Experiment: Light Dark first sampling rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0528 and nagB overlap by 36 nucleotides nagB and Synpcc7942_0530 are separated by 3 nucleotides Synpcc7942_0530 and Synpcc7942_0531 are separated by 24 nucleotides
Synpcc7942_0528: Synpcc7942_0528 - Lipopolysaccharide biosynthesis proteins LPS, at 512,589 to 513,578
_0528
Synpcc7942_0529: nagB - 6-phosphogluconolactonase, at 513,543 to 514,331
nagB
Synpcc7942_0530: Synpcc7942_0530 - 4Fe-4S cluster binding, at 514,335 to 515,288
_0530
Synpcc7942_0531: Synpcc7942_0531 - TPR repeat, at 515,313 to 516,176
_0531
Position (kb) 513
514
515 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 512.563 kb on + strand at 512.569 kb on + strand at 512.578 kb on + strand at 512.599 kb on - strand at 512.601 kb on + strand at 512.607 kb on + strand at 512.607 kb on + strand at 512.607 kb on + strand at 512.609 kb on - strand at 512.609 kb on - strand at 512.610 kb on - strand at 512.610 kb on - strand at 512.610 kb on - strand at 512.626 kb on - strand at 512.629 kb on - strand at 512.658 kb on + strand at 512.725 kb on - strand, within Synpcc7942_0528 at 512.757 kb on + strand, within Synpcc7942_0528 at 512.799 kb on - strand, within Synpcc7942_0528 at 512.812 kb on + strand, within Synpcc7942_0528 at 512.814 kb on + strand, within Synpcc7942_0528 at 512.879 kb on - strand, within Synpcc7942_0528 at 512.921 kb on + strand, within Synpcc7942_0528 at 512.943 kb on + strand, within Synpcc7942_0528 at 512.951 kb on - strand, within Synpcc7942_0528 at 512.957 kb on - strand, within Synpcc7942_0528 at 512.962 kb on + strand, within Synpcc7942_0528 at 512.970 kb on - strand, within Synpcc7942_0528 at 512.973 kb on + strand, within Synpcc7942_0528 at 512.983 kb on + strand, within Synpcc7942_0528 at 513.024 kb on + strand, within Synpcc7942_0528 at 513.029 kb on - strand, within Synpcc7942_0528 at 513.049 kb on + strand, within Synpcc7942_0528 at 513.160 kb on - strand, within Synpcc7942_0528 at 513.162 kb on - strand, within Synpcc7942_0528 at 513.171 kb on - strand, within Synpcc7942_0528 at 513.182 kb on + strand, within Synpcc7942_0528 at 513.203 kb on + strand, within Synpcc7942_0528 at 513.249 kb on + strand, within Synpcc7942_0528 at 513.251 kb on + strand, within Synpcc7942_0528 at 513.257 kb on - strand, within Synpcc7942_0528 at 513.262 kb on - strand, within Synpcc7942_0528 at 513.378 kb on + strand, within Synpcc7942_0528 at 513.386 kb on - strand, within Synpcc7942_0528 at 513.386 kb on - strand, within Synpcc7942_0528 at 513.386 kb on - strand, within Synpcc7942_0528 at 513.386 kb on - strand, within Synpcc7942_0528 at 513.416 kb on + strand, within Synpcc7942_0528 at 513.418 kb on - strand, within Synpcc7942_0528 at 513.447 kb on + strand, within Synpcc7942_0528 at 513.460 kb on - strand, within Synpcc7942_0528 at 513.476 kb on - strand, within Synpcc7942_0528 at 513.488 kb on + strand at 513.496 kb on - strand at 513.499 kb on + strand at 513.512 kb on + strand at 513.516 kb on + strand at 513.516 kb on + strand at 513.519 kb on - strand at 513.520 kb on - strand at 513.524 kb on - strand at 513.524 kb on - strand at 513.533 kb on + strand at 513.547 kb on - strand at 513.559 kb on - strand at 513.561 kb on + strand at 513.564 kb on - strand at 513.564 kb on - strand at 513.575 kb on + strand at 513.581 kb on + strand at 513.583 kb on - strand at 513.593 kb on - strand at 513.593 kb on - strand at 513.596 kb on + strand at 513.596 kb on + strand at 513.605 kb on - strand at 513.630 kb on + strand, within nagB at 513.671 kb on - strand, within nagB at 513.693 kb on - strand, within nagB at 513.723 kb on - strand, within nagB at 513.735 kb on + strand, within nagB at 513.754 kb on - strand, within nagB at 513.765 kb on + strand, within nagB at 513.766 kb on - strand, within nagB at 513.775 kb on + strand, within nagB at 513.799 kb on + strand, within nagB at 513.814 kb on - strand, within nagB at 513.816 kb on + strand, within nagB at 513.856 kb on + strand, within nagB at 513.858 kb on - strand, within nagB at 513.908 kb on + strand, within nagB at 513.916 kb on - strand, within nagB at 513.940 kb on - strand, within nagB at 513.990 kb on + strand, within nagB at 513.990 kb on + strand, within nagB at 514.004 kb on - strand, within nagB at 514.019 kb on - strand, within nagB at 514.027 kb on + strand, within nagB at 514.067 kb on - strand, within nagB at 514.080 kb on + strand, within nagB at 514.088 kb on - strand, within nagB at 514.088 kb on - strand, within nagB at 514.094 kb on + strand, within nagB at 514.247 kb on - strand, within nagB at 514.272 kb on - strand at 514.289 kb on + strand at 514.297 kb on - strand at 514.330 kb on + strand at 514.358 kb on + strand at 514.361 kb on - strand at 514.361 kb on - strand at 514.366 kb on - strand at 514.366 kb on - strand at 514.366 kb on - strand at 514.366 kb on - strand at 514.366 kb on - strand at 514.366 kb on - strand at 514.392 kb on - strand at 514.458 kb on + strand, within Synpcc7942_0530 at 514.458 kb on + strand, within Synpcc7942_0530 at 514.458 kb on + strand, within Synpcc7942_0530 at 514.458 kb on + strand, within Synpcc7942_0530 at 514.458 kb on + strand, within Synpcc7942_0530 at 514.466 kb on - strand, within Synpcc7942_0530 at 514.466 kb on - strand, within Synpcc7942_0530 at 514.466 kb on - strand, within Synpcc7942_0530 at 514.466 kb on - strand, within Synpcc7942_0530 at 514.466 kb on - strand, within Synpcc7942_0530 at 514.527 kb on + strand, within Synpcc7942_0530 at 514.540 kb on + strand, within Synpcc7942_0530 at 514.552 kb on - strand, within Synpcc7942_0530 at 514.559 