Experiment: Light Dark first sampling rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0373 and Synpcc7942_0374 are separated by 265 nucleotides Synpcc7942_0374 and ymxG are separated by 354 nucleotides
Synpcc7942_0373: Synpcc7942_0373 - hypothetical protein, at 366,738 to 368,024
_0373
Synpcc7942_0374: Synpcc7942_0374 - hypothetical protein, at 368,290 to 368,574
_0374
Synpcc7942_0375: ymxG - processing protease, at 368,929 to 370,344
ymxG
Position (kb) 368
369 Strain fitness (log2 ratio) -2
-1
0
1
2 at 367.372 kb on + strand, within Synpcc7942_0373 at 367.383 kb on + strand, within Synpcc7942_0373 at 367.473 kb on - strand, within Synpcc7942_0373 at 367.478 kb on + strand, within Synpcc7942_0373 at 367.485 kb on + strand, within Synpcc7942_0373 at 367.485 kb on + strand, within Synpcc7942_0373 at 367.485 kb on + strand, within Synpcc7942_0373 at 367.485 kb on + strand, within Synpcc7942_0373 at 367.493 kb on - strand, within Synpcc7942_0373 at 367.496 kb on + strand, within Synpcc7942_0373 at 367.555 kb on + strand, within Synpcc7942_0373 at 367.557 kb on - strand, within Synpcc7942_0373 at 367.557 kb on - strand, within Synpcc7942_0373 at 367.563 kb on - strand, within Synpcc7942_0373 at 367.578 kb on + strand, within Synpcc7942_0373 at 367.619 kb on + strand, within Synpcc7942_0373 at 367.635 kb on - strand, within Synpcc7942_0373 at 367.695 kb on + strand, within Synpcc7942_0373 at 367.720 kb on - strand, within Synpcc7942_0373 at 367.720 kb on - strand, within Synpcc7942_0373 at 367.725 kb on + strand, within Synpcc7942_0373 at 367.810 kb on - strand, within Synpcc7942_0373 at 368.207 kb on + strand at 368.208 kb on + strand at 368.215 kb on - strand at 368.476 kb on + strand, within Synpcc7942_0374 at 368.660 kb on - strand at 368.690 kb on + strand at 368.690 kb on + strand at 368.690 kb on + strand at 368.695 kb on - strand at 368.700 kb on + strand at 368.813 kb on - strand at 368.833 kb on + strand at 368.864 kb on - strand at 368.876 kb on + strand at 368.884 kb on - strand at 368.896 kb on + strand at 368.942 kb on - strand at 368.950 kb on + strand at 368.958 kb on - strand at 368.965 kb on + strand at 368.973 kb on - strand at 368.979 kb on + strand at 368.979 kb on + strand at 368.980 kb on + strand at 368.986 kb on + strand at 368.987 kb on + strand at 368.987 kb on - strand at 368.987 kb on - strand at 368.987 kb on - strand at 368.994 kb on - strand at 369.018 kb on + strand at 369.028 kb on - strand at 369.036 kb on + strand at 369.044 kb on - strand at 369.051 kb on + strand at 369.053 kb on + strand at 369.061 kb on - strand at 369.061 kb on - strand at 369.061 kb on - strand at 369.063 kb on + strand at 369.071 kb on - strand, within ymxG at 369.071 kb on - strand, within ymxG at 369.092 kb on + strand, within ymxG at 369.092 kb on + strand, within ymxG at 369.097 kb on + strand, within ymxG at 369.097 kb on + strand, within ymxG at 369.097 kb on + strand, within ymxG at 369.100 kb on - strand, within ymxG at 369.100 kb on - strand, within ymxG at 369.100 kb on - strand, within ymxG at 369.100 kb on - strand, within ymxG at 369.101 kb on - strand, within ymxG at 369.101 kb on - strand, within ymxG at 369.113 kb on - strand, within ymxG at 369.160 kb on + strand, within ymxG at 369.231 kb on + strand, within ymxG at 369.239 kb on - strand, within ymxG at 369.276 kb on + strand, within ymxG at 369.278 kb on + strand, within ymxG at 369.296 kb on - strand, within ymxG at 369.359 kb on + strand, within ymxG at 369.372 kb on - strand, within ymxG at 369.377 kb on - strand, within ymxG at 369.382 kb on - strand, within ymxG at 369.384 kb on - strand, within ymxG at 369.394 kb on - strand, within ymxG at 369.394 kb on - strand, within ymxG at 369.418 kb on + strand, within ymxG at 369.440 kb on + strand, within ymxG at 369.463 kb on + strand, within ymxG at 369.463 kb on + strand, within ymxG at 369.471 kb on - strand, within ymxG at 369.473 kb on + strand, within ymxG at 369.481 kb on - strand, within ymxG at 369.481 kb on - strand, within ymxG at 369.481 kb on - strand, within ymxG at 369.498 kb on + strand, within ymxG at 369.563 kb on + strand, within ymxG
