Experiment: Light Dark first sampling rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0386 and Synpcc7942_0387 are separated by 4 nucleotides Synpcc7942_0387 and rfaG overlap by 32 nucleotides rfaG and Synpcc7942_0389 are separated by 89 nucleotides Synpcc7942_0389 and chrA overlap by 30 nucleotides
Synpcc7942_0386: Synpcc7942_0386 - hypothetical protein, at 378,981 to 380,390
_0386
Synpcc7942_0387: Synpcc7942_0387 - hypothetical protein, at 380,395 to 380,901
_0387
Synpcc7942_0388: rfaG - probable glycosyltransferase, at 380,870 to 381,991
rfaG
Synpcc7942_0389: Synpcc7942_0389 - hypothetical protein, at 382,081 to 382,332
_0389
Synpcc7942_0390: chrA - Chromate transporter, at 382,303 to 383,454
chrA
Position (kb) 380
381
382 Strain fitness (log2 ratio) -2
-1
0
1
2 at 380.368 kb on + strand at 380.838 kb on + strand at 380.849 kb on + strand, within Synpcc7942_0387 at 380.857 kb on - strand at 380.859 kb on - strand at 380.868 kb on + strand at 380.868 kb on + strand at 380.868 kb on + strand at 380.868 kb on + strand at 380.868 kb on + strand at 380.868 kb on + strand at 380.868 kb on + strand at 380.868 kb on + strand at 380.868 kb on + strand at 380.871 kb on - strand at 380.876 kb on - strand at 380.876 kb on - strand at 380.876 kb on - strand at 380.876 kb on - strand at 380.876 kb on - strand at 380.876 kb on - strand at 380.876 kb on - strand at 380.876 kb on - strand at 381.058 kb on - strand, within rfaG at 381.127 kb on + strand, within rfaG at 381.127 kb on + strand, within rfaG at 381.225 kb on + strand, within rfaG at 381.398 kb on - strand, within rfaG at 381.477 kb on - strand, within rfaG at 381.478 kb on - strand, within rfaG at 381.541 kb on - strand, within rfaG at 381.806 kb on - strand, within rfaG at 381.827 kb on + strand, within rfaG at 381.931 kb on + strand at 381.941 kb on + strand at 381.942 kb on + strand at 381.959 kb on + strand at 381.972 kb on + strand at 382.016 kb on - strand at 382.016 kb on - strand at 382.065 kb on + strand at 382.065 kb on + strand at 382.065 kb on + strand at 382.073 kb on - strand at 382.073 kb on - strand at 382.075 kb on + strand at 382.083 kb on - strand at 382.083 kb on - strand at 382.090 kb on + strand at 382.090 kb on + strand at 382.092 kb on + strand at 382.095 kb on + strand at 382.100 kb on - strand at 382.100 kb on - strand at 382.100 kb on - strand at 382.117 kb on + strand, within Synpcc7942_0389 at 382.122 kb on + strand, within Synpcc7942_0389 at 382.130 kb on - strand, within Synpcc7942_0389 at 382.143 kb on - strand, within Synpcc7942_0389 at 382.152 kb on - strand, within Synpcc7942_0389 at 382.202 kb on + strand, within Synpcc7942_0389 at 382.214 kb on + strand, within Synpcc7942_0389 at 382.241 kb on + strand, within Synpcc7942_0389 at 382.249 kb on - strand, within Synpcc7942_0389 at 382.257 kb on + strand, within Synpcc7942_0389 at 382.265 kb on - strand, within Synpcc7942_0389 at 382.300 kb on + strand, within Synpcc7942_0389 at 382.301 kb on + strand, within Synpcc7942_0389 at 382.301 kb on + strand, within Synpcc7942_0389 at 