Experiment: Light Dark first sampling rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt nagA and purE are separated by 49 nucleotides purE and amt1 are separated by 266 nucleotides amt1 and Synpcc7942_0443 are separated by 124 nucleotides
Synpcc7942_0440: nagA - N-acetylglucosamine 6-phosphate deacetylase, at 429,346 to 430,473
nagA
Synpcc7942_0441: purE - phosphoribosylaminoimidazole carboxylase, catalytic subunit, at 430,523 to 431,191
purE
Synpcc7942_0442: amt1 - ammonium transporter, at 431,458 to 432,951
amt1
Synpcc7942_0443: Synpcc7942_0443 - hypothetical protein, at 433,076 to 434,317
_0443
Position (kb) 431
432
433 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 430.551 kb on - strand at 430.570 kb on + strand at 430.570 kb on + strand at 430.587 kb on + strand at 430.611 kb on + strand, within purE at 430.618 kb on - strand, within purE at 430.627 kb on - strand, within purE at 431.217 kb on + strand at 431.225 kb on + strand at 431.233 kb on - strand at 431.306 kb on + strand at 431.336 kb on - strand at 431.404 kb on + strand at 431.412 kb on + strand at 431.420 kb on - strand at 431.439 kb on + strand at 431.522 kb on + strand at 431.525 kb on - strand at 431.554 kb on - strand at 431.586 kb on + strand at 431.625 kb on + strand, within amt1 at 431.633 kb on - strand, within amt1 at 431.633 kb on - strand, within amt1 at 431.633 kb on - strand, within amt1 at 431.635 kb on + strand, within amt1 at 431.654 kb on + strand, within amt1 at 431.697 kb on + strand, within amt1 at 431.705 kb on - strand, within amt1 at 431.754 kb on + strand, within amt1 at 431.759 kb on + strand, within amt1 at 431.762 kb on - strand, within amt1 at 431.941 kb on - strand, within amt1 at 432.009 kb on + strand, within amt1 at 432.009 kb on + strand, within amt1 at 432.047 kb on - strand, within amt1 at 432.100 kb on + strand, within amt1 at 432.140 kb on + strand, within amt1 at 432.203 kb on - strand, within amt1 at 432.217 kb on + strand, within amt1 at 432.222 kb on + strand, within amt1 at 432.225 kb on - strand, within amt1 at 432.225 kb on - strand, within amt1 at 432.230 kb on + strand, within amt1 at 432.242 kb on + strand, within amt1 at 432.266 kb on - strand, within amt1 at 432.297 kb on - strand, within amt1 at 432.297 kb on - strand, within amt1 at 432.297 kb on - strand, within amt1 at 432.359 kb on + strand, within amt1 at 432.378 kb on - strand, within amt1 at 432.404 kb on + strand, within amt1 at 432.404 kb on + strand, within amt1 at 432.412 kb on - strand, within amt1 at 432.412 kb on - strand, within amt1 at 432.412 kb on - strand, within amt1 at 432.414 kb on + strand, within amt1 at 432.435 kb on - strand, within amt1 at 432.457 kb on - strand, within amt1 at 432.469 kb on + strand, within amt1 at 432.477 kb on + strand, within amt1 at 432.516 kb on - strand, within amt1 at 432.538 kb on + strand, within amt1 at 432.609 kb on - strand, within amt1 at 432.696 kb on + strand, within amt1 at 432.717 kb on + strand, within amt1 at 432.717 kb on + strand, within amt1 at 432.717 kb on + strand, within amt1 at 432.725 kb on - strand, within amt1 at 432.725 kb on - strand, within amt1 at 432.727 kb on + strand, within amt1 at 432.738 kb on - strand, within amt1 at 432.777 kb on + strand, within amt1 at 432.795 kb on - strand, within amt1 at 432.824 kb on - strand at 432.864 kb on - strand