Experiment: Light Dark first sampling rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0422 and Synpcc7942_0423 are separated by 106 nucleotides Synpcc7942_0423 and psbAI are separated by 258 nucleotides psbAI and Synpcc7942_0425 are separated by 108 nucleotides Synpcc7942_0425 and scpB are separated by 93 nucleotides
Synpcc7942_0422: Synpcc7942_0422 - hypothetical protein, at 412,147 to 413,289
_0422
Synpcc7942_0423: Synpcc7942_0423 - hypothetical protein, at 413,396 to 413,614
_0423
Synpcc7942_0424: psbAI - photosystem q(b) protein, at 413,873 to 414,955
psbAI
Synpcc7942_0425: Synpcc7942_0425 - hypothetical protein, at 415,064 to 415,441
_0425
Synpcc7942_0426: scpB - condensin subunit ScpB, at 415,535 to 416,086
scpB
Position (kb) 413
414
415 Strain fitness (log2 ratio) -2
-1
0
1
2 at 412.893 kb on - strand, within Synpcc7942_0422 at 412.918 kb on - strand, within Synpcc7942_0422 at 412.945 kb on + strand, within Synpcc7942_0422 at 412.955 kb on + strand, within Synpcc7942_0422 at 412.963 kb on - strand, within Synpcc7942_0422 at 412.995 kb on + strand, within Synpcc7942_0422 at 413.027 kb on + strand, within Synpcc7942_0422 at 413.049 kb on - strand, within Synpcc7942_0422 at 413.049 kb on - strand, within Synpcc7942_0422 at 413.095 kb on + strand, within Synpcc7942_0422 at 413.095 kb on + strand, within Synpcc7942_0422 at 413.095 kb on + strand, within Synpcc7942_0422 at 413.095 kb on + strand, within Synpcc7942_0422 at 413.102 kb on - strand, within Synpcc7942_0422 at 413.103 kb on - strand, within Synpcc7942_0422 at 413.107 kb on - strand, within Synpcc7942_0422 at 413.109 kb on + strand, within Synpcc7942_0422 at 413.117 kb on - strand at 413.128 kb on + strand, within Synpcc7942_0422 at 413.136 kb on - strand, within Synpcc7942_0422 at 413.219 kb on + strand at 413.275 kb on - strand at 413.275 kb on - strand at 413.332 kb on - strand at 413.336 kb on + strand at 413.338 kb on + strand at 413.341 kb on - strand at 413.360 kb on - strand at 413.360 kb on - strand at 413.362 kb on + strand at 413.363 kb on - strand at 413.370 kb on - strand at 413.373 kb on + strand at 413.373 kb on + strand at 413.397 kb on + strand at 413.400 kb on - strand at 413.400 kb on - strand at 413.400 kb on - strand at 413.423 kb on + strand, within Synpcc7942_0423 at 413.460 kb on + strand, within Synpcc7942_0423 at 413.479 kb on + strand, within Synpcc7942_0423 at 413.487 kb on - strand, within Synpcc7942_0423 at 413.506 kb on + strand, within Synpcc7942_0423 at 413.571 kb on + strand, within Synpcc7942_0423 at 413.611 kb on + strand at 413.624 kb on + strand at 413.624 kb on + strand at 413.632 kb on - strand at 413.659 kb on - strand at 413.682 kb on + strand at 413.684 kb on + strand at 413.690 kb on - strand at 413.692 kb on + strand at 413.692 kb on + strand at 413.700 kb on - strand at 413.700 kb on - strand at 413.995 kb on + strand at 414.065 kb on - strand, within psbAI at 414.068 kb on + strand, within psbAI at 414.089 kb on - strand, within psbAI at 414.089 kb on - strand, within psbAI at 414.190 kb on + strand, within psbAI at 414.283 kb on + strand, within psbAI at 414.298 kb on + strand, within psbAI at 414.325 kb on - strand, within psbAI at 414.699 kb on + strand, within psbAI at 414.710 kb on + strand, within psbAI at 414.760 kb on - strand, within psbAI at 414.838 kb on - strand, within psbAI at 415.061 kb on + strand at 415.061 kb on + strand at 415.069 kb on - strand at 415.216 kb on - strand, within Synpcc7942_0425 at 415.391 kb on + strand, within Synpcc7942_0425 at 415.393 kb on + strand, within Synpcc7942_0425 at 415.393 kb on + strand, within Synpcc7942_0425 at 415.401 kb on - strand, within Synpcc7942_0425 