Experiment: Light Dark first sampling rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt degT and Synpcc7942_0072 are separated by 167 nucleotides Synpcc7942_0072 and lytB are separated by 39 nucleotides lytB and Synpcc7942_0074 are separated by 109 nucleotides Synpcc7942_0074 and pepP are separated by 115 nucleotides
Synpcc7942_0071: degT - pleiotropic regulatory protein-like, at 69,940 to 71,139
degT
Synpcc7942_0072: Synpcc7942_0072 - hypothetical protein, at 71,307 to 71,960
_0072
Synpcc7942_0073: lytB - 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, at 72,000 to 73,196
lytB
Synpcc7942_0074: Synpcc7942_0074 - hypothetical protein, at 73,306 to 73,659
_0074
Synpcc7942_0075: pepP - aminopeptidase P. Metallo peptidase. MEROPS family M24B, at 73,775 to 75,088
pepP
Position (kb) 71
72
73
74 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 71.112 kb on + strand at 71.134 kb on + strand at 71.146 kb on - strand at 71.159 kb on - strand at 71.160 kb on - strand at 71.171 kb on + strand at 71.171 kb on + strand at 71.171 kb on + strand at 71.171 kb on + strand at 71.171 kb on + strand at 71.171 kb on + strand at 71.179 kb on - strand at 71.179 kb on - strand at 71.179 kb on - strand at 71.242 kb on - strand at 71.262 kb on + strand at 71.288 kb on + strand at 71.294 kb on - strand at 71.296 kb on - strand at 71.378 kb on + strand, within Synpcc7942_0072 at 71.386 kb on - strand, within Synpcc7942_0072 at 71.396 kb on - strand, within Synpcc7942_0072 at 71.396 kb on - strand, within Synpcc7942_0072 at 71.431 kb on + strand, within Synpcc7942_0072 at 71.431 kb on + strand, within Synpcc7942_0072 at 71.480 kb on - strand, within Synpcc7942_0072 at 71.485 kb on - strand, within Synpcc7942_0072 at 71.499 kb on - strand, within Synpcc7942_0072 at 71.503 kb on + strand, within Synpcc7942_0072 at 71.511 kb on - strand, within Synpcc7942_0072 at 71.571 kb on - strand, within Synpcc7942_0072 at 71.576 kb on - strand, within Synpcc7942_0072 at 71.604 kb on - strand, within Synpcc7942_0072 at 71.610 kb on + strand, within Synpcc7942_0072 at 71.629 kb on - strand, within Synpcc7942_0072 at 71.634 kb on - strand, within Synpcc7942_0072 at 71.634 kb on - strand, within Synpcc7942_0072 at 71.653 kb on - strand, within Synpcc7942_0072 at 71.661 kb on - strand at 71.694 kb on + strand, within Synpcc7942_0072 at 71.694 kb on + strand, within Synpcc7942_0072 at 71.701 kb on + strand, within Synpcc7942_0072 at 71.709 kb on - strand, within Synpcc7942_0072 at 71.742 kb on - strand, within Synpcc7942_0072 at 71.772 kb on + strand, within Synpcc7942_0072 at 71.817 kb on - strand, within Synpcc7942_0072 at 71.824 kb on - strand, within Synpcc7942_0072 at 71.827 kb on - strand, within Synpcc7942_0072 at 71.834 kb on + strand, within Synpcc7942_0072 at 71.881 kb on - strand, within Synpcc7942_0072 at 71.892 kb on - strand, within Synpcc7942_0072 at 71.903 kb on + strand at 71.911 kb on - strand at 71.918 kb on - strand at 71.918 kb on - strand at 71.942 kb on - strand at 71.962 kb on - strand at 71.966 kb on - strand at 71.972 kb on - strand at 71.974 kb on - strand at 71.998 kb on + strand at 73.252 kb on + strand at 73.260 kb on - strand at 73.330 kb on + strand at 73.336 kb on + strand at 73.344 kb on - strand, within Synpcc7942_0074 at 73.345 kb on - strand, within Synpcc7942_0074 at 73.379 kb on - strand at 73.389 kb on - strand, within Synpcc7942_0074 at 73.389 kb on - strand, within Synpcc7942_0074 at 73.408 kb on + strand, within Synpcc7942_0074 at 73.419 kb on + strand, within Synpcc7942_0074 at 73.422 kb on - strand, within Synpcc7942_0074 at 73.426 kb on + strand, within Synpcc7942_0074 at 73.433 kb on + strand, within Synpcc7942_0074 at 73.433 kb on + strand, within Synpcc7942_0074 at 73.441 kb on - strand, within Synpcc7942_0074 at 73.441 kb on - strand, within Synpcc7942_0074 at 73.474 kb on - strand, within Synpcc7942_0074 at 73.484 kb on + strand, within Synpcc7942_0074 at 73.489 kb on + strand, within Synpcc7942_0074 at 73.496 kb on - strand, within Synpcc7942_0074 at 73.497 kb on - strand, within Synpcc7942_0074 at 73.503 kb on + strand at 73.525 kb on - strand, within Synpcc7942_0074 at 73.525 kb on - strand, within Synpcc7942_0074 at 73.526 kb on + strand, within Synpcc7942_0074 at 73.543 kb on + strand, within Synpcc7942_0074 at 73.543 kb on + strand, within Synpcc7942_0074 at 73.544 kb on - strand, within Synpcc7942_0074 at 73.545 kb on + strand, within Synpcc7942_0074 at 73.551 kb on - strand at 73.553 kb on - strand, within Synpcc7942_0074 at 73.568 kb on - strand, within Synpcc7942_0074 at 73.580 kb on + strand, within Synpcc7942_0074 at 73.592 kb on + strand, within Synpcc7942_0074 at 73.597 kb on + strand, within Synpcc7942_0074 at 73.600 kb on - strand, within Synpcc7942_0074 at 73.600 kb on - strand, within Synpcc7942_0074 at 73.605 kb on - strand, within Synpcc7942_0074 at 73.619 kb on + strand, within Synpcc7942_0074 at 73.619 kb on + strand, within Synpcc7942_0074 at 73.619 kb on + strand, within Synpcc7942_0074 at 73.619 kb on + strand, within Synpcc7942_0074 at 73.619 kb on + strand, within Synpcc7942_0074 at 73.619 kb on + strand, within Synpcc7942_0074 at 73.622 kb on - strand, within Synpcc7942_0074 at 73.627 kb on - strand at 73.627 kb on - strand at 73.649 kb on + strand at 73.657 kb on - strand at 73.678 kb on + strand at 73.737 kb on - strand at 73.767 kb on + strand at 73.772 kb on + strand at 73.775 kb on - strand at 73.778 kb on + strand at 73.780 kb on - strand at 73.883 kb on + strand at 73.901 kb on - strand at 74.055 kb on - strand, within pepP at 74.196 kb on + strand, within pepP
Per-strain Table
