Experiment: Light Dark first sampling rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt nha4 and Synpcc7942_0547 are separated by 33 nucleotides Synpcc7942_0547 and Synpcc7942_0548 are separated by 56 nucleotides Synpcc7942_0548 and Synpcc7942_0549 are separated by 100 nucleotides Synpcc7942_0549 and Synpcc7942_0550 are separated by 8 nucleotides
Synpcc7942_0546: nha4 - Na+/H+ antiporter, at 527,876 to 530,023
nha4
Synpcc7942_0547: Synpcc7942_0547 - hypothetical protein, at 530,057 to 530,566
_0547
Synpcc7942_0548: Synpcc7942_0548 - hypothetical protein, at 530,623 to 531,783
_0548
Synpcc7942_0549: Synpcc7942_0549 - hypothetical protein, at 531,884 to 532,645
_0549
Synpcc7942_0550: Synpcc7942_0550 - hypothetical protein, at 532,654 to 533,037
_0550
Position (kb) 530
531
532 Strain fitness (log2 ratio) -2
-1
0
1 at 529.665 kb on + strand, within nha4 at 529.685 kb on - strand, within nha4 at 529.729 kb on - strand, within nha4 at 529.739 kb on - strand, within nha4 at 529.739 kb on - strand, within nha4 at 529.764 kb on + strand, within nha4 at 529.772 kb on - strand, within nha4 at 529.787 kb on - strand, within nha4 at 529.797 kb on + strand, within nha4 at 529.797 kb on + strand, within nha4 at 529.814 kb on + strand at 529.814 kb on + strand at 529.841 kb on + strand at 529.861 kb on + strand at 529.866 kb on + strand at 529.866 kb on + strand at 529.872 kb on - strand at 529.872 kb on - strand at 529.876 kb on + strand at 529.925 kb on + strand at 529.941 kb on - strand at 529.948 kb on + strand at 529.966 kb on - strand at 530.178 kb on + strand, within Synpcc7942_0547 at 530.246 kb on + strand, within Synpcc7942_0547 at 530.255 kb on + strand, within Synpcc7942_0547 at 530.261 kb on + strand, within Synpcc7942_0547 at 530.299 kb on - strand, within Synpcc7942_0547 at 530.332 kb on + strand, within Synpcc7942_0547 at 530.391 kb on + strand, within Synpcc7942_0547 at 530.415 kb on - strand, within Synpcc7942_0547 at 530.550 kb on + strand at 530.558 kb on - strand at 530.588 kb on - strand at 530.588 kb on - strand at 530.588 kb on - strand at 530.605 kb on - strand at 530.613 kb on - strand at 530.621 kb on + strand at 530.629 kb on - strand at 530.629 kb on - strand at 530.802 kb on - strand, within Synpcc7942_0548 at 530.952 kb on + strand, within Synpcc7942_0548 at 531.069 kb on - strand, within Synpcc7942_0548 at 531.138 kb on + strand, within Synpcc7942_0548 at 531.215 kb on + strand, within Synpcc7942_0548 at 531.223 kb on - strand, within Synpcc7942_0548 at 531.223 kb on - strand, within Synpcc7942_0548 at 531.223 kb on - strand, within Synpcc7942_0548 at 531.263 kb on + strand, within Synpcc7942_0548 at 531.284 kb on + strand, within Synpcc7942_0548 at 531.292 kb on - strand, within Synpcc7942_0548 at 531.329 kb on - strand, within Synpcc7942_0548 at 531.367 kb on - strand, within Synpcc7942_0548 at 531.407 kb on + strand, within Synpcc7942_0548 at 531.442 kb on + strand, within Synpcc7942_0548 at 531.454 kb on + strand, within Synpcc7942_0548 at 531.456 kb on + strand, within Synpcc7942_0548 at 531.462 kb on - strand, within Synpcc7942_0548 at 531.464 kb on - strand, within Synpcc7942_0548 at 531.466 kb on + strand, within Synpcc7942_0548 