Per-strain Table
Position Strand Gene LocusTag Fraction Light Dark first sampling rep1 remove 367,372 + Synpcc7942_0373 0.49 -0.8 367,383 + Synpcc7942_0373 0.50 -0.7 367,473 - Synpcc7942_0373 0.57 -1.1 367,478 + Synpcc7942_0373 0.57 -0.3 367,485 + Synpcc7942_0373 0.58 -1.2 367,485 + Synpcc7942_0373 0.58 -0.5 367,485 + Synpcc7942_0373 0.58 +0.4 367,485 + Synpcc7942_0373 0.58 -0.2 367,493 - Synpcc7942_0373 0.59 -0.0 367,496 + Synpcc7942_0373 0.59 +0.3 367,555 + Synpcc7942_0373 0.63 +0.1 367,557 - Synpcc7942_0373 0.64 -1.4 367,557 - Synpcc7942_0373 0.64 +0.1 367,563 - Synpcc7942_0373 0.64 -0.3 367,578 + Synpcc7942_0373 0.65 -0.1 367,619 + Synpcc7942_0373 0.68 +0.3 367,635 - Synpcc7942_0373 0.70 -1.5 367,695 + Synpcc7942_0373 0.74 -2.0 367,720 - Synpcc7942_0373 0.76 -0.8 367,720 - Synpcc7942_0373 0.76 +0.2 367,725 + Synpcc7942_0373 0.77 -1.1 367,810 - Synpcc7942_0373 0.83 +0.2 368,207 + +0.3 368,208 + -0.8 368,215 - +0.0 368,476 + Synpcc7942_0374 0.65 +1.2 368,660 - +0.6 368,690 + -0.3 368,690 + -0.5 368,690 + -0.3 368,695 - -1.1 368,700 + -0.2 368,813 - -0.8 368,833 + -0.5 368,864 - +1.1 368,876 + -2.0 368,884 - +0.4 368,896 + +0.0 368,942 - +0.4 368,950 + -0.0 368,958 - +0.5 368,965 + -1.5 368,973 - -0.2 368,979 + -1.1 368,979 + -0.3 368,980 + +0.3 368,986 + -0.5 368,987 + -0.4 368,987 - -0.1 368,987 - +0.0 368,987 - +1.6 368,994 - +0.4 369,018 + -0.2 369,028 - -1.5 369,036 + +0.0 369,044 - -0.1 369,051 + -0.4 369,053 + +1.1 369,061 - -0.7 369,061 - -0.1 369,061 - +0.8 369,063 + -1.2 369,071 - ymxG Synpcc7942_0375 0.10 -1.0 369,071 - ymxG Synpcc7942_0375 0.10 +0.2 369,092 + ymxG Synpcc7942_0375 0.12 +1.0 369,092 + ymxG Synpcc7942_0375 0.12 -0.1 369,097 + ymxG Synpcc7942_0375 0.12 +0.4 369,097 + ymxG Synpcc7942_0375 0.12 +0.4 369,097 + ymxG Synpcc7942_0375 0.12 +0.8 369,100 - ymxG Synpcc7942_0375 0.12 +0.1 369,100 - ymxG Synpcc7942_0375 0.12 -0.1 369,100 - ymxG Synpcc7942_0375 0.12 -1.0 369,100 - ymxG Synpcc7942_0375 0.12 -0.7 369,101 - ymxG Synpcc7942_0375 0.12 -0.2 369,101 - ymxG Synpcc7942_0375 0.12 +1.5 369,113 - ymxG Synpcc7942_0375 0.13 -0.0 369,160 + ymxG Synpcc7942_0375 0.16 -0.4 369,231 + ymxG Synpcc7942_0375 0.21 +0.3 369,239 - ymxG Synpcc7942_0375 0.22 +1.6 369,276 + ymxG Synpcc7942_0375 0.25 -0.4 369,278 + ymxG Synpcc7942_0375 0.25 -1.5 369,296 - ymxG Synpcc7942_0375 0.26 +0.4 369,359 + ymxG Synpcc7942_0375 0.30 -0.8 369,372 - ymxG Synpcc7942_0375 0.31 -0.1 369,377 - ymxG Synpcc7942_0375 0.32 -0.6 369,382 - ymxG Synpcc7942_0375 0.32 +0.2 369,384 - ymxG Synpcc7942_0375 0.32 -0.6 369,394 - ymxG Synpcc7942_0375 0.33 -0.8 369,394 - ymxG Synpcc7942_0375 0.33 -1.0 369,418 + ymxG Synpcc7942_0375 0.35 -0.1 369,440 + ymxG Synpcc7942_0375 0.36 -0.3 369,463 + ymxG Synpcc7942_0375 0.38 -0.1 369,463 + ymxG Synpcc7942_0375 0.38 +1.3 369,471 - ymxG Synpcc7942_0375 0.38 +0.2 369,473 + ymxG Synpcc7942_0375 0.38 -1.0 369,481 - ymxG Synpcc7942_0375 0.39 +1.9 369,481 - ymxG Synpcc7942_0375 0.39 -1.4 369,481 - ymxG Synpcc7942_0375 0.39 +1.3 369,498 + ymxG Synpcc7942_0375 0.40 -1.4 369,563 + ymxG Synpcc7942_0375 0.45 -0.9
Or see this region's nucleotide sequence