at 432.865 kb on + strand at 432.873 kb on - strand at 432.907 kb on - strand at 432.928 kb on + strand at 432.952 kb on + strand at 433.054 kb on - strand at 433.057 kb on + strand at 433.103 kb on + strand at 433.181 kb on + strand at 433.181 kb on + strand at 433.186 kb on + strand at 433.189 kb on - strand at 433.189 kb on - strand at 433.189 kb on - strand at 433.189 kb on - strand at 433.194 kb on - strand at 433.204 kb on - strand, within Synpcc7942_0443 at 433.238 kb on - strand, within Synpcc7942_0443 at 433.239 kb on + strand, within Synpcc7942_0443 at 433.245 kb on - strand, within Synpcc7942_0443 at 433.265 kb on + strand at 433.270 kb on - strand, within Synpcc7942_0443 at 433.273 kb on - strand, within Synpcc7942_0443 at 433.281 kb on + strand, within Synpcc7942_0443 at 433.288 kb on - strand, within Synpcc7942_0443 at 433.288 kb on - strand, within Synpcc7942_0443 at 433.305 kb on - strand, within Synpcc7942_0443 at 433.307 kb on + strand, within Synpcc7942_0443 at 433.309 kb on + strand, within Synpcc7942_0443 at 433.315 kb on - strand, within Synpcc7942_0443 at 433.325 kb on - strand, within Synpcc7942_0443 at 433.346 kb on + strand, within Synpcc7942_0443 at 433.373 kb on + strand, within Synpcc7942_0443 at 433.376 kb on - strand, within Synpcc7942_0443 at 433.506 kb on + strand, within Synpcc7942_0443 at 433.512 kb on - strand, within Synpcc7942_0443 at 433.516 kb on + strand, within Synpcc7942_0443 at 433.594 kb on + strand, within Synpcc7942_0443 at 433.594 kb on + strand, within Synpcc7942_0443 at 433.602 kb on - strand, within Synpcc7942_0443 at 433.602 kb on - strand, within Synpcc7942_0443 at 433.603 kb on - strand, within Synpcc7942_0443 at 433.674 kb on + strand, within Synpcc7942_0443 at 433.680 kb on + strand, within Synpcc7942_0443 at 433.750 kb on + strand, within Synpcc7942_0443 at 433.763 kb on - strand, within Synpcc7942_0443 at 433.778 kb on - strand, within Synpcc7942_0443 at 433.788 kb on - strand at 433.811 kb on + strand, within Synpcc7942_0443 at 433.811 kb on + strand, within Synpcc7942_0443 at 433.876 kb on + strand, within Synpcc7942_0443 at 433.882 kb on + strand, within Synpcc7942_0443 at 433.890 kb on - strand, within Synpcc7942_0443 at 433.890 kb on - strand, within Synpcc7942_0443 at 433.918 kb on - strand, within Synpcc7942_0443 at 433.920 kb on - strand, within Synpcc7942_0443
Per-strain Table
Position Strand Gene LocusTag Fraction Light Dark first sampling rep1 remove 430,551 - -2.5 430,570 + -0.5 430,570 + -0.7 430,587 + -1.5 430,611 + purE Synpcc7942_0441 0.13 +0.2 430,618 - purE Synpcc7942_0441 0.14 -0.4 430,627 - purE Synpcc7942_0441 0.16 -0.0 431,217 + +0.5 431,225 + -0.2 431,233 - +0.0 431,306 + -0.9 431,336 - +0.5 431,404 + -0.7 431,412 + -0.5 431,420 - -0.2 431,439 + -1.6 431,522 + -1.1 431,525 - +0.5 431,554 - -0.8 431,586 + +1.3 431,625 + amt1 Synpcc7942_0442 0.11 -1.0 431,633 - amt1 Synpcc7942_0442 0.12 -2.0 431,633 - amt1 Synpcc7942_0442 0.12 -1.4 431,633 - amt1 Synpcc7942_0442 0.12 -1.7 431,635 + amt1 Synpcc7942_0442 0.12 -1.0 431,654 + amt1 Synpcc7942_0442 0.13 +0.3 431,697 + amt1 Synpcc7942_0442 0.16 -0.8 431,705 - amt1 Synpcc7942_0442 0.17 +0.5 431,754 + amt1 Synpcc7942_0442 0.20 -0.7 431,759 + amt1 Synpcc7942_0442 0.20 -1.5 431,762 - amt1 Synpcc7942_0442 0.20 -1.8 431,941 - amt1 Synpcc7942_0442 0.32 -0.8 432,009 + amt1 Synpcc7942_0442 