + strand at 579.354 kb on + strand at 579.358 kb on - strand at 579.387 kb on + strand at 579.394 kb on - strand at 579.411 kb on - strand at 579.419 kb on + strand at 579.427 kb on - strand, within pfkA at 579.427 kb on - strand, within pfkA at 579.427 kb on - strand, within pfkA at 579.476 kb on + strand, within pfkA at 579.483 kb on - strand, within pfkA at 579.513 kb on + strand, within pfkA at 579.525 kb on + strand, within pfkA at 579.531 kb on + strand, within pfkA at 579.544 kb on + strand, within pfkA at 579.575 kb on - strand, within pfkA at 579.577 kb on - strand, within pfkA at 579.599 kb on - strand, within pfkA at 579.616 kb on + strand, within pfkA at 579.619 kb on - strand, within pfkA at 579.634 kb on + strand, within pfkA at 579.634 kb on + strand, within pfkA at 579.642 kb on - strand, within pfkA at 579.645 kb on + strand, within pfkA at 579.671 kb on + strand, within pfkA at 579.685 kb on - strand, within pfkA at 579.700 kb on - strand, within pfkA at 579.703 kb on + strand, within pfkA at 579.732 kb on - strand, within pfkA at 579.752 kb on + strand, within pfkA at 579.755 kb on + strand, within pfkA at 579.763 kb on - strand, within pfkA at 579.804 kb on + strand at 579.872 kb on - strand, within pfkA at 579.873 kb on - strand, within pfkA at 579.873 kb on - strand, within pfkA at 579.902 kb on + strand, within pfkA at 579.902 kb on + strand, within pfkA at 579.910 kb on - strand, within pfkA at 579.910 kb on - strand, within pfkA at 579.910 kb on - strand, within pfkA at 579.921 kb on - strand, within pfkA at 579.940 kb on - strand, within pfkA at 579.942 kb on + strand, within pfkA at 579.961 kb on - strand, within pfkA at 579.966 kb on + strand, within pfkA at 579.988 kb on - strand, within pfkA at 580.091 kb on - strand, within pfkA at 580.092 kb on + strand, within pfkA at 580.115 kb on - strand, within pfkA at 580.172 kb on - strand, within pfkA at 580.174 kb on + strand, within pfkA at 580.196 kb on + strand, within pfkA at 580.196 kb on + strand, within pfkA at 580.196 kb on + strand, within pfkA at 580.204 kb on - strand, within pfkA at 580.204 kb on - strand, within pfkA at 580.204 kb on - strand, within pfkA at 580.204 kb on - strand, within pfkA at 580.204 kb on - strand, within pfkA at 580.204 kb on - strand, within pfkA at 580.228 kb on - strand, within pfkA at 580.228 kb on - strand, within pfkA at 580.241 kb on - strand, within pfkA at 580.246 kb on + strand, within pfkA at 580.256 kb on + strand, within pfkA at 580.257 kb on + strand, within pfkA at 580.257 kb on + strand, within pfkA at 580.257 kb on + strand, within pfkA at 580.257 kb on + strand, within pfkA at 580.264 kb on - strand, within pfkA at 580.266 kb on + strand, within pfkA
Per-strain Table
Position Strand Gene LocusTag Fraction Light Dark first sampling rep1 remove 578,063 - Synpcc7942_0589 0.23 -0.4 578,090 - Synpcc7942_0589 0.27 -1.1 578,165 + Synpcc7942_0589 0.38 +0.1 578,173 - Synpcc7942_0589 0.40 -1.0 578,173 - Synpcc7942_0589 0.40 +0.3 578,181 + Synpcc7942_0589 0.41 -0.1 578,181 + Synpcc7942_0589 0.41 +0.3 578,204 - Synpcc7942_0589 0.44 -0.2 578,555 + -0.1 578,555 + +0.4 578,555 + +0.2 578,575 + -0.2 578,575 + -0.4 578,575 - -1.2 578,666 - Synpcc7942_0590 0.13 +0.2 578,679 + Synpcc7942_0590 0.17 +1.5 578,679 + Synpcc7942_0590 0.17 +0.1 578,693 - Synpcc7942_0590 0.21 +0.0 578,759 - Synpcc7942_0590 0.40 +0.4 578,759 - Synpcc7942_0590 0.40 -0.2 578,763 + Synpcc7942_0590 0.41 -0.7 578,787 + Synpcc7942_0590 0.48 +0.1 578,787 + Synpcc7942_0590 0.48 -0.2 578,795 - Synpcc7942_0590 0.50 -0.4 578,797 + Synpcc7942_0590 0.51 -0.7 578,818 + Synpcc7942_0590 0.57 -2.1 578,818 + Synpcc7942_0590 0.57 +0.6 578,826 - Synpcc7942_0590 0.59 -0.8 578,826 - Synpcc7942_0590 0.59 -0.4 578,888 + Synpcc7942_0590 0.77 +0.5 578,888 + Synpcc7942_0590 0.77 -0.8 578,916 + Synpcc7942_0590 0.85 +1.1 578,932 + Synpcc7942_0590 0.90 +0.5 578,932 + Synpcc7942_0590 0.90 +0.2 578,948 + -0.9 578,970 - -1.1 579,066 + Synpcc7942_0591 0.29 -0.9 579,136 + Synpcc7942_0591 0.50 +0.4 579,137 + Synpcc7942_0591 0.50 -1.0 579,144 - Synpcc7942_0591 0.53 -0.6 579,144 - Synpcc7942_0591 0.53 +0.1 579,158 + Synpcc7942_0591 0.57 -2.2 579,216 + Synpcc7942_0591 0.75 -1.0 579,237 + Synpcc7942_0591 0.81 -0.6 579,285 + -0.0 579,292 + +0.3 579,292 + -1.4 579,293 + +0.3 579,294 - +0.5 579,294 - -0.1 579,300 - -0.0 579,304 + -0.8 579,326 + -0.0 579,328 + +0.1 579,331 + -1.5 579,354 + -0.4 579,358 - -0.1 579,387 + +0.5 579,394 - -0.5 579,411 - +0.3 579,419 + -0.3 579,427 - pfkA Synpcc7942_0592 0.11 -0.2 579,427 - pfkA Synpcc7942_0592 0.11 +0.4 579,427 - pfkA Synpcc7942_0592 0.11 +0.2 579,476 + pfkA Synpcc7942_0592 0.15 -0.4 579,483 - pfkA Synpcc7942_0592 0.16 +0.2 579,513 + pfkA Synpcc7942_0592 0.19 -0.9 579,525 + pfkA Synpcc7942_0592 0.20 +0.2 579,531 + pfkA Synpcc7942_0592 0.20 -1.3 579,544 + pfkA Synpcc7942_0592 0.21 -1.1 579,575 - pfkA Synpcc7942_0592 0.24 +1.2 579,577 - pfkA Synpcc7942_0592 0.24 -0.4 579,599 - pfkA Synpcc7942_0592 0.27 -0.9 579,616 + pfkA Synpcc7942_0592 0.28 +0.8 579,619 - pfkA Synpcc7942_0592 0.28 -0.0 579,634 + pfkA Synpcc7942_0592 0.30 -0.2 579,634 + pfkA Synpcc7942_0592 0.30 -1.8 579,642 - pfkA Synpcc7942_0592 0.30 -0.5 579,645 + pfkA Synpcc7942_0592 0.31 +0.1 579,671 + pfkA Synpcc7942_0592 0.33 -0.4 579,685 - pfkA Synpcc7942_0592 0.34 +0.6 579,700 - pfkA Synpcc7942_0592 0.36 +0.8 579,703 + pfkA Synpcc7942_0592 0.36 +0.6 579,732 - pfkA Synpcc7942_0592 0.39 +1.4 579,752 + pfkA Synpcc7942_0592 0.41 -0.4 579,755 + pfkA Synpcc7942_0592 0.41 -0.9 579,763 - pfkA Synpcc7942_0592 0.42 +1.6 579,804 + +0.1 579,872 - pfkA Synpcc7942_0592 0.52 -2.3 579,873 - pfkA Synpcc7942_0592 0.52 +0.3 579,873 - pfkA Synpcc7942_0592 0.52 +0.5 579,902 + pfkA Synpcc7942_0592 0.54 -1.8 579,902 + pfkA Synpcc7942_0592 0.54 -0.2 579,910 - pfkA Synpcc7942_0592 0.55 +0.6 579,910 - pfkA Synpcc7942_0592 0.55 +0.4 579,910 - pfkA Synpcc7942_0592 0.55 -0.1 579,921 - pfkA Synpcc7942_0592 0.56 -0.1 579,940 - pfkA Synpcc7942_0592 0.58 +1.3 579,942 + pfkA Synpcc7942_0592 0.58 -0.9 579,961 - pfkA Synpcc7942_0592 0.60 +0.9 579,966 + pfkA Synpcc7942_0592 0.60 +0.9 579,988 - pfkA Synpcc7942_0592 0.62 -0.0 580,091 - pfkA Synpcc7942_0592 0.72 -0.4 580,092 + pfkA Synpcc7942_0592 0.72 -1.7 580,115 - pfkA Synpcc7942_0592 0.74 -0.4 580,172 - pfkA Synpcc7942_0592 0.79 -0.8 580,174 + pfkA Synpcc7942_0592 0.80 -0.2 580,196 + pfkA Synpcc7942_0592 0.82 +1.6 580,196 + pfkA Synpcc7942_0592 0.82 +0.6 580,196 + pfkA Synpcc7942_0592 0.82 -0.7 580,204 - pfkA Synpcc7942_0592 0.82 +0.2 580,204 - pfkA Synpcc7942_0592 0.82 -2.0 580,204 - pfkA Synpcc7942_0592 0.82 -0.1 580,204 - pfkA Synpcc7942_0592 0.82 -0.1 580,204 - pfkA Synpcc7942_0592 0.82 -0.4 580,204 - pfkA Synpcc7942_0592 0.82 -0.2 580,228 - pfkA Synpcc7942_0592 0.85 +0.4 580,228 - pfkA Synpcc7942_0592 0.85 -0.3 580,241 - pfkA Synpcc7942_0592 0.86 +0.1 580,246 + pfkA Synpcc7942_0592 0.86 +0.2 580,256 + pfkA Synpcc7942_0592 0.87 -0.3 580,257 + pfkA Synpcc7942_0592 0.87 +1.6 580,257 + pfkA Synpcc7942_0592 0.87 +0.6 580,257 + pfkA Synpcc7942_0592 0.87 -0.7 580,257 + pfkA Synpcc7942_0592 0.87 +0.3 580,264 - pfkA Synpcc7942_0592 0.88 +1.0 580,266 + pfkA Synpcc7942_0592 0.88 -0.3
Or see this region's nucleotide sequence