kb on + strand, within Synpcc7942_0530 at 514.561 kb on + strand, within Synpcc7942_0530 at 514.562 kb on - strand, within Synpcc7942_0530 at 514.567 kb on - strand, within Synpcc7942_0530 at 514.579 kb on + strand, within Synpcc7942_0530 at 514.587 kb on - strand, within Synpcc7942_0530 at 514.618 kb on + strand, within Synpcc7942_0530 at 514.655 kb on - strand, within Synpcc7942_0530 at 514.670 kb on + strand, within Synpcc7942_0530 at 514.679 kb on + strand, within Synpcc7942_0530 at 514.715 kb on + strand, within Synpcc7942_0530 at 514.718 kb on + strand, within Synpcc7942_0530 at 514.736 kb on - strand, within Synpcc7942_0530 at 514.746 kb on - strand, within Synpcc7942_0530 at 514.764 kb on + strand, within Synpcc7942_0530 at 514.764 kb on + strand, within Synpcc7942_0530 at 514.807 kb on + strand, within Synpcc7942_0530 at 514.845 kb on + strand, within Synpcc7942_0530 at 514.853 kb on - strand, within Synpcc7942_0530 at 514.876 kb on - strand, within Synpcc7942_0530 at 514.886 kb on - strand, within Synpcc7942_0530 at 514.903 kb on + strand, within Synpcc7942_0530 at 514.903 kb on + strand, within Synpcc7942_0530 at 514.903 kb on + strand, within Synpcc7942_0530 at 514.911 kb on - strand, within Synpcc7942_0530 at 514.920 kb on + strand, within Synpcc7942_0530 at 514.928 kb on - strand, within Synpcc7942_0530 at 514.937 kb on + strand, within Synpcc7942_0530 at 514.937 kb on + strand, within Synpcc7942_0530 at 514.937 kb on + strand, within Synpcc7942_0530 at 514.945 kb on - strand, within Synpcc7942_0530 at 514.945 kb on - strand, within Synpcc7942_0530 at 514.945 kb on - strand, within Synpcc7942_0530 at 514.966 kb on - strand, within Synpcc7942_0530 at 514.968 kb on + strand, within Synpcc7942_0530 at 514.980 kb on + strand, within Synpcc7942_0530 at 514.998 kb on + strand, within Synpcc7942_0530 at 515.025 kb on + strand, within Synpcc7942_0530 at 515.033 kb on - strand, within Synpcc7942_0530 at 515.056 kb on + strand, within Synpcc7942_0530 at 515.076 kb on + strand, within Synpcc7942_0530 at 515.135 kb on - strand, within Synpcc7942_0530 at 515.145 kb on - strand, within Synpcc7942_0530 at 515.145 kb on - strand, within Synpcc7942_0530 at 515.145 kb on - strand, within Synpcc7942_0530 at 515.150 kb on - strand, within Synpcc7942_0530 at 515.151 kb on + strand, within Synpcc7942_0530 at 515.161 kb on - strand at 515.163 kb on + strand, within Synpcc7942_0530 at 515.174 kb on + strand, within Synpcc7942_0530 at 515.190 kb on + strand, within Synpcc7942_0530 at 515.197 kb on + strand at 515.197 kb on - strand at 515.212 kb on + strand at 515.217 kb on - strand at 515.245 kb on + strand at 515.268 kb on + strand at 515.318 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Light Dark first sampling rep1 remove 512,563 + -1.3 512,569 + -0.0 512,578 + +0.4 