Experiment: Light Dark first sampling rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ndhF4 and ispE are separated by 429 nucleotides ispE and ksgA overlap by 4 nucleotides ksgA and Synpcc7942_0312 are separated by 26 nucleotides
Synpcc7942_0309: ndhF4 - NAD(P)H-quinone oxidoreductase subunit F, at 307,139 to 309,043
ndhF4
Synpcc7942_0310: ispE - 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase, at 309,473 to 310,417
ispE
Synpcc7942_0311: ksgA - dimethyladenosine transferase, at 310,414 to 311,253
ksgA
Synpcc7942_0312: Synpcc7942_0312 - hypothetical protein, at 311,280 to 311,708
_0312
Position (kb) 309
310
311 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 308.493 kb on + strand, within ndhF4 at 308.538 kb on + strand, within ndhF4 at 308.572 kb on + strand, within ndhF4 at 308.728 kb on + strand, within ndhF4 at 308.731 kb on - strand, within ndhF4 at 308.736 kb on + strand at 308.736 kb on - strand, within ndhF4 at 308.736 kb on - strand, within ndhF4 at 308.738 kb on + strand, within ndhF4 at 308.741 kb on - strand, within ndhF4 at 308.785 kb on + strand, within ndhF4 at 308.801 kb on - strand, within ndhF4 at 308.825 kb on - strand, within ndhF4 at 308.848 kb on - strand, within ndhF4 at 308.848 kb on - strand, within ndhF4 at 308.864 kb on + strand at 308.941 kb on - strand at 308.964 kb on + strand at 308.964 kb on + strand at 308.972 kb on - strand at 309.114 kb on - strand at 309.131 kb on + strand at 309.139 kb on - strand at 309.165 kb on - strand at 309.165 kb on - strand at 309.184 kb on + strand at 309.193 kb on - strand at 309.215 kb on - strand at 309.220 kb on + strand at 309.261 kb on - strand at 309.287 kb on + strand at 309.287 kb on + strand at 309.296 kb on - strand at 309.323 kb on + strand at 309.344 kb on + strand at 309.355 kb on + strand at 309.359 kb on - strand at 309.439 kb on + strand at 309.486 kb on - strand at 309.489 kb on - strand at 310.455 kb on + strand at 310.455 kb on + strand at 310.479 kb on + strand at 310.479 kb on + strand at 310.519 kb on + strand, within ksgA at 310.553 kb on + strand at 310.555 kb on + strand, within ksgA at 310.555 kb on + strand, within ksgA at 310.561 kb on - strand, within ksgA at 310.563 kb on - strand, within ksgA at 310.563 kb on - strand at 310.568 kb on - strand, within ksgA at 310.573 kb on - strand at 310.632 kb on + strand, within ksgA at 310.632 kb on + strand, within ksgA at 310.640 kb on - strand at 310.650 kb on + strand at 310.662 kb on + strand, within ksgA at 310.694 kb on + strand, within ksgA at 310.722 kb on - strand, within ksgA at 310.738 kb on - strand at 310.750 kb on + strand, within ksgA at 310.751 kb on + strand, within ksgA at 310.751 kb on + strand at 310.794 kb on + strand, within ksgA at 310.800 kb on + strand at 310.802 kb on - strand, within ksgA at 310.802 kb on - strand at 310.916 kb on - strand, within ksgA at 310.951 kb on - strand, within ksgA at 311.009 kb on - strand at 311.034 kb on - strand, within ksgA at 311.103 kb on - strand, within ksgA at 311.135 kb on - strand, within ksgA at 311.210 kb on + strand at 311.215 kb on - strand at 311.226 kb on - strand at 311.238 kb on - strand at 311.244 kb on - strand at 311.260 kb on + strand at 311.263 kb on - strand at 311.263 kb on - strand at 311.263 kb on - strand at 311.301 kb on + strand at 311.301 kb on + strand at 311.307 kb on - strand at 311.307 kb on - strand at 311.308 kb on + strand at 311.330 kb on + strand, within