Experiment: Light Dark first sampling rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt scpB and Synpcc7942_0427 are separated by 16 nucleotides Synpcc7942_0427 and leuA are separated by 30 nucleotides leuA and Synpcc7942_0429 are separated by 70 nucleotides Synpcc7942_0429 and dxs are separated by 161 nucleotides
Synpcc7942_0426: scpB - condensin subunit ScpB, at 415,535 to 416,086
scpB
Synpcc7942_0427: Synpcc7942_0427 - ATPase, at 416,103 to 416,951
_0427
Synpcc7942_0428: leuA - putative alpha-isopropylmalate/homocitrate synthase family transferase, at 416,982 to 418,610
leuA
Synpcc7942_0429: Synpcc7942_0429 - hypothetical protein, at 418,681 to 419,220
_0429
Synpcc7942_0430: dxs - 1-deoxy-D-xylulose-5-phosphate synthase, at 419,382 to 421,292
dxs
Position (kb) 416
417
418
419 Strain fitness (log2 ratio) -2
-1
0
1 at 415.995 kb on + strand, within scpB at 416.003 kb on - strand, within scpB at 416.023 kb on + strand, within scpB at 416.023 kb on + strand, within scpB at 416.023 kb on + strand, within scpB at 416.023 kb on + strand, within scpB at 416.023 kb on + strand, within scpB at 416.023 kb on + strand, within scpB at 416.031 kb on - strand at 416.031 kb on - strand at 416.031 kb on - strand at 416.031 kb on - strand at 416.031 kb on - strand at 416.031 kb on - strand at 416.031 kb on - strand at 416.031 kb on - strand at 416.045 kb on - strand at 416.045 kb on - strand at 416.051 kb on - strand at 416.082 kb on - strand at 416.102 kb on - strand at 416.142 kb on - strand at 416.171 kb on - strand at 416.171 kb on - strand at 416.176 kb on - strand at 416.176 kb on - strand at 416.199 kb on + strand, within Synpcc7942_0427 at 416.201 kb on + strand, within Synpcc7942_0427 at 416.235 kb on + strand, within Synpcc7942_0427 at 416.237 kb on - strand, within Synpcc7942_0427 at 416.261 kb on + strand, within Synpcc7942_0427 at 416.262 kb on + strand, within Synpcc7942_0427 at 416.270 kb on - strand, within Synpcc7942_0427 at 416.326 kb on - strand, within Synpcc7942_0427 at 416.374 kb on - strand, within Synpcc7942_0427 at 416.376 kb on - strand, within Synpcc7942_0427 at 416.385 kb on + strand, within Synpcc7942_0427 at 416.483 kb on + strand, within Synpcc7942_0427 at 416.517 kb on + strand, within Synpcc7942_0427 at 416.590 kb on - strand, within Synpcc7942_0427 at 416.657 kb on + strand, within Synpcc7942_0427 at 416.708 kb on + strand, within Synpcc7942_0427 at 416.753 kb on + strand, within Synpcc7942_0427 at 416.760 kb on + strand, within Synpcc7942_0427 at 416.788 kb on + strand, within Synpcc7942_0427 at 416.793 kb on + strand, within Synpcc7942_0427 at 416.793 kb on + strand, within Synpcc7942_0427 at 416.798 kb on + strand, within Synpcc7942_0427 at 416.798 kb on + strand, within Synpcc7942_0427 at 416.798 kb on + strand, within Synpcc7942_0427 at 416.801 kb on - strand, within Synpcc7942_0427 at 416.806 kb on - strand, within Synpcc7942_0427 at 416.810 kb on + strand, within Synpcc7942_0427 at 416.859 kb on - strand, within Synpcc7942_0427 at 416.876 kb on + strand at 416.884 kb on - strand at 416.947 kb on + strand at 416.965 kb on - strand at 417.189 kb on - strand, within leuA at 417.218 kb on + strand, within leuA at 417.489 kb on + strand, within leuA at 417.533 kb on + strand, within leuA at 417.997 kb on - strand, within leuA at 418.095 kb on - strand, within leuA at 418.166 kb on - strand, within leuA at 418.439 kb on + strand, within leuA at 418.623 kb on + strand at 418.636 kb on + strand at 418.647 kb on + strand at 418.678 kb on + strand at 418.686 kb on - strand at 418.745 kb on - strand, within Synpcc7942_0429 at 418.747 kb on - strand, within Synpcc7942_0429 at 418.747 kb on - strand, within Synpcc7942_0429 at 418.764 kb on - strand, within Synpcc7942_0429 at 418.810 kb on + strand, within Synpcc7942_0429 at 418.818 kb on - strand, within Synpcc7942_0429 at 418.833 kb on + strand, within Synpcc7942_0429 at 418.863 kb on + strand, within Synpcc7942_0429 at 418.863 kb on + strand, within Synpcc7942_0429 at 418.870 kb on + strand, within Synpcc7942_0429 at 418.870 kb on - strand, within Synpcc7942_0429 at 418.901 kb on + strand, within Synpcc7942_0429 at 418.911 kb on + strand, within Synpcc7942_0429 at 418.948 kb on + strand, within Synpcc7942_0429 at 418.949 kb on + strand, within Synpcc7942_0429 at 419.001 kb on + strand, within Synpcc7942_0429 at 419.022 kb on - strand, within Synpcc7942_0429 at 419.027 kb on - strand, within Synpcc7942_0429 at 419.078 kb on + strand, within Synpcc7942_0429 at 419.092 kb on - strand, within Synpcc7942_0429 at 419.092 kb on - strand, within Synpcc7942_0429 at 419.094 kb on + strand, within Synpcc7942_0429 at 419.094 kb on + strand, within Synpcc7942_0429 at 419.094 kb on + strand, within Synpcc7942_0429 at 419.094 kb on + strand, within Synpcc7942_0429 at 419.102 kb on - strand, within Synpcc7942_0429 at 419.102 kb on - strand, within Synpcc7942_0429 at 419.102 kb on - strand, within Synpcc7942_0429 at 419.142 kb on + strand, within Synpcc7942_0429 at 419.156 kb on + strand, within Synpcc7942_0429 at 419.158 kb on - strand, within Synpcc7942_0429 at 419.160 kb on + strand, within Synpcc7942_0429 at 419.160 kb on - strand, within Synpcc7942_0429 at 419.209 kb on - strand at 419.235 kb on + strand at 419.280 kb on + strand at 419.300 kb on + strand at 419.300 kb on + strand at 419.328 kb on + strand at 419.330 kb on + strand at 419.332 kb on - strand at 419.384 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Light Dark first sampling rep1 remove 415,995 + scpB Synpcc7942_0426 0.83 +0.5 416,003 - scpB Synpcc7942_0426 0.85 -1.5 416,023 + scpB Synpcc7942_0426 0.88 -0.7 416,023 + scpB Synpcc7942_0426 0.88 +1.6 416,023 + scpB Synpcc7942_0426 0.88 +0.2 416,023 + scpB Synpcc7942_0426 0.88 -0.8 416,023 + scpB Synpcc7942_0426 0.88 +0.4 416,023 + scpB Synpcc7942_0426 0.88 +0.6 416,031 - -0.2 416,031 - -0.1 416,031 - +0.1 416,031 - +0.9 416,031 - +0.3 416,031 - +1.1 416,031 - -1.9 416,031 - +0.6 