Experiment: Light Dark first sampling rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0230 and Synpcc7942_0231 are separated by 97 nucleotides Synpcc7942_0231 and aroA are separated by 7 nucleotides aroA and Synpcc7942_0233 are separated by 343 nucleotides Synpcc7942_0233 and Synpcc7942_0234 are separated by 103 nucleotides
Synpcc7942_0230: Synpcc7942_0230 - hypothetical protein, at 226,263 to 227,309
_0230
Synpcc7942_0231: Synpcc7942_0231 - putative acetyltransferase, at 227,407 to 227,931
_0231
Synpcc7942_0232: aroA - 3-phosphoshikimate 1-carboxyvinyltransferase, at 227,939 to 229,285
aroA
Synpcc7942_0233: Synpcc7942_0233 - hypothetical protein, at 229,629 to 230,054
_0233
Synpcc7942_0234: Synpcc7942_0234 - hypothetical protein, at 230,158 to 231,150
_0234
Position (kb) 227
228
229
230 Strain fitness (log2 ratio) -2
-1
0
1
2 at 226.966 kb on - strand, within Synpcc7942_0230 at 226.971 kb on - strand, within Synpcc7942_0230 at 227.000 kb on - strand, within Synpcc7942_0230 at 227.009 kb on - strand, within Synpcc7942_0230 at 227.012 kb on + strand, within Synpcc7942_0230 at 227.017 kb on + strand, within Synpcc7942_0230 at 227.017 kb on + strand, within Synpcc7942_0230 at 227.020 kb on - strand, within Synpcc7942_0230 at 227.025 kb on - strand, within Synpcc7942_0230 at 227.025 kb on - strand, within Synpcc7942_0230 at 227.054 kb on + strand, within Synpcc7942_0230 at 227.085 kb on - strand, within Synpcc7942_0230 at 227.106 kb on + strand, within Synpcc7942_0230 at 227.117 kb on + strand, within Synpcc7942_0230 at 227.117 kb on + strand, within Synpcc7942_0230 at 227.117 kb on + strand, within Synpcc7942_0230 at 227.125 kb on - strand, within Synpcc7942_0230 at 227.137 kb on + strand, within Synpcc7942_0230 at 227.137 kb on + strand, within Synpcc7942_0230 at 227.144 kb on - strand, within Synpcc7942_0230 at 227.163 kb on + strand, within Synpcc7942_0230 at 227.171 kb on - strand, within Synpcc7942_0230 at 227.187 kb on + strand, within Synpcc7942_0230 at 227.195 kb on - strand, within Synpcc7942_0230 at 227.201 kb on - strand, within Synpcc7942_0230 at 227.217 kb on - strand at 227.220 kb on - strand at 227.253 kb on + strand at 227.253 kb on + strand at 227.261 kb on - strand at 227.261 kb on - strand at 227.273 kb on - strand at 227.293 kb on - strand at 227.305 kb on + strand at 227.316 kb on + strand at 227.324 kb on - strand at 227.366 kb on + strand at 227.366 kb on + strand at 227.366 kb on + strand at 227.394 kb on - strand at 227.463 kb on + strand, within Synpcc7942_0231 at 227.471 kb on - strand, within Synpcc7942_0231 at 227.473 kb on + strand, within Synpcc7942_0231 at 227.473 kb on + strand, within Synpcc7942_0231 at 227.481 kb on - strand, within Synpcc7942_0231 at 227.481 kb on - strand, within Synpcc7942_0231 at 227.481 kb on - strand, within Synpcc7942_0231 at 227.481 kb on - strand, within Synpcc7942_0231 at 227.481 kb on - strand, within Synpcc7942_0231 at 227.517 kb on + strand, within Synpcc7942_0231 at 227.534 kb on + strand, within Synpcc7942_0231 at 227.552 kb on + strand, within