382.301 kb on + strand, within Synpcc7942_0389 at 382.301 kb on + strand, within Synpcc7942_0389 at 382.301 kb on + strand, within Synpcc7942_0389 at 382.302 kb on + strand, within Synpcc7942_0389 at 382.309 kb on - strand at 382.309 kb on - strand at 382.309 kb on - strand at 382.309 kb on - strand at 382.309 kb on - strand at 382.309 kb on - strand at 382.309 kb on - strand at 382.309 kb on - strand at 382.316 kb on - strand at 382.316 kb on - strand at 382.327 kb on + strand at 382.327 kb on + strand at 382.327 kb on + strand at 382.327 kb on + strand at 382.328 kb on - strand at 382.335 kb on - strand at 382.335 kb on - strand at 382.337 kb on + strand at 382.342 kb on + strand at 382.361 kb on - strand at 382.400 kb on + strand at 382.408 kb on - strand at 382.446 kb on + strand, within chrA at 382.462 kb on - strand, within chrA at 382.474 kb on - strand, within chrA at 382.474 kb on - strand, within chrA at 382.492 kb on + strand, within chrA at 382.492 kb on + strand, within chrA at 382.492 kb on + strand, within chrA at 382.497 kb on + strand, within chrA at 382.497 kb on + strand, within chrA at 382.497 kb on + strand, within chrA at 382.497 kb on + strand, within chrA at 382.510 kb on - strand, within chrA at 382.511 kb on - strand, within chrA at 382.529 kb on + strand, within chrA at 382.537 kb on - strand, within chrA at 382.565 kb on - strand, within chrA at 382.566 kb on - strand, within chrA at 382.617 kb on + strand, within chrA at 382.627 kb on + strand, within chrA at 382.627 kb on + strand, within chrA at 382.627 kb on + strand, within chrA at 382.627 kb on + strand, within chrA at 382.635 kb on - strand, within chrA at 382.677 kb on + strand at 382.682 kb on + strand, within chrA at 382.687 kb on + strand, within chrA at 382.690 kb on - strand, within chrA at 382.701 kb on + strand, within chrA at 382.741 kb on + strand, within chrA at 382.743 kb on + strand, within chrA at 382.751 kb on + strand, within chrA at 382.759 kb on - strand, within chrA at 382.772 kb on - strand, within chrA at 382.783 kb on + strand, within chrA at 382.794 kb on + strand, within chrA at 382.850 kb on - strand, within chrA at 382.850 kb on - strand, within chrA at 382.928 kb on + strand, within chrA at 382.928 kb on + strand, within chrA at 382.928 kb on + strand, within chrA
Per-strain Table
Position Strand Gene LocusTag Fraction Light Dark first sampling rep1 remove 380,368 + -0.4 380,838 + -0.5 380,849 + Synpcc7942_0387 0.90 +0.5 380,857 - +1.1 380,859 - +1.9 380,868 + -0.6 380,868 + -0.4 380,868 + -1.5 380,868 + +0.2 380,868 + +1.3 380,868 + +1.4 380,868 + -0.7 380,868 + -1.1 380,868 + -0.0 380,871 - +0.9 380,876 - -1.2 380,876 - +1.9 380,876 - +0.9 380,876 - +0.5 380,876 - +0.6 380,876 - -0.1 380,876 - -0.8 380,876 - +0.0 381,058 - rfaG Synpcc7942_0388 0.17 -0.2 381,127 + rfaG Synpcc7942_0388 0.23 +0.2 381,127 + rfaG Synpcc7942_0388 0.23 -2.1 381,225 + rfaG Synpcc7942_0388 0.32 -2.5 381,398 - rfaG Synpcc7942_0388 0.47 -0.4 381,477 - rfaG Synpcc7942_0388 0.54 -0.2 381,478 - rfaG Synpcc7942_0388 0.54 -1.0 381,541 - rfaG