Experiment: Light Dark first sampling rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt uppS and Synpcc7942_0265 are separated by 12 nucleotides Synpcc7942_0265 and dnaJ4 overlap by 23 nucleotides dnaJ4 and gidB are separated by 561 nucleotides
Synpcc7942_0264: uppS - Undecaprenyl pyrophosphate synthetase, at 261,617 to 262,372
uppS
Synpcc7942_0265: Synpcc7942_0265 - hypothetical protein, at 262,385 to 262,660
_0265
Synpcc7942_0266: dnaJ4 - Heat shock protein DnaJ-like, at 262,638 to 263,195
dnaJ4
Synpcc7942_0267: gidB - glucose-inhibited division protein B, at 263,757 to 264,485
gidB
Position (kb) 262
263
264 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 262.367 kb on + strand at 262.381 kb on - strand at 262.383 kb on + strand at 262.386 kb on - strand at 262.397 kb on - strand at 262.417 kb on + strand, within Synpcc7942_0265 at 262.422 kb on + strand, within Synpcc7942_0265 at 262.422 kb on - strand, within Synpcc7942_0265 at 262.453 kb on + strand, within Synpcc7942_0265 at 262.454 kb on + strand, within Synpcc7942_0265 at 262.462 kb on - strand, within Synpcc7942_0265 at 262.479 kb on + strand, within Synpcc7942_0265 at 262.503 kb on + strand, within Synpcc7942_0265 at 262.503 kb on + strand, within Synpcc7942_0265 at 262.514 kb on + strand, within Synpcc7942_0265 at 262.535 kb on + strand, within Synpcc7942_0265 at 262.545 kb on + strand, within Synpcc7942_0265 at 262.553 kb on + strand, within Synpcc7942_0265 at 262.561 kb on - strand, within Synpcc7942_0265 at 262.641 kb on - strand at 262.643 kb on - strand at 262.656 kb on + strand at 262.711 kb on - strand, within dnaJ4 at 262.718 kb on - strand, within dnaJ4 at 262.733 kb on - strand, within dnaJ4 at 262.754 kb on + strand, within dnaJ4 at 262.789 kb on + strand, within dnaJ4 at 262.797 kb on - strand at 262.797 kb on - strand, within dnaJ4 at 262.799 kb on + strand, within dnaJ4 at 262.818 kb on - strand, within dnaJ4 at 262.827 kb on + strand, within dnaJ4 at 262.827 kb on + strand, within dnaJ4 at 262.827 kb on + strand, within dnaJ4 at 262.881 kb on - strand, within dnaJ4 at 262.897 kb on + strand, within dnaJ4 at 262.908 kb on + strand, within dnaJ4 at 262.927 kb on + strand, within dnaJ4 at 262.928 kb on + strand, within dnaJ4 at 262.936 kb on - strand at 262.941 kb on - strand, within dnaJ4 at 262.946 kb on - strand, within dnaJ4 at 262.963 kb on + strand, within dnaJ4 at 262.966 kb on - strand, within dnaJ4 at 262.971 kb on - strand, within dnaJ4 at 262.989 kb on + strand, within dnaJ4 at 263.011 kb on + strand, within dnaJ4 at 263.022 kb on - strand, within dnaJ4 at 263.024 kb on - strand, within dnaJ4 at 263.034 kb on - strand, within dnaJ4 at 263.034 kb on - strand, within dnaJ4 at 263.053 kb on + strand, within dnaJ4 at 263.068 kb on + strand, within dnaJ4 at 263.076 kb on - strand, within dnaJ4 at 263.076 kb on - strand, within dnaJ4 at 263.076 kb on - strand, within dnaJ4 at 263.102 kb on + strand, within dnaJ4 at 263.109 kb on - strand, within dnaJ4 at 263.109 kb on - strand, within dnaJ4 at 263.111 kb on + strand, within dnaJ4 at 263.116 kb on + strand, within dnaJ4 at 263.119 kb on - strand, within dnaJ4 at 263.119 kb on - strand, within dnaJ4 at 263.124 kb on - strand, within dnaJ4 at 263.124 kb on - strand, within dnaJ4 at 263.178 kb on - strand at 263.185 kb on - strand at 263.195 kb on - strand at 263.225 kb on + strand at 263.230 kb on + strand at 263.233 kb on - strand at 263.237 kb on - strand at 263.238 kb on - strand at 263.267 kb on + strand at 263.296 kb on + strand at 263.525 kb on - strand at 263.603 kb on + strand at 263.603 kb on + strand at 263.603 kb on + strand at 263.603 kb on + strand at 263.603 kb on + strand at 263.603 kb on + strand at 263.603 kb on + strand at 263.609 kb on - strand at 263.611 kb on - strand at 263.611 kb on - strand at 263.611 kb on - strand at 263.611 kb on - strand at 263.611 kb on - strand at 263.611 kb on - strand at 263.611 kb on - strand at 263.611 kb on - strand at 263.611 kb on - strand at 263.611 kb on - strand at 263.611 kb on - strand at 263.621 kb on + strand at 263.623 kb on - strand at 263.624 kb on - strand at 263.631 kb on + strand at 263.637 kb on + strand at 263.637 kb on + strand at 263.637 kb on + strand at 263.674 kb on + strand at 263.723 kb on + strand at 263.736 kb on + strand at 263.737 kb on + strand at 263.761 kb on + strand at 263.799 kb on + strand at 263.800 kb on + strand at 263.806 kb on - strand at 263.815 kb on + strand at 263.821 kb on - strand at 263.821 kb on - strand at 263.821 kb on - strand at 263.832 kb on + strand, within gidB at 263.847 kb on + strand, within gidB at 263.855 kb on - strand, within gidB at 263.896 kb on + strand, within gidB at 263.896 kb on + strand, within gidB at 263.939 kb on + strand, within gidB at 263.955 kb on + strand, within gidB at 264.013 kb on + strand, within gidB at 264.021 kb on - strand, within gidB at 264.041 kb on + strand, within gidB at 264.055 kb on - strand, within gidB at 264.060 kb on - strand, within gidB at 264.075 kb on - strand, within gidB at 264.100 kb on + strand, within gidB at 264.119 kb on + strand, within gidB at 264.119 kb on + strand, within gidB at 264.119 kb on - strand, within gidB at 264.153 kb on + strand, within gidB at 264.156 kb on + strand, within gidB at 264.186 kb on + strand, within gidB
Per-strain Table
Position Strand Gene LocusTag Fraction Light Dark first sampling rep1 remove 262,367 + +0.3 262,381 - -0.8 262,383 + -0.2 262,386 - +0.2 262,397 - -1.4 262,417 + Synpcc7942_0265 0.12 +0.8 262,422 + Synpcc7942_0265 0.13 -0.2 262,422 - Synpcc7942_0265 0.13 +0.6 262,453 + Synpcc7942_0265 0.25 +0.4 262,454 + Synpcc7942_0265 0.25 -0.3 262,462 - Synpcc7942_0265 0.28 -0.4 262,479 + Synpcc7942_0265 0.34 +0.0 262,503 + Synpcc7942_0265 0.43 -3.0 262,503 + Synpcc7942_0265 0.43 -0.4 262,514 + Synpcc7942_0265 0.47 +0.5 262,535 + Synpcc7942_0265 0.54 -0.3 262,545 + Synpcc7942_0265 0.58 -0.2 262,553 + Synpcc7942_0265 0.61 -0.2 262,561 - Synpcc7942_0265 0.64 -0.0 262,641 - -0.6 262,643 - -0.5 262,656 + -0.2 262,711 - dnaJ4 Synpcc7942_0266 0.13 -1.9 262,718 - dnaJ4 Synpcc7942_0266 0.14 -0.2 262,733 - dnaJ4 Synpcc7942_0266 0.17 +1.6 262,754 + dnaJ4 Synpcc7942_0266 0.21 -0.2 262,789 + dnaJ4 Synpcc7942_0266 0.27 -1.7 262,797 - -0.6 262,797 - dnaJ4 Synpcc7942_0266 0.28 +0.6 262,799 + dnaJ4 Synpcc7942_0266 0.29 -1.5 262,818 - dnaJ4 Synpcc7942_0266 0.32 -0.9 262,827 + dnaJ4 Synpcc7942_0266 0.34 +1.3 262,827 + dnaJ4 Synpcc7942_0266 0.34 -1.0 262,827 + dnaJ4 Synpcc7942_0266 0.34 -1.5 262,881 - dnaJ4 Synpcc7942_0266 0.44 +1.6 262,897 + dnaJ4 Synpcc7942_0266 0.46 -0.7 262,908 + dnaJ4 Synpcc7942_0266 0.48 -0.6 262,927 + dnaJ4 Synpcc7942_0266 0.52 -0.7 262,928 + dnaJ4 Synpcc7942_0266 0.52 -0.7 262,936 - +0.3 262,941 - dnaJ4 Synpcc7942_0266 0.54 +0.3 262,946 - dnaJ4 Synpcc7942_0266 0.55 -0.9 262,963 + dnaJ4 Synpcc7942_0266 0.58 -1.6 262,966 - dnaJ4 Synpcc7942_0266 0.59 +0.3 262,971 - dnaJ4 Synpcc7942_0266 0.60 +0.0 262,989 + dnaJ4 Synpcc7942_0266 0.63 -2.1 263,011 + dnaJ4 Synpcc7942_0266 0.67 +1.0 263,022 - dnaJ4 Synpcc7942_0266 0.69 -1.4 263,024 - dnaJ4 Synpcc7942_0266 0.69 -2.8 263,034 - dnaJ4 Synpcc7942_0266 0.71 -2.2 263,034 - dnaJ4 Synpcc7942_0266 0.71 -0.7 263,053 + dnaJ4 Synpcc7942_0266 0.74 +0.0 263,068 + dnaJ4 Synpcc7942_0266 0.77 -1.4 263,076 - dnaJ4 Synpcc7942_0266 0.78 -1.1 263,076 - dnaJ4 Synpcc7942_0266 0.78 -1.0 263,076 - dnaJ4 Synpcc7942_0266 0.78 -0.3 263,102 + dnaJ4 Synpcc7942_0266 0.83 -1.1 263,109 - dnaJ4 Synpcc7942_0266 0.84 +0.0 263,109 - dnaJ4 Synpcc7942_0266 0.84 -0.3 263,111 + dnaJ4 Synpcc7942_0266 0.85 -0.7 263,116 + dnaJ4 Synpcc7942_0266 0.86 -0.3 263,119 - dnaJ4 Synpcc7942_0266 0.86 -0.4 263,119 - dnaJ4 Synpcc7942_0266 0.86 -0.3 263,124 - dnaJ4 Synpcc7942_0266 0.87 +0.5 263,124 - dnaJ4 Synpcc7942_0266 0.87 -0.7 263,178 - -0.4 263,185 - -2.0 263,195 - +0.4 263,225 + +0.5 263,230 + -0.2 263,233 - -0.1 263,237 - -0.8 263,238 - -1.1 263,267 + +0.7 263,296 + +0.3 263,525 - +1.6 263,603 + +1.1 263,603 + +0.0 263,603 + -0.3 263,603 + +0.6 263,603 + -0.3 263,603 + -0.3 263,603 + -0.8 263,609 - +0.4 263,611 - -0.2 263,611 - -0.7 263,611 - +0.1 263,611 - +0.6 263,611 - +0.0 263,611 - -0.2 263,611 - +0.8 263,611 - +2.6 263,611 - +0.1 263,611 - +0.3 263,611 - -0.1 263,621 + +0.2 263,623 - +0.6 263,624 - -0.8 263,631 + -1.0 263,637 + -0.2 263,637 + -1.2 263,637 + -0.6 263,674 + +0.1 263,723 + +0.6 263,736 + -1.9 263,737 + -1.0 263,761 + -2.2 263,799 + -2.3 263,800 + -0.6 263,806 - -1.4 263,815 + +0.0 263,821 - -3.6 263,821 - -2.1 263,821 - -0.4 263,832 + gidB Synpcc7942_0267 0.10 -0.9 263,847 + gidB Synpcc7942_0267 0.12 -1.4 263,855 - gidB Synpcc7942_0267 0.13 -1.6 263,896 + gidB Synpcc7942_0267 0.19 -1.9 263,896 + gidB Synpcc7942_0267 0.19 -2.7 263,939 + gidB Synpcc7942_0267 0.25 -2.2 263,955 + gidB Synpcc7942_0267 0.27 -2.5 264,013 + gidB Synpcc7942_0267 0.35 -0.4 264,021 - gidB Synpcc7942_0267 0.36 -1.7 264,041 + gidB Synpcc7942_0267 0.39 -2.2 264,055 - gidB Synpcc7942_0267 0.41 -0.8 264,060 - gidB Synpcc7942_0267 0.42 -0.7 264,075 - gidB Synpcc7942_0267 0.44 -1.9 264,100 + gidB Synpcc7942_0267 0.47 -2.0 264,119 + gidB Synpcc7942_0267 0.50 -0.6 264,119 + gidB Synpcc7942_0267 0.50 -1.9 264,119 - gidB Synpcc7942_0267 0.50 -2.2 264,153 + gidB Synpcc7942_0267 0.54 -1.8 264,156 + gidB Synpcc7942_0267 0.55 -2.5 264,186 + gidB Synpcc7942_0267 0.59 -0.9
Or see this region's nucleotide sequence