Experiment: Light Dark first sampling rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0410 and trpA are separated by 168 nucleotides trpA and Synpcc7942_0412 are separated by 30 nucleotides Synpcc7942_0412 and ndhL are separated by 0 nucleotides ndhL and Synpcc7942_0414 are separated by 247 nucleotides
Synpcc7942_0410: Synpcc7942_0410 - hypothetical protein, at 401,750 to 402,022
_0410
Synpcc7942_0411: trpA - tryptophan synthase subunit alpha, at 402,191 to 402,991
trpA
Synpcc7942_0412: Synpcc7942_0412 - hypothetical protein, at 403,022 to 403,351
_0412
Synpcc7942_0413: ndhL - hypothetical protein, at 403,352 to 403,768
ndhL
Synpcc7942_0414: Synpcc7942_0414 - hypothetical protein, at 404,016 to 405,188
_0414
Position (kb) 403
404 Strain fitness (log2 ratio) -2
-1
0
1
2 at 402.056 kb on + strand at 402.056 kb on + strand at 402.065 kb on + strand at 402.073 kb on - strand at 402.079 kb on + strand at 402.159 kb on + strand at 402.174 kb on + strand at 402.197 kb on - strand at 403.028 kb on - strand at 403.070 kb on - strand, within Synpcc7942_0412 at 403.074 kb on + strand, within Synpcc7942_0412 at 403.091 kb on - strand, within Synpcc7942_0412 at 403.176 kb on + strand, within Synpcc7942_0412 at 403.210 kb on + strand, within Synpcc7942_0412 at 403.218 kb on - strand, within Synpcc7942_0412 at 403.221 kb on + strand, within Synpcc7942_0412 at 403.287 kb on + strand, within Synpcc7942_0412 at 403.287 kb on + strand, within Synpcc7942_0412 at 403.287 kb on + strand, within Synpcc7942_0412 at 403.295 kb on - strand, within Synpcc7942_0412 at 403.295 kb on - strand, within Synpcc7942_0412 at 403.295 kb on - strand, within Synpcc7942_0412 at 403.295 kb on - strand, within Synpcc7942_0412 at 403.297 kb on - strand, within Synpcc7942_0412 at 403.559 kb on + strand, within ndhL at 403.570 kb on + strand, within ndhL at 403.572 kb on + strand, within ndhL at 403.572 kb on + strand, within ndhL at 403.580 kb on - strand, within ndhL at 403.580 kb on - strand, within ndhL at 403.595 kb on + strand, within ndhL at 403.968 kb on + strand at 403.994 kb on - strand at 404.005 kb on - strand at 404.093 kb on - strand at 404.139 kb on - strand, within Synpcc7942_0414 at 404.139 kb on - strand, within Synpcc7942_0414 at 404.148 kb on + strand, within Synpcc7942_0414 at 404.155 kb on + strand, within Synpcc7942_0414 at 404.163 kb on - strand, within Synpcc7942_0414 at 404.163 kb on - strand, within Synpcc7942_0414 at 404.186 kb on + strand, within Synpcc7942_0414 at 404.186 kb on + strand, within Synpcc7942_0414 at 404.193 kb on - strand, within Synpcc7942_0414 at 404.249 kb on + strand, within Synpcc7942_0414 at 404.253 kb on + strand, within Synpcc7942_0414 at 404.261 kb on + strand, within Synpcc7942_0414 at 404.261 kb on - strand, within Synpcc7942_0414 at 404.267 kb on - strand, within Synpcc7942_0414 at 404.317 kb on - strand, within Synpcc7942_0414
Per-strain Table
Position Strand Gene LocusTag Fraction Light Dark first sampling rep1 remove 402,056 + +0.0 402,056 + -1.5 402,065 + -0.0 402,073 - +0.1 402,079 + +0.1 402,159 + +0.3 402,174 + +0.8 402,197 - +0.3 403,028 - -2.2 403,070 - Synpcc7942_0412 0.15 +0.1 403,074 + Synpcc7942_0412 0.16 -0.9 403,091 - Synpcc7942_0412 0.21 -0.2 403,176 + Synpcc7942_0412 0.47 -1.2 403,210 + Synpcc7942_0412 0.57 +0.5 403,218 - Synpcc7942_0412 0.59 +0.6 403,221 + Synpcc7942_0412 0.60 -1.7 403,287 + Synpcc7942_0412 0.80 -1.2 403,287 + Synpcc7942_0412 0.80 -1.5 403,287 + Synpcc7942_0412 0.80 -0.4 403,295 - Synpcc7942_0412 0.83 -0.6 403,295 - Synpcc7942_0412 0.83 +0.5 403,295 - Synpcc7942_0412 0.83 -2.1 403,295 - Synpcc7942_0412 0.83 -1.1 403,297 - Synpcc7942_0412 0.83 +1.3 403,559 + ndhL Synpcc7942_0413 0.50 +0.3 403,570 + ndhL Synpcc7942_0413 0.52 -1.2 403,572 + ndhL Synpcc7942_0413 0.53 +0.4 403,572 + ndhL Synpcc7942_0413 0.53 +0.9 403,580 - ndhL Synpcc7942_0413 0.55 -0.9 403,580 - ndhL Synpcc7942_0413 0.55 -0.6 403,595 + ndhL Synpcc7942_0413 0.58 -0.3 403,968 + +2.0 403,994 - -0.9 404,005 - +0.4 404,093 - +0.9 404,139 - Synpcc7942_0414 0.10 +0.1 404,139 - Synpcc7942_0414 0.10 +0.8 404,148 + Synpcc7942_0414 0.11 +1.6 404,155 + Synpcc7942_0414 0.12 +0.5 404,163 - Synpcc7942_0414 0.13 +0.2 404,163 - Synpcc7942_0414 0.13 +1.1 404,186 + Synpcc7942_0414 0.14 -1.2 404,186 + Synpcc7942_0414 0.14 +0.3 404,193 - Synpcc7942_0414 0.15 +1.2 404,249 + Synpcc7942_0414 0.20 +0.7 404,253 + Synpcc7942_0414 0.20 +0.4 404,261 + Synpcc7942_0414 0.21 +0.3 404,261 - Synpcc7942_0414 0.21 +0.4 404,267 - Synpcc7942_0414 0.21 +1.5 404,317 - Synpcc7942_0414 0.26 +0.4
Or see this region's nucleotide sequence