Experiment: Light Dark first sampling rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ilvB and Synpcc7942_0140 are separated by 126 nucleotides Synpcc7942_0140 and secF overlap by 14 nucleotides secF and secD are separated by 9 nucleotides
Synpcc7942_0139: ilvB - acetolactate synthase 3 catalytic subunit, at 140,268 to 142,106
ilvB
Synpcc7942_0140: Synpcc7942_0140 - hypothetical protein, at 142,233 to 142,631
_0140
Synpcc7942_0141: secF - preprotein translocase subunit SecF, at 142,618 to 143,562
secF
Synpcc7942_0142: secD - preprotein translocase subunit SecD, at 143,572 to 144,966
secD
Position (kb) 142
143
144 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 142.076 kb on + strand at 142.085 kb on + strand at 142.101 kb on + strand at 142.101 kb on + strand at 142.108 kb on - strand at 142.109 kb on - strand at 142.123 kb on + strand at 142.123 kb on + strand at 142.123 kb on + strand at 142.123 kb on + strand at 142.123 kb on + strand at 142.123 kb on + strand at 142.123 kb on + strand at 142.123 kb on + strand at 142.131 kb on - strand at 142.131 kb on - strand at 142.131 kb on - strand at 142.131 kb on - strand at 142.131 kb on - strand at 142.131 kb on - strand at 142.131 kb on - strand at 142.200 kb on + strand at 142.205 kb on + strand at 142.208 kb on - strand at 142.248 kb on - strand at 142.250 kb on + strand at 142.261 kb on + strand at 142.285 kb on + strand, within Synpcc7942_0140 at 142.285 kb on + strand, within Synpcc7942_0140 at 142.384 kb on - strand, within Synpcc7942_0140 at 142.398 kb on + strand, within Synpcc7942_0140 at 142.423 kb on + strand, within Synpcc7942_0140 at 142.423 kb on + strand, within Synpcc7942_0140 at 142.435 kb on + strand, within Synpcc7942_0140 at 142.435 kb on + strand, within Synpcc7942_0140 at 142.435 kb on + strand, within Synpcc7942_0140 at 142.435 kb on + strand, within Synpcc7942_0140 at 142.440 kb on + strand, within Synpcc7942_0140 at 142.440 kb on + strand, within Synpcc7942_0140 at 142.440 kb on + strand, within Synpcc7942_0140 at 142.440 kb on + strand, within Synpcc7942_0140 at 142.440 kb on + strand, within Synpcc7942_0140 at 142.443 kb on - strand, within Synpcc7942_0140 at 142.445 kb on + strand, within Synpcc7942_0140 at 142.453 kb on - strand, within Synpcc7942_0140 at 142.458 kb on - strand, within Synpcc7942_0140 at 142.476 kb on - strand, within Synpcc7942_0140 at 142.486 kb on + strand, within Synpcc7942_0140 at 142.503 kb on - strand, within Synpcc7942_0140 at 142.542 kb on - strand, within Synpcc7942_0140 at 142.544 kb on + strand, within Synpcc7942_0140 at 142.549 kb on - strand, within Synpcc7942_0140 at 143.617 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Light Dark first sampling rep1 remove 142,076 + +0.3 142,085 + +0.9 142,101 + -0.0 142,101 + -0.1 142,108 - +0.9 142,109 - +0.1 142,123 + -0.7 142,123 + -2.0 142,123 + -0.2 142,123 + +0.4 142,123 + -1.4 142,123 + +0.8 142,123 + +0.8 142,123 + -0.2 142,131 - -1.0 142,131 - +0.1 142,131 - -1.0 142,131 - +0.4 142,131 - -0.3 142,131 - -1.5 142,131 - +0.4 142,200 + +0.3 142,205 + +0.4 142,208 - -0.2 142,248 - -2.0 142,250 + +0.2 142,261 + -0.2 142,285 + Synpcc7942_0140 0.13 +0.0 142,285 + Synpcc7942_0140 0.13 +0.5 142,384 - Synpcc7942_0140 0.38 -3.3 142,398 + Synpcc7942_0140 0.41 +0.3 142,423 + Synpcc7942_0140 0.48 +0.6 142,423 + Synpcc7942_0140 0.48 -1.9 142,435 + Synpcc7942_0140 0.51 -1.9 142,435 + Synpcc7942_0140 0.51 +0.5 142,435 + Synpcc7942_0140 0.51 +1.1 142,435 + Synpcc7942_0140 0.51 +0.0 142,440 + Synpcc7942_0140 0.52 -0.4 142,440 + Synpcc7942_0140 0.52 +0.4 142,440 + Synpcc7942_0140 0.52 -1.5 142,440 + Synpcc7942_0140 0.52 -0.3 142,440 + Synpcc7942_0140 0.52 +0.9 142,443 - Synpcc7942_0140 0.53 +1.0 142,445 + Synpcc7942_0140 0.53 -0.6 142,453 - Synpcc7942_0140 0.55 +0.1 142,458 - Synpcc7942_0140 0.56 +0.4 142,476 - Synpcc7942_0140 0.61 +0.0 142,486 + Synpcc7942_0140 0.63 +0.0 142,503 - Synpcc7942_0140 0.68 -0.5 142,542 - Synpcc7942_0140 0.77 +0.5 142,544 + Synpcc7942_0140 0.78 -1.4 142,549 - Synpcc7942_0140 0.79 +0.8 143,617 + -1.4
Or see this region's nucleotide sequence