512,599 - -0.7 512,601 + +0.1 512,607 + -0.1 512,607 + +0.6 512,607 + -1.8 512,609 - +0.5 512,609 - +1.3 512,610 - -0.4 512,610 - +1.1 512,610 - -0.0 512,626 - -0.1 512,629 - +0.6 512,658 + -0.3 512,725 - Synpcc7942_0528 0.14 -0.7 512,757 + Synpcc7942_0528 0.17 +0.3 512,799 - Synpcc7942_0528 0.21 -1.2 512,812 + Synpcc7942_0528 0.23 -0.3 512,814 + Synpcc7942_0528 0.23 -0.1 512,879 - Synpcc7942_0528 0.29 -0.2 512,921 + Synpcc7942_0528 0.34 +0.9 512,943 + Synpcc7942_0528 0.36 -0.6 512,951 - Synpcc7942_0528 0.37 -0.1 512,957 - Synpcc7942_0528 0.37 +0.6 512,962 + Synpcc7942_0528 0.38 +0.1 512,970 - Synpcc7942_0528 0.38 +0.6 512,973 + Synpcc7942_0528 0.39 -1.5 512,983 + Synpcc7942_0528 0.40 -0.8 513,024 + Synpcc7942_0528 0.44 +0.9 513,029 - Synpcc7942_0528 0.44 -0.9 513,049 + Synpcc7942_0528 0.46 -0.2 513,160 - Synpcc7942_0528 0.58 +0.3 513,162 - Synpcc7942_0528 0.58 -2.3 513,171 - Synpcc7942_0528 0.59 -1.2 513,182 + Synpcc7942_0528 0.60 -0.7 513,203 + Synpcc7942_0528 0.62 -0.7 513,249 + Synpcc7942_0528 0.67 +0.2 513,251 + Synpcc7942_0528 0.67 -1.0 513,257 - Synpcc7942_0528 0.67 -3.5 513,262 - Synpcc7942_0528 0.68 -0.2 513,378 + Synpcc7942_0528 0.80 -0.4 513,386 - Synpcc7942_0528 0.81 -0.8 513,386 - Synpcc7942_0528 0.81 +0.1 513,386 - Synpcc7942_0528 0.81 +0.6 513,386 - Synpcc7942_0528 0.81 -0.2 513,416 + Synpcc7942_0528 0.84 -0.1 513,418 - Synpcc7942_0528 0.84 -0.9 513,447 + Synpcc7942_0528 0.87 +0.7 513,460 - Synpcc7942_0528 0.88 -0.5 513,476 - Synpcc7942_0528 0.90 +0.1 513,488 + -0.3 513,496 - -0.9 513,499 + +0.5 513,512 + +0.2 513,516 + -0.2 513,516 + +0.1 513,519 - -0.6 513,520 - -0.2 513,524 - +0.3 513,524 - +0.4 513,533 + -0.6 513,547 - -0.2 513,559 - -0.2 513,561 + +0.4 513,564 - +0.8 513,564 - +0.4 513,575 + -0.9 513,581 + +0.6 513,583 - -0.5 513,593 - -0.1 513,593 - -0.2 513,596 + +2.0 513,596 + -3.2 513,605 - -0.4 513,630 + nagB Synpcc7942_0529 0.11 -0.3 513,671 - nagB Synpcc7942_0529 0.16 +0.2 513,693 - nagB Synpcc7942_0529 0.19 -2.1 513,723 - nagB Synpcc7942_0529 0.23 -0.6 513,735 + nagB Synpcc7942_0529 0.24 -0.9 513,754 - nagB Synpcc7942_0529 0.27 -0.3 513,765 + nagB Synpcc7942_0529 0.28 -0.4 513,766 - nagB Synpcc7942_0529 0.28 -0.7 513,775 + nagB Synpcc7942_0529 0.29 -0.0 513,799 + nagB Synpcc7942_0529 0.32 +0.3 513,814 - nagB Synpcc7942_0529 0.34 -0.1 513,816 + nagB Synpcc7942_0529 0.35 -0.4 513,856 + nagB Synpcc7942_0529 0.40 -2.4 513,858 - nagB Synpcc7942_0529 0.40 -2.5 513,908 + nagB Synpcc7942_0529 0.46 -1.8 513,916 - nagB Synpcc7942_0529 0.47 -2.0 513,940 - nagB Synpcc7942_0529 0.50 -0.5 513,990 + nagB Synpcc7942_0529 0.57 -1.2 513,990 + nagB Synpcc7942_0529 0.57 +0.2 514,004 - nagB Synpcc7942_0529 0.58 +0.5 514,019 - nagB Synpcc7942_0529 0.60 -0.7 514,027 + nagB Synpcc7942_0529 0.61 -2.3 514,067 - nagB Synpcc7942_0529 0.66 -1.9 514,080 + nagB Synpcc7942_0529 