Synpcc7942_0388 0.60 -1.0 381,806 - rfaG Synpcc7942_0388 0.83 -1.0 381,827 + rfaG Synpcc7942_0388 0.85 -1.0 381,931 + -0.7 381,941 + -1.0 381,942 + -0.0 381,959 + -0.1 381,972 + -0.4 382,016 - -0.4 382,016 - -0.8 382,065 + -0.7 382,065 + -0.8 382,065 + +0.2 382,073 - +1.6 382,073 - +1.3 382,075 + -0.7 382,083 - +0.2 382,083 - -0.1 382,090 + +0.0 382,090 + -1.0 382,092 + -0.7 382,095 + -1.5 382,100 - -1.2 382,100 - -0.2 382,100 - -0.2 382,117 + Synpcc7942_0389 0.14 +0.2 382,122 + Synpcc7942_0389 0.16 +0.2 382,130 - Synpcc7942_0389 0.19 -0.2 382,143 - Synpcc7942_0389 0.25 +0.3 382,152 - Synpcc7942_0389 0.28 +0.2 382,202 + Synpcc7942_0389 0.48 +0.4 382,214 + Synpcc7942_0389 0.53 -0.6 382,241 + Synpcc7942_0389 0.63 -0.3 382,249 - Synpcc7942_0389 0.67 -0.2 382,257 + Synpcc7942_0389 0.70 -0.6 382,265 - Synpcc7942_0389 0.73 +0.3 382,300 + Synpcc7942_0389 0.87 -1.0 382,301 + Synpcc7942_0389 0.87 +0.3 382,301 + Synpcc7942_0389 0.87 +0.2 382,301 + Synpcc7942_0389 0.87 +0.6 382,301 + Synpcc7942_0389 0.87 +0.3 382,301 + Synpcc7942_0389 0.87 +0.0 382,302 + Synpcc7942_0389 0.88 -0.1 382,309 - -0.1 382,309 - +0.6 382,309 - -0.5 382,309 - +0.0 382,309 - +1.2 382,309 - -0.5 382,309 - +0.9 382,309 - +0.3 382,316 - +0.2 382,316 - +0.4 382,327 + +0.5 382,327 + +0.1 382,327 + -0.8 382,327 + +0.8 382,328 - -0.3 382,335 - +0.3 382,335 - +0.4 382,337 + +0.4 382,342 + +0.3 382,361 - +0.0 382,400 + +0.4 382,408 - -0.4 382,446 + chrA Synpcc7942_0390 0.12 +0.2 382,462 - chrA Synpcc7942_0390 0.14 +0.5 382,474 - chrA Synpcc7942_0390 0.15 -2.1 382,474 - chrA Synpcc7942_0390 0.15 -0.8 382,492 + chrA Synpcc7942_0390 0.16 -0.5 382,492 + chrA Synpcc7942_0390 0.16 +0.0 382,492 + chrA Synpcc7942_0390 0.16 -0.6 382,497 + chrA Synpcc7942_0390 0.17 +0.8 382,497 + chrA Synpcc7942_0390 0.17 +0.1 382,497 + chrA Synpcc7942_0390 0.17 +0.6 382,497 + chrA Synpcc7942_0390 0.17 -0.6 382,510 - chrA Synpcc7942_0390 0.18 -1.0 382,511 - chrA Synpcc7942_0390 0.18 -0.7 382,529 + chrA Synpcc7942_0390 0.20 -0.4 382,537 - chrA Synpcc7942_0390 0.20 -1.7 382,565 - chrA Synpcc7942_0390 0.23 -0.4 382,566 - chrA Synpcc7942_0390 0.23 +0.3 382,617 + chrA Synpcc7942_0390 0.27 +0.6 382,627 + chrA Synpcc7942_0390 0.28 -0.6 382,627 + chrA Synpcc7942_0390 0.28 +0.7 382,627 + chrA Synpcc7942_0390 0.28 -0.8 382,627 + chrA Synpcc7942_0390 0.28 +0.5 382,635 - chrA Synpcc7942_0390 0.29 -0.4 382,677 + -0.8 382,682 + chrA Synpcc7942_0390 0.33 +0.9 382,687 + chrA Synpcc7942_0390 0.33 +0.8 382,690 - chrA Synpcc7942_0390 0.34 -0.2 382,701 + chrA Synpcc7942_0390 0.35 +0.9 382,741 + chrA Synpcc7942_0390 0.38 -0.5 382,743 + chrA Synpcc7942_0390 0.38 -1.1 382,751 + chrA Synpcc7942_0390 0.39 -0.4 382,759 - chrA Synpcc7942_0390 0.40 -0.3 382,772 - chrA Synpcc7942_0390 0.41 +0.9 382,783 + chrA Synpcc7942_0390 0.42 +0.4 382,794 + chrA Synpcc7942_0390 0.43 -0.4 382,850 - chrA Synpcc7942_0390 0.47 +0.4 382,850 - chrA Synpcc7942_0390 0.47 -0.1 382,928 + chrA Synpcc7942_0390 0.54 +0.7 382,928 + chrA Synpcc7942_0390 0.54 -0.8 382,928 + chrA Synpcc7942_0390 0.54 -0.4
Or see this region's nucleotide sequence