416,045 - +0.1 416,045 - -0.5 416,051 - -1.2 416,082 - -1.1 416,102 - +0.1 416,142 - -0.2 416,171 - -0.5 416,171 - +0.7 416,176 - +1.6 416,176 - -0.4 416,199 + Synpcc7942_0427 0.11 -0.5 416,201 + Synpcc7942_0427 0.12 +0.5 416,235 + Synpcc7942_0427 0.16 +0.5 416,237 - Synpcc7942_0427 0.16 -0.4 416,261 + Synpcc7942_0427 0.19 -0.2 416,262 + Synpcc7942_0427 0.19 -0.4 416,270 - Synpcc7942_0427 0.20 +0.2 416,326 - Synpcc7942_0427 0.26 +0.8 416,374 - Synpcc7942_0427 0.32 +0.8 416,376 - Synpcc7942_0427 0.32 +0.5 416,385 + Synpcc7942_0427 0.33 +0.5 416,483 + Synpcc7942_0427 0.45 +0.3 416,517 + Synpcc7942_0427 0.49 +0.1 416,590 - Synpcc7942_0427 0.57 -0.9 416,657 + Synpcc7942_0427 0.65 +0.1 416,708 + Synpcc7942_0427 0.71 +1.2 416,753 + Synpcc7942_0427 0.77 -0.0 416,760 + Synpcc7942_0427 0.77 +1.1 416,788 + Synpcc7942_0427 0.81 +0.9 416,793 + Synpcc7942_0427 0.81 +0.7 416,793 + Synpcc7942_0427 0.81 -0.9 416,798 + Synpcc7942_0427 0.82 -1.3 416,798 + Synpcc7942_0427 0.82 +0.9 416,798 + Synpcc7942_0427 0.82 -1.7 416,801 - Synpcc7942_0427 0.82 +0.6 416,806 - Synpcc7942_0427 0.83 -0.1 416,810 + Synpcc7942_0427 0.83 +0.3 416,859 - Synpcc7942_0427 0.89 +0.2 416,876 + -0.5 416,884 - -0.2 416,947 + -0.7 416,965 - -0.9 417,189 - leuA Synpcc7942_0428 0.13 -2.1 417,218 + leuA Synpcc7942_0428 0.14 -1.7 417,489 + leuA Synpcc7942_0428 0.31 +1.1 417,533 + leuA Synpcc7942_0428 0.34 -1.5 417,997 - leuA Synpcc7942_0428 0.62 -0.5 418,095 - leuA Synpcc7942_0428 0.68 -0.4 418,166 - leuA Synpcc7942_0428 0.73 -1.4 418,439 + leuA Synpcc7942_0428 0.89 +0.3 418,623 + -0.5 418,636 + -0.8 418,647 + -0.7 418,678 + -0.6 418,686 - -0.9 418,745 - Synpcc7942_0429 0.12 +0.3 418,747 - Synpcc7942_0429 0.12 -0.8 418,747 - Synpcc7942_0429 0.12 +0.6 418,764 - Synpcc7942_0429 0.15 -0.4 418,810 + Synpcc7942_0429 0.24 +0.8 418,818 - Synpcc7942_0429 0.25 -0.6 418,833 + Synpcc7942_0429 0.28 -0.6 418,863 + Synpcc7942_0429 0.34 -0.8 418,863 + Synpcc7942_0429 0.34 +0.1 418,870 + Synpcc7942_0429 0.35 +1.0 418,870 - Synpcc7942_0429 0.35 +0.4 418,901 + Synpcc7942_0429 0.41 +0.2 418,911 + Synpcc7942_0429 0.43 +1.2 418,948 + Synpcc7942_0429 0.49 +0.1 418,949 + Synpcc7942_0429 0.50 -0.1 419,001 + Synpcc7942_0429 0.59 +0.5 419,022 - Synpcc7942_0429 0.63 -0.2 419,027 - Synpcc7942_0429 0.64 +1.0 419,078 + Synpcc7942_0429 0.74 +0.5 419,092 - Synpcc7942_0429 0.76 +0.8 419,092 - Synpcc7942_0429 0.76 -0.5 419,094 + Synpcc7942_0429 0.76 +0.6 419,094 + Synpcc7942_0429 0.76 +1.2 419,094 + Synpcc7942_0429 0.76 +0.2 419,094 + Synpcc7942_0429 0.76 +1.0 419,102 - Synpcc7942_0429 0.78 -0.6 419,102 - Synpcc7942_0429 0.78 +0.6 419,102 - Synpcc7942_0429 0.78 +0.3 419,142 + Synpcc7942_0429 0.85 +0.9 419,156 + Synpcc7942_0429 0.88 -0.5 419,158 - Synpcc7942_0429 0.88 -0.0 419,160 + Synpcc7942_0429 0.89 +0.6 419,160 - Synpcc7942_0429 0.89 -0.3 419,209 - -0.6 419,235 + -0.2 419,280 + -0.1 419,300 + -0.4 419,300 + -1.1 419,328 + +0.5 419,330 + -1.9 419,332 - +0.2 419,384 - -1.5
Or see this region's nucleotide sequence