0.68 -0.1 514,088 - nagB Synpcc7942_0529 0.69 -2.2 514,088 - nagB Synpcc7942_0529 0.69 -1.4 514,094 + nagB Synpcc7942_0529 0.70 -1.2 514,247 - nagB Synpcc7942_0529 0.89 -1.5 514,272 - -0.4 514,289 + -1.3 514,297 - -1.2 514,330 + +0.3 514,358 + -1.5 514,361 - +0.5 514,361 - -0.1 514,366 - +0.5 514,366 - -0.4 514,366 - -1.1 514,366 - +0.8 514,366 - +0.6 514,366 - +0.1 514,392 - +0.6 514,458 + Synpcc7942_0530 0.13 +0.2 514,458 + Synpcc7942_0530 0.13 +0.7 514,458 + Synpcc7942_0530 0.13 +0.6 514,458 + Synpcc7942_0530 0.13 +1.6 514,458 + Synpcc7942_0530 0.13 +0.3 514,466 - Synpcc7942_0530 0.14 -0.1 514,466 - Synpcc7942_0530 0.14 +0.7 514,466 - Synpcc7942_0530 0.14 -0.9 514,466 - Synpcc7942_0530 0.14 +0.6 514,466 - Synpcc7942_0530 0.14 -0.2 514,527 + Synpcc7942_0530 0.20 -0.2 514,540 + Synpcc7942_0530 0.21 -0.5 514,552 - Synpcc7942_0530 0.23 -0.6 514,559 + Synpcc7942_0530 0.23 +1.9 514,561 + Synpcc7942_0530 0.24 -0.5 514,562 - Synpcc7942_0530 0.24 -1.0 514,567 - Synpcc7942_0530 0.24 +0.6 514,579 + Synpcc7942_0530 0.26 -0.4 514,587 - Synpcc7942_0530 0.26 -1.2 514,618 + Synpcc7942_0530 0.30 +0.3 514,655 - Synpcc7942_0530 0.34 +0.1 514,670 + Synpcc7942_0530 0.35 -0.9 514,679 + Synpcc7942_0530 0.36 +0.2 514,715 + Synpcc7942_0530 0.40 -0.9 514,718 + Synpcc7942_0530 0.40 +0.5 514,736 - Synpcc7942_0530 0.42 -0.0 514,746 - Synpcc7942_0530 0.43 +0.8 514,764 + Synpcc7942_0530 0.45 -0.7 514,764 + Synpcc7942_0530 0.45 +1.2 514,807 + Synpcc7942_0530 0.49 +0.1 514,845 + Synpcc7942_0530 0.53 +0.1 514,853 - Synpcc7942_0530 0.54 -0.2 514,876 - Synpcc7942_0530 0.57 +0.5 514,886 - Synpcc7942_0530 0.58 -1.2 514,903 + Synpcc7942_0530 0.60 -0.6 514,903 + Synpcc7942_0530 0.60 -1.0 514,903 + Synpcc7942_0530 0.60 +0.5 514,911 - Synpcc7942_0530 0.60 +0.3 514,920 + Synpcc7942_0530 0.61 -0.5 514,928 - Synpcc7942_0530 0.62 -0.1 514,937 + Synpcc7942_0530 0.63 -0.4 514,937 + Synpcc7942_0530 0.63 -0.3 514,937 + Synpcc7942_0530 0.63 -0.2 514,945 - Synpcc7942_0530 0.64 -0.1 514,945 - Synpcc7942_0530 0.64 +0.4 514,945 - Synpcc7942_0530 0.64 -1.2 514,966 - Synpcc7942_0530 0.66 +0.2 514,968 + Synpcc7942_0530 0.66 -0.6 514,980 + Synpcc7942_0530 0.68 +0.2 514,998 + Synpcc7942_0530 0.69 -1.2 515,025 + Synpcc7942_0530 0.72 -0.4 515,033 - Synpcc7942_0530 0.73 +0.4 515,056 + Synpcc7942_0530 0.76 +0.8 515,076 + Synpcc7942_0530 0.78 -0.2 515,135 - Synpcc7942_0530 0.84 -0.4 515,145 - Synpcc7942_0530 0.85 +0.4 515,145 - Synpcc7942_0530 0.85 +1.0 515,145 - Synpcc7942_0530 0.85 -0.1 515,150 - Synpcc7942_0530 0.85 +0.3 515,151 + Synpcc7942_0530 0.86 -0.4 515,161 - -0.2 515,163 + Synpcc7942_0530 0.87 +0.0 515,174 + Synpcc7942_0530 0.88 -1.1 515,190 + Synpcc7942_0530 0.90 +0.8 515,197 + -0.1 515,197 - +0.2 515,212 + -0.1 515,217 - -0.5 515,245 + -0.1 515,268 + +2.1 515,318 - -0.9
Or see this region's nucleotide sequence