Synpcc7942_0312 at 311.330 kb on + strand, within Synpcc7942_0312 at 311.330 kb on - strand, within Synpcc7942_0312 at 311.338 kb on - strand, within Synpcc7942_0312 at 311.338 kb on - strand, within Synpcc7942_0312 at 311.340 kb on + strand, within Synpcc7942_0312 at 311.348 kb on - strand, within Synpcc7942_0312 at 311.348 kb on - strand, within Synpcc7942_0312 at 311.369 kb on + strand at 311.374 kb on + strand, within Synpcc7942_0312 at 311.380 kb on + strand, within Synpcc7942_0312 at 311.384 kb on - strand, within Synpcc7942_0312 at 311.397 kb on + strand, within Synpcc7942_0312 at 311.416 kb on - strand, within Synpcc7942_0312
Per-strain Table
Position Strand Gene LocusTag Fraction Light Dark first sampling rep1 remove 308,493 + ndhF4 Synpcc7942_0309 0.71 -0.5 308,538 + ndhF4 Synpcc7942_0309 0.73 +0.1 308,572 + ndhF4 Synpcc7942_0309 0.75 +0.2 308,728 + ndhF4 Synpcc7942_0309 0.83 +0.2 308,731 - ndhF4 Synpcc7942_0309 0.84 -1.8 308,736 + -0.4 308,736 - ndhF4 Synpcc7942_0309 0.84 +1.3 308,736 - ndhF4 Synpcc7942_0309 0.84 +1.2 308,738 + ndhF4 Synpcc7942_0309 0.84 -0.1 308,741 - ndhF4 Synpcc7942_0309 0.84 +0.8 308,785 + ndhF4 Synpcc7942_0309 0.86 +0.8 308,801 - ndhF4 Synpcc7942_0309 0.87 -1.1 308,825 - ndhF4 Synpcc7942_0309 0.89 -1.4 308,848 - ndhF4 Synpcc7942_0309 0.90 +0.2 308,848 - ndhF4 Synpcc7942_0309 0.90 +0.0 308,864 + -0.9 308,941 - -2.2 308,964 + -1.6 308,964 + +0.2 308,972 - -1.2 309,114 - -2.8 309,131 + +0.0 309,139 - -1.0 309,165 - -0.7 309,165 - +0.0 309,184 + +0.4 309,193 - -2.8 309,215 - -0.1 309,220 + +0.2 309,261 - +0.2 309,287 + -0.3 309,287 + +0.5 309,296 - +0.6 309,323 + +0.0 309,344 + -0.2 309,355 + -1.2 309,359 - +1.6 309,439 + +1.0 309,486 - +1.0 309,489 - -1.4 310,455 + +0.2 310,455 + +0.3 310,479 + +0.3 310,479 + +0.3 310,519 + ksgA Synpcc7942_0311 0.12 -0.5 310,553 + +0.3 310,555 + ksgA Synpcc7942_0311 0.17 +0.6 310,555 + ksgA Synpcc7942_0311 0.17 -0.5 310,561 - ksgA Synpcc7942_0311 0.17 +0.7 310,563 - ksgA Synpcc7942_0311 0.18 +1.0 310,563 - +0.6 310,568 - ksgA Synpcc7942_0311 0.18 +1.1 310,573 - +0.5 310,632 + ksgA Synpcc7942_0311 0.26 -0.2 310,632 + ksgA Synpcc7942_0311 0.26 -0.7 310,640 - +0.3 310,650 + +0.9 310,662 + ksgA Synpcc7942_0311 0.30 -0.8 310,694 + ksgA Synpcc7942_0311 0.33 -0.1 310,722 - ksgA Synpcc7942_0311 0.37 +0.7 310,738 - +0.6 310,750 + ksgA Synpcc7942_0311 0.40 +0.3 310,751 + ksgA Synpcc7942_0311 0.40 +0.4 310,751 + +0.3 310,794 + ksgA Synpcc7942_0311 0.45 -0.3 310,800 + -1.3 310,802 - ksgA Synpcc7942_0311 0.46 -0.0 310,802 - -0.1 310,916 - ksgA Synpcc7942_0311 0.60 -0.6 310,951 - ksgA Synpcc7942_0311 0.64 -0.2 311,009 - -1.6 311,034 - ksgA Synpcc7942_0311 0.74 +1.5 311,103 - ksgA Synpcc7942_0311 0.82 -0.5 311,135 - ksgA Synpcc7942_0311 0.86 -0.7 311,210 + -0.1 311,215 - -0.6 311,226 - -0.0 311,238 - -0.9 311,244 - +0.3 311,260 + -1.0 311,263 - +0.4 311,263 - +0.0 311,263 - +0.1 311,301 + -0.7 311,301 + -0.1 311,307 - +0.4 311,307 - +0.1 311,308 + +0.2 311,330 + Synpcc7942_0312 0.12 -1.0 311,330 + Synpcc7942_0312 0.12 -0.2 311,330 - Synpcc7942_0312 0.12 +0.3 311,338 - Synpcc7942_0312 0.14 +0.6 311,338 - Synpcc7942_0312 0.14 -0.7 311,340 + Synpcc7942_0312 0.14 -0.3 311,348 - Synpcc7942_0312 0.16 -0.8 311,348 - Synpcc7942_0312 0.16 -0.2 311,369 + +1.0 311,374 + Synpcc7942_0312 0.22 +0.4 311,380 + Synpcc7942_0312 0.23 +0.3 311,384 - Synpcc7942_0312 0.24 +1.3 311,397 + Synpcc7942_0312 0.27 -0.1 311,416 - Synpcc7942_0312 0.32 -1.1
Or see this region's nucleotide sequence