Synpcc7942_0231 at 227.563 kb on - strand, within Synpcc7942_0231 at 227.563 kb on - strand, within Synpcc7942_0231 at 227.578 kb on + strand, within Synpcc7942_0231 at 227.596 kb on + strand, within Synpcc7942_0231 at 227.613 kb on + strand, within Synpcc7942_0231 at 227.622 kb on + strand, within Synpcc7942_0231 at 227.628 kb on + strand, within Synpcc7942_0231 at 227.629 kb on + strand, within Synpcc7942_0231 at 227.636 kb on - strand, within Synpcc7942_0231 at 227.636 kb on - strand, within Synpcc7942_0231 at 227.636 kb on - strand, within Synpcc7942_0231 at 227.637 kb on - strand, within Synpcc7942_0231 at 227.643 kb on - strand, within Synpcc7942_0231 at 227.646 kb on + strand, within Synpcc7942_0231 at 227.646 kb on + strand, within Synpcc7942_0231 at 227.654 kb on - strand, within Synpcc7942_0231 at 227.654 kb on - strand, within Synpcc7942_0231 at 227.654 kb on - strand, within Synpcc7942_0231 at 227.694 kb on + strand, within Synpcc7942_0231 at 227.715 kb on + strand, within Synpcc7942_0231 at 227.773 kb on + strand, within Synpcc7942_0231 at 227.773 kb on + strand, within Synpcc7942_0231 at 227.773 kb on + strand, within Synpcc7942_0231 at 227.791 kb on + strand, within Synpcc7942_0231 at 227.797 kb on - strand, within Synpcc7942_0231 at 227.799 kb on - strand, within Synpcc7942_0231 at 227.830 kb on - strand, within Synpcc7942_0231 at 227.832 kb on - strand, within Synpcc7942_0231 at 227.896 kb on - strand at 227.941 kb on - strand at 229.320 kb on + strand at 229.400 kb on + strand at 229.463 kb on - strand at 229.564 kb on - strand at 229.684 kb on - strand, within Synpcc7942_0233 at 229.796 kb on + strand, within Synpcc7942_0233 at 229.949 kb on + strand, within Synpcc7942_0233 at 229.957 kb on - strand, within Synpcc7942_0233 at 229.991 kb on + strand, within Synpcc7942_0233 at 229.991 kb on + strand, within Synpcc7942_0233 at 229.996 kb on + strand, within Synpcc7942_0233 at 230.021 kb on - strand at 230.075 kb on + strand at 230.080 kb on + strand at 230.083 kb on - strand at 230.083 kb on - strand at 230.106 kb on - strand at 230.114 kb on + strand at 230.114 kb on + strand at 230.114 kb on + strand at 230.122 kb on + strand at 230.123 kb on - strand at 230.123 kb on - strand at 230.155 kb on + strand at 230.165 kb on + strand at 230.177 kb on + strand at 230.187 kb on - strand at 230.220 kb on + strand at 230.241 kb on + strand at 230.242 kb on + strand at 230.249 kb on + strand at 230.266 kb on + strand, within Synpcc7942_0234 at 230.267 kb on + strand, within Synpcc7942_0234 at 230.274 kb on - strand, within Synpcc7942_0234 at 230.274 kb on - strand, within Synpcc7942_0234
Per-strain Table