at 415.436 kb on - strand at 415.554 kb on + strand at 415.605 kb on + strand, within scpB at 415.607 kb on + strand, within scpB at 415.630 kb on - strand, within scpB at 415.648 kb on + strand, within scpB at 415.738 kb on - strand, within scpB at 415.738 kb on - strand, within scpB at 415.750 kb on + strand, within scpB at 415.758 kb on - strand, within scpB at 415.758 kb on - strand, within scpB at 415.758 kb on - strand, within scpB at 415.768 kb on - strand, within scpB at 415.817 kb on + strand, within scpB at 415.845 kb on + strand, within scpB at 415.879 kb on - strand, within scpB at 415.879 kb on - strand, within scpB at 415.912 kb on - strand, within scpB at 415.922 kb on + strand, within scpB
Per-strain Table
Position Strand Gene LocusTag Fraction Light Dark first sampling rep1 remove 412,893 - Synpcc7942_0422 0.65 -0.3 412,918 - Synpcc7942_0422 0.67 -0.0 412,945 + Synpcc7942_0422 0.70 +0.8 412,955 + Synpcc7942_0422 0.71 +1.6 412,963 - Synpcc7942_0422 0.71 +0.2 412,995 + Synpcc7942_0422 0.74 -0.4 413,027 + Synpcc7942_0422 0.77 +0.5 413,049 - Synpcc7942_0422 0.79 -1.4 413,049 - Synpcc7942_0422 0.79 -0.2 413,095 + Synpcc7942_0422 0.83 +0.5 413,095 + Synpcc7942_0422 0.83 +0.1 413,095 + Synpcc7942_0422 0.83 +0.2 413,095 + Synpcc7942_0422 0.83 +0.1 413,102 - Synpcc7942_0422 0.84 -1.2 413,103 - Synpcc7942_0422 0.84 +0.5 413,107 - Synpcc7942_0422 0.84 +1.3 413,109 + Synpcc7942_0422 0.84 +0.4 413,117 - -0.8 413,128 + Synpcc7942_0422 0.86 +0.4 413,136 - Synpcc7942_0422 0.87 -1.0 413,219 + -0.3 413,275 - +0.4 413,275 - +0.1 413,332 - -0.2 413,336 + -0.5 413,338 + +0.2 413,341 - -0.7 413,360 - +0.0 413,360 - -0.8 413,362 + +1.2 413,363 - -0.5 413,370 - -2.2 413,373 + +0.3 413,373 + +1.0 413,397 + -0.1 413,400 - +2.0 413,400 - -0.7 413,400 - -0.1 413,423 + Synpcc7942_0423 0.12 -0.3 413,460 + Synpcc7942_0423 0.29 -1.8 413,479 + Synpcc7942_0423 0.38 -0.3 413,487 - Synpcc7942_0423 0.42 -1.8 413,506 + Synpcc7942_0423 0.50 +0.1 413,571 + Synpcc7942_0423 0.80 +0.5 413,611 + -0.1 413,624 + -0.1 413,624 + +0.8 413,632 - +0.2 413,659 - -1.4 413,682 + -1.4 413,684 + +0.3 413,690 - -0.2 413,692 + -0.2 413,692 + -0.8 413,700 - -0.4 413,700 - -0.5 413,995 + -1.2 414,065 - psbAI Synpcc7942_0424 0.18 -0.9 414,068 + psbAI Synpcc7942_0424 0.18 -1.0 414,089 - psbAI Synpcc7942_0424 0.20 -0.8 414,089 - psbAI Synpcc7942_0424 0.20 -0.8 414,190 + psbAI Synpcc7942_0424 0.29 +0.8 414,283 + psbAI Synpcc7942_0424 0.38 +0.6 414,298 + psbAI Synpcc7942_0424 0.39 -0.6 414,325 - psbAI Synpcc7942_0424 0.42 -0.7 414,699 + psbAI Synpcc7942_0424 0.76 +1.2 414,710 + psbAI Synpcc7942_0424 0.77 -0.2 414,760 - psbAI Synpcc7942_0424 0.82 -0.8 414,838 - psbAI Synpcc7942_0424 0.89 -1.4 415,061 + -0.5 415,061 + -0.6 415,069 - -0.6 415,216 - Synpcc7942_0425 0.40 -1.1 415,391 + Synpcc7942_0425 0.87 -0.6 415,393 + Synpcc7942_0425 0.87 +0.6 415,393 + Synpcc7942_0425 0.87 +0.2 415,401 - Synpcc7942_0425 0.89 +0.2 415,436 - +0.1 415,554 + -0.1 415,605 + scpB Synpcc7942_0426 0.13 -0.8 415,607 + scpB Synpcc7942_0426 0.13 -0.0 415,630 - scpB Synpcc7942_0426 0.17 -0.9 415,648 + scpB Synpcc7942_0426 0.20 +0.2 415,738 - scpB Synpcc7942_0426 0.37 -0.1 415,738 - scpB Synpcc7942_0426 0.37 +0.4 415,750 + scpB Synpcc7942_0426 0.39 -0.0 415,758 - scpB Synpcc7942_0426 0.40 -0.1 415,758 - scpB Synpcc7942_0426 0.40 +0.4 415,758 - scpB Synpcc7942_0426 0.40 -0.3 415,768 - scpB Synpcc7942_0426 0.42 -0.2 415,817 + scpB Synpcc7942_0426 0.51 +0.4 415,845 + scpB Synpcc7942_0426 0.56 +0.4 415,879 - scpB Synpcc7942_0426 0.62 -0.8 415,879 - scpB Synpcc7942_0426 0.62 +0.6 415,912 - scpB Synpcc7942_0426 0.68 -0.2 415,922 + scpB Synpcc7942_0426 0.70 -0.1
Or see this region's nucleotide sequence