at 531.469 kb on - strand, within Synpcc7942_0548 at 531.475 kb on - strand, within Synpcc7942_0548 at 531.563 kb on + strand, within Synpcc7942_0548 at 531.563 kb on + strand, within Synpcc7942_0548 at 531.595 kb on + strand, within Synpcc7942_0548 at 531.607 kb on + strand, within Synpcc7942_0548 at 531.628 kb on + strand, within Synpcc7942_0548 at 531.683 kb on + strand at 531.683 kb on + strand at 531.822 kb on + strand at 531.828 kb on - strand at 531.839 kb on - strand at 531.851 kb on - strand at 532.611 kb on + strand at 532.611 kb on + strand at 532.655 kb on + strand at 532.737 kb on - strand, within Synpcc7942_0550 at 532.742 kb on + strand, within Synpcc7942_0550 at 532.742 kb on - strand, within Synpcc7942_0550 at 532.772 kb on - strand, within Synpcc7942_0550
Per-strain Table
Position Strand Gene LocusTag Fraction Light Dark first sampling rep1 remove 529,665 + nha4 Synpcc7942_0546 0.83 -1.9 529,685 - nha4 Synpcc7942_0546 0.84 -1.3 529,729 - nha4 Synpcc7942_0546 0.86 +0.2 529,739 - nha4 Synpcc7942_0546 0.87 -0.2 529,739 - nha4 Synpcc7942_0546 0.87 +0.5 529,764 + nha4 Synpcc7942_0546 0.88 -2.4 529,772 - nha4 Synpcc7942_0546 0.88 -1.1 529,787 - nha4 Synpcc7942_0546 0.89 -0.8 529,797 + nha4 Synpcc7942_0546 0.89 -0.6 529,797 + nha4 Synpcc7942_0546 0.89 +0.2 529,814 + -0.6 529,814 + -0.2 529,841 + +0.9 529,861 + -0.8 529,866 + +0.1 529,866 + -1.4 529,872 - -0.6 529,872 - -1.1 529,876 + +0.1 529,925 + -0.1 529,941 - -0.8 529,948 + -0.6 529,966 - -0.6 530,178 + Synpcc7942_0547 0.24 -0.6 530,246 + Synpcc7942_0547 0.37 -0.5 530,255 + Synpcc7942_0547 0.39 +0.3 530,261 + Synpcc7942_0547 0.40 +0.2 530,299 - Synpcc7942_0547 0.47 +0.6 530,332 + Synpcc7942_0547 0.54 +0.8 530,391 + Synpcc7942_0547 0.65 +0.1 530,415 - Synpcc7942_0547 0.70 -0.4 530,550 + -1.8 530,558 - +0.8 530,588 - -0.2 530,588 - +1.6 530,588 - -0.2 530,605 - -0.6 530,613 - -0.7 530,621 + -1.5 530,629 - -1.7 530,629 - +1.2 530,802 - Synpcc7942_0548 0.15 -1.9 530,952 + Synpcc7942_0548 0.28 -2.1 531,069 - Synpcc7942_0548 0.38 -1.7 531,138 + Synpcc7942_0548 0.44 +0.5 531,215 + Synpcc7942_0548 0.51 -0.4 531,223 - Synpcc7942_0548 0.52 -0.4 531,223 - Synpcc7942_0548 0.52 -2.3 531,223 - Synpcc7942_0548 0.52 -1.1 531,263 + Synpcc7942_0548 0.55 +0.2 531,284 + Synpcc7942_0548 0.57 -0.0 531,292 - Synpcc7942_0548 0.58 -0.6 531,329 - Synpcc7942_0548 0.61 -1.4 531,367 - Synpcc7942_0548 0.64 -0.5 531,407 + Synpcc7942_0548 0.68 -1.1 531,442 + Synpcc7942_0548 0.71 -0.2 531,454 + Synpcc7942_0548 0.72 +0.2 531,456 + Synpcc7942_0548 0.72 -0.5 531,462 - Synpcc7942_0548 0.72 +0.3 531,464 - Synpcc7942_0548 0.72 -0.1 531,466 + Synpcc7942_0548 0.73 -0.6 531,469 - Synpcc7942_0548 0.73 -0.5 531,475 - Synpcc7942_0548 0.73 -2.3 531,563 + Synpcc7942_0548 0.81 -0.7 531,563 + Synpcc7942_0548 0.81 -1.6 531,595 + Synpcc7942_0548 0.84 -1.8 531,607 + Synpcc7942_0548 0.85 -0.7 531,628 + Synpcc7942_0548 0.87 -1.2 531,683 + -0.4 531,683 + -2.0 531,822 + +0.4 531,828 - -0.4 531,839 - +1.2 531,851 - +0.1 532,611 + +0.3 532,611 + -0.6 532,655 + +0.4 532,737 - Synpcc7942_0550 0.22 +1.0 532,742 + Synpcc7942_0550 0.23 -0.1 532,742 - Synpcc7942_0550 0.23 -0.9 532,772 - Synpcc7942_0550 0.31 -1.0
Or see this region's nucleotide sequence