Position Strand Gene LocusTag Fraction Light Dark first sampling rep1 remove 226,966 - Synpcc7942_0230 0.67 -0.2 226,971 - Synpcc7942_0230 0.68 -0.3 227,000 - Synpcc7942_0230 0.70 -0.8 227,009 - Synpcc7942_0230 0.71 -0.3 227,012 + Synpcc7942_0230 0.72 -0.5 227,017 + Synpcc7942_0230 0.72 +0.3 227,017 + Synpcc7942_0230 0.72 +0.8 227,020 - Synpcc7942_0230 0.72 +0.5 227,025 - Synpcc7942_0230 0.73 +0.4 227,025 - Synpcc7942_0230 0.73 -0.5 227,054 + Synpcc7942_0230 0.76 -1.2 227,085 - Synpcc7942_0230 0.79 +0.0 227,106 + Synpcc7942_0230 0.81 -0.2 227,117 + Synpcc7942_0230 0.82 +1.9 227,117 + Synpcc7942_0230 0.82 +0.2 227,117 + Synpcc7942_0230 0.82 -0.0 227,125 - Synpcc7942_0230 0.82 -0.5 227,137 + Synpcc7942_0230 0.83 -0.3 227,137 + Synpcc7942_0230 0.83 +0.7 227,144 - Synpcc7942_0230 0.84 +0.8 227,163 + Synpcc7942_0230 0.86 +0.7 227,171 - Synpcc7942_0230 0.87 +0.3 227,187 + Synpcc7942_0230 0.88 -0.7 227,195 - Synpcc7942_0230 0.89 -0.1 227,201 - Synpcc7942_0230 0.90 -0.6 227,217 - -1.0 227,220 - +0.1 227,253 + -0.1 227,253 + +0.2 227,261 - -0.1 227,261 - -1.0 227,273 - +0.2 227,293 - +0.8 227,305 + -1.1 227,316 + -0.5 227,324 - +0.2 227,366 + +0.3 227,366 + +0.3 227,366 + -0.4 227,394 - +0.0 227,463 + Synpcc7942_0231 0.11 -0.5 227,471 - Synpcc7942_0231 0.12 +0.5 227,473 + Synpcc7942_0231 0.13 -2.2 227,473 + Synpcc7942_0231 0.13 -0.0 227,481 - Synpcc7942_0231 0.14 -0.5 227,481 - Synpcc7942_0231 0.14 -0.5 227,481 - Synpcc7942_0231 0.14 -2.4 227,481 - Synpcc7942_0231 0.14 +0.3 227,481 - Synpcc7942_0231 0.14 +0.6 227,517 + Synpcc7942_0231 0.21 +0.5 227,534 + Synpcc7942_0231 0.24 +0.3 227,552 + Synpcc7942_0231 0.28 +0.5 227,563 - Synpcc7942_0231 0.30 +0.3 227,563 - Synpcc7942_0231 0.30 +0.1 227,578 + Synpcc7942_0231 0.33 +0.3 227,596 + Synpcc7942_0231 0.36 +0.7 227,613 + Synpcc7942_0231 0.39 +0.2 227,622 + Synpcc7942_0231 0.41 +0.3 227,628 + Synpcc7942_0231 0.42 -0.2 227,629 + Synpcc7942_0231 0.42 -0.9 227,636 - Synpcc7942_0231 0.44 -1.5 227,636 - Synpcc7942_0231 0.44 -1.7 227,636 - Synpcc7942_0231 0.44 +0.5 227,637 - Synpcc7942_0231 0.44 -0.4 227,643 - Synpcc7942_0231 0.45 +0.1 227,646 + Synpcc7942_0231 0.46 -0.6 227,646 + Synpcc7942_0231 0.46 -0.3 227,654 - Synpcc7942_0231 0.47 -0.3 227,654 - Synpcc7942_0231 0.47 -0.2 227,654 - Synpcc7942_0231 0.47 +0.4 227,694 + Synpcc7942_0231 0.55 -0.1 227,715 + Synpcc7942_0231 0.59 -1.1 227,773 + Synpcc7942_0231 0.70 +0.6 227,773 + Synpcc7942_0231 0.70 +0.1 227,773 + Synpcc7942_0231 0.70 -0.3 227,791 + Synpcc7942_0231 0.73 +0.9 227,797 - Synpcc7942_0231 0.74 -0.9 227,799 - Synpcc7942_0231 0.75 +0.5 227,830 - Synpcc7942_0231 0.81 +0.2 227,832 - Synpcc7942_0231 0.81 -0.9 227,896 - -0.9 227,941 - +0.1 229,320 + +0.1 229,400 + -0.6 229,463 - -1.2 229,564 - -2.7 229,684 - Synpcc7942_0233 0.13 +0.4 229,796 + Synpcc7942_0233 0.39 +0.5 229,949 + Synpcc7942_0233 0.75 +0.0 229,957 - Synpcc7942_0233 0.77 +0.4 229,991 + Synpcc7942_0233 0.85 +0.2 229,991 + Synpcc7942_0233 0.85 +0.5 229,996 + Synpcc7942_0233 0.86 +0.3 230,021 - -0.6 230,075 + -0.2 230,080 + +0.2 230,083 - +0.5 230,083 - -0.4 230,106 - +0.2 230,114 + -0.2 230,114 + -1.2 230,114 + +0.0 230,122 + +0.2 230,123 - +1.0 230,123 - -0.8 230,155 + +0.0 230,165 + +0.3 230,177 + -0.2 230,187 - -1.4 230,220 + +0.1 230,241 + -1.6 230,242 + -1.5 230,249 + +0.1 230,266 + Synpcc7942_0234 0.11 -0.2 230,267 + Synpcc7942_0234 0.11 +0.2 230,274 - Synpcc7942_0234 0.12 +0.1 230,274 - Synpcc7942_0234 0.12 -1.7
Or see this region's nucleotide sequence