0.37 -1.3 432,009 + amt1 Synpcc7942_0442 0.37 -1.2 432,047 - amt1 Synpcc7942_0442 0.39 -0.4 432,100 + amt1 Synpcc7942_0442 0.43 -0.8 432,140 + amt1 Synpcc7942_0442 0.46 -2.1 432,203 - amt1 Synpcc7942_0442 0.50 -1.6 432,217 + amt1 Synpcc7942_0442 0.51 -1.7 432,222 + amt1 Synpcc7942_0442 0.51 -1.2 432,225 - amt1 Synpcc7942_0442 0.51 -1.0 432,225 - amt1 Synpcc7942_0442 0.51 -0.2 432,230 + amt1 Synpcc7942_0442 0.52 -1.2 432,242 + amt1 Synpcc7942_0442 0.52 -0.5 432,266 - amt1 Synpcc7942_0442 0.54 -0.7 432,297 - amt1 Synpcc7942_0442 0.56 -1.3 432,297 - amt1 Synpcc7942_0442 0.56 -0.2 432,297 - amt1 Synpcc7942_0442 0.56 -2.1 432,359 + amt1 Synpcc7942_0442 0.60 -3.4 432,378 - amt1 Synpcc7942_0442 0.62 -3.1 432,404 + amt1 Synpcc7942_0442 0.63 -1.8 432,404 + amt1 Synpcc7942_0442 0.63 -2.2 432,412 - amt1 Synpcc7942_0442 0.64 -1.2 432,412 - amt1 Synpcc7942_0442 0.64 -1.5 432,412 - amt1 Synpcc7942_0442 0.64 -0.7 432,414 + amt1 Synpcc7942_0442 0.64 -0.8 432,435 - amt1 Synpcc7942_0442 0.65 -0.6 432,457 - amt1 Synpcc7942_0442 0.67 -1.0 432,469 + amt1 Synpcc7942_0442 0.68 -2.3 432,477 + amt1 Synpcc7942_0442 0.68 -0.1 432,516 - amt1 Synpcc7942_0442 0.71 -1.5 432,538 + amt1 Synpcc7942_0442 0.72 +0.0 432,609 - amt1 Synpcc7942_0442 0.77 -0.6 432,696 + amt1 Synpcc7942_0442 0.83 +0.3 432,717 + amt1 Synpcc7942_0442 0.84 -1.2 432,717 + amt1 Synpcc7942_0442 0.84 -1.7 432,717 + amt1 Synpcc7942_0442 0.84 -0.2 432,725 - amt1 Synpcc7942_0442 0.85 -0.8 432,725 - amt1 Synpcc7942_0442 0.85 -0.2 432,727 + amt1 Synpcc7942_0442 0.85 -1.5 432,738 - amt1 Synpcc7942_0442 0.86 -0.4 432,777 + amt1 Synpcc7942_0442 0.88 -1.3 432,795 - amt1 Synpcc7942_0442 0.89 -0.8 432,824 - -2.7 432,864 - -2.0 432,865 + -1.8 432,873 - -3.5 432,907 - -1.9 432,928 + -1.5 432,952 + -0.2 433,054 - +0.5 433,057 + +1.0 433,103 + -0.2 433,181 + -0.4 433,181 + +0.1 433,186 + +0.1 433,189 - -0.5 433,189 - -0.2 433,189 - +0.6 433,189 - +0.4 433,194 - -0.8 433,204 - Synpcc7942_0443 0.10 +1.3 433,238 - Synpcc7942_0443 0.13 +0.2 433,239 + Synpcc7942_0443 0.13 +0.0 433,245 - Synpcc7942_0443 0.14 +0.6 433,265 + -1.0 433,270 - Synpcc7942_0443 0.16 -0.7 433,273 - Synpcc7942_0443 0.16 +0.6 433,281 + Synpcc7942_0443 0.17 -1.7 433,288 - Synpcc7942_0443 0.17 +1.0 433,288 - Synpcc7942_0443 0.17 -1.4 433,305 - Synpcc7942_0443 0.18 +0.9 433,307 + Synpcc7942_0443 0.19 +0.4 433,309 + Synpcc7942_0443 0.19 +0.2 433,315 - Synpcc7942_0443 0.19 +0.8 433,325 - Synpcc7942_0443 0.20 +0.3 433,346 + Synpcc7942_0443 0.22 -0.5 433,373 + Synpcc7942_0443 0.24 -0.2 433,376 - Synpcc7942_0443 0.24 +0.3 433,506 + Synpcc7942_0443 0.35 -0.7 433,512 - Synpcc7942_0443 0.35 -0.0 433,516 + Synpcc7942_0443 0.35 -0.0 433,594 + Synpcc7942_0443 0.42 +0.3 433,594 + Synpcc7942_0443 0.42 -1.5 433,602 - Synpcc7942_0443 0.42 -1.0 433,602 - Synpcc7942_0443 0.42 +0.0 433,603 - Synpcc7942_0443 0.42 -1.0 433,674 + Synpcc7942_0443 0.48 +1.1 433,680 + Synpcc7942_0443 0.49 -1.8 433,750 + Synpcc7942_0443 0.54 -0.4 433,763 - Synpcc7942_0443 0.55 +0.3 433,778 - Synpcc7942_0443 0.57 -0.2 433,788 - +0.8 433,811 + Synpcc7942_0443 0.59 -0.0 433,811 + Synpcc7942_0443 0.59 -0.3 433,876 + Synpcc7942_0443 0.64 -1.4 433,882 + Synpcc7942_0443 0.65 -0.4 433,890 - Synpcc7942_0443 0.66 +0.1 433,890 - Synpcc7942_0443 0.66 -0.7 433,918 - Synpcc7942_0443 0.68 +0.9 433,920 - Synpcc7942_0443 0.68 -0.2
Or see this region's nucleotide sequence