Experiment: Light Dark first sampling rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0329 and atp1 are separated by 36 nucleotides atp1 and atpI are separated by 25 nucleotides atpI and atpH are separated by 142 nucleotides atpH and atpG are separated by 144 nucleotides
Synpcc7942_0329: Synpcc7942_0329 - hypothetical protein, at 326,113 to 327,357
_0329
Synpcc7942_0330: atp1 - hypothetical protein, at 327,394 to 327,900
atp1
Synpcc7942_0331: atpI - F0F1 ATP synthase subunit A, at 327,926 to 328,711
atpI
Synpcc7942_0332: atpH - F0F1 ATP synthase subunit C, at 328,854 to 329,099
atpH
Synpcc7942_0333: atpG - F0F1 ATP synthase subunit B', at 329,244 to 329,720
atpG
Position (kb) 327
328
329 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 326.966 kb on + strand, within Synpcc7942_0329 at 326.971 kb on - strand, within Synpcc7942_0329 at 326.974 kb on - strand, within Synpcc7942_0329 at 326.974 kb on - strand, within Synpcc7942_0329 at 326.974 kb on - strand, within Synpcc7942_0329 at 327.069 kb on - strand, within Synpcc7942_0329 at 327.081 kb on + strand, within Synpcc7942_0329 at 327.084 kb on - strand, within Synpcc7942_0329 at 327.095 kb on + strand, within Synpcc7942_0329 at 327.103 kb on - strand, within Synpcc7942_0329 at 327.153 kb on - strand, within Synpcc7942_0329 at 327.199 kb on - strand, within Synpcc7942_0329 at 327.199 kb on - strand, within Synpcc7942_0329 at 327.199 kb on - strand, within Synpcc7942_0329 at 327.206 kb on - strand, within Synpcc7942_0329 at 327.209 kb on - strand, within Synpcc7942_0329 at 327.211 kb on + strand, within Synpcc7942_0329 at 327.211 kb on + strand, within Synpcc7942_0329 at 327.219 kb on - strand, within Synpcc7942_0329 at 327.221 kb on + strand, within Synpcc7942_0329 at 327.221 kb on + strand, within Synpcc7942_0329 at 327.229 kb on - strand at 327.229 kb on - strand, within Synpcc7942_0329 at 327.360 kb on - strand at 327.362 kb on + strand at 327.370 kb on - strand at 327.370 kb on - strand at 327.370 kb on - strand at 327.370 kb on - strand at 327.380 kb on - strand at 327.960 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Light Dark first sampling rep1 remove 326,966 + Synpcc7942_0329 0.69 +0.6 326,971 - Synpcc7942_0329 0.69 -0.2 326,974 - Synpcc7942_0329 0.69 -0.0 326,974 - Synpcc7942_0329 0.69 -0.0 326,974 - Synpcc7942_0329 0.69 -0.8 327,069 - Synpcc7942_0329 0.77 +0.7 327,081 + Synpcc7942_0329 0.78 -0.5 327,084 - Synpcc7942_0329 0.78 +0.2 327,095 + Synpcc7942_0329 0.79 -0.7 327,103 - Synpcc7942_0329 0.80 -1.4 327,153 - Synpcc7942_0329 0.84 -0.1 327,199 - Synpcc7942_0329 0.87 +1.3 327,199 - Synpcc7942_0329 0.87 +1.0 327,199 - Synpcc7942_0329 0.87 -0.6 327,206 - Synpcc7942_0329 0.88 -1.6 327,209 - Synpcc7942_0329 0.88 -3.0 327,211 + Synpcc7942_0329 0.88 -1.0 327,211 + Synpcc7942_0329 0.88 -0.1 327,219 - Synpcc7942_0329 0.89 -0.2 327,221 + Synpcc7942_0329 0.89 +1.3 327,221 + Synpcc7942_0329 0.89 +0.1 327,229 - -2.1 327,229 - Synpcc7942_0329 0.90 +0.4 327,360 - -0.9 327,362 + -0.6 327,370 - +1.6 327,370 - +0.7 327,370 - -1.3 327,370 - +1.4 327,380 - -1.0 327,960 - -3.2
Or see this region's nucleotide sequence