Position Strand Gene LocusTag Fraction Light Dark first sampling rep1 remove 71,112 + +0.2 71,134 + -0.1 71,146 - -0.3 71,159 - -0.2 71,160 - -0.1 71,171 + -1.1 71,171 + -0.6 71,171 + -0.7 71,171 + +0.2 71,171 + -0.6 71,171 + +0.3 71,179 - +0.0 71,179 - -2.1 71,179 - +0.4 71,242 - -0.4 71,262 + +2.0 71,288 + -0.3 71,294 - -0.2 71,296 - -0.2 71,378 + Synpcc7942_0072 0.11 -2.1 71,386 - Synpcc7942_0072 0.12 +0.0 71,396 - Synpcc7942_0072 0.14 -0.5 71,396 - Synpcc7942_0072 0.14 -1.3 71,431 + Synpcc7942_0072 0.19 +0.0 71,431 + Synpcc7942_0072 0.19 +0.3 71,480 - Synpcc7942_0072 0.26 -0.1 71,485 - Synpcc7942_0072 0.27 -1.4 71,499 - Synpcc7942_0072 0.29 -2.2 71,503 + Synpcc7942_0072 0.30 -1.7 71,511 - Synpcc7942_0072 0.31 +0.0 71,571 - Synpcc7942_0072 0.40 +0.6 71,576 - Synpcc7942_0072 0.41 +0.0 71,604 - Synpcc7942_0072 0.45 -0.7 71,610 + Synpcc7942_0072 0.46 -1.9 71,629 - Synpcc7942_0072 0.49 -2.1 71,634 - Synpcc7942_0072 0.50 -1.5 71,634 - Synpcc7942_0072 0.50 -2.2 71,653 - Synpcc7942_0072 0.53 -0.4 71,661 - +0.2 71,694 + Synpcc7942_0072 0.59 +0.1 71,694 + Synpcc7942_0072 0.59 -1.4 71,701 + Synpcc7942_0072 0.60 -2.8 71,709 - Synpcc7942_0072 0.61 -0.1 71,742 - Synpcc7942_0072 0.67 -2.2 71,772 + Synpcc7942_0072 0.71 -1.6 71,817 - Synpcc7942_0072 0.78 -1.7 71,824 - Synpcc7942_0072 0.79 -2.1 71,827 - Synpcc7942_0072 0.80 -1.2 71,834 + Synpcc7942_0072 0.81 -1.0 71,881 - Synpcc7942_0072 0.88 -1.6 71,892 - Synpcc7942_0072 0.89 -1.1 71,903 + -0.2 71,911 - -1.6 71,918 - -0.6 71,918 - +0.1 71,942 - +0.6 71,962 - -1.0 71,966 - -1.7 71,972 - -0.4 71,974 - -2.1 71,998 + -0.1 73,252 + -0.3 73,260 - -1.0 73,330 + +0.4 73,336 + -2.4 73,344 - Synpcc7942_0074 0.11 +0.2 73,345 - Synpcc7942_0074 0.11 +0.7 73,379 - +0.6 73,389 - Synpcc7942_0074 0.23 +0.6 73,389 - Synpcc7942_0074 0.23 -0.3 73,408 + Synpcc7942_0074 0.29 +0.2 73,419 + Synpcc7942_0074 0.32 +0.0 73,422 - Synpcc7942_0074 0.33 -1.6 73,426 + Synpcc7942_0074 0.34 -0.3 73,433 + Synpcc7942_0074 0.36 -0.6 73,433 + Synpcc7942_0074 0.36 -1.3 73,441 - Synpcc7942_0074 0.38 -0.7 73,441 - Synpcc7942_0074 0.38 +0.2 73,474 - Synpcc7942_0074 0.47 -1.7 73,484 + Synpcc7942_0074 0.50 +0.4 73,489 + Synpcc7942_0074 0.52 +0.1 73,496 - Synpcc7942_0074 0.54 -0.3 73,497 - Synpcc7942_0074 0.54 -1.5 73,503 + +1.0 73,525 - Synpcc7942_0074 0.62 -0.6 73,525 - Synpcc7942_0074 0.62 -0.4 73,526 + Synpcc7942_0074 0.62 -0.5 73,543 + Synpcc7942_0074 0.67 -0.8 73,543 + Synpcc7942_0074 0.67 -1.0 73,544 - Synpcc7942_0074 0.67 +1.0 73,545 + Synpcc7942_0074 0.68 -0.5 73,551 - -1.2 73,553 - Synpcc7942_0074 0.70 +0.6 73,568 - Synpcc7942_0074 0.74 +0.3 73,580 + Synpcc7942_0074 0.77 -0.5 73,592 + Synpcc7942_0074 0.81 +0.2 73,597 + Synpcc7942_0074 0.82 -0.5 73,600 - Synpcc7942_0074 0.83 +0.0 73,600 - Synpcc7942_0074 0.83 -0.0 73,605 - Synpcc7942_0074 0.84 -0.1 73,619 + Synpcc7942_0074 0.88 -0.3 73,619 + Synpcc7942_0074 0.88 +0.0 73,619 + Synpcc7942_0074 0.88 -0.7 73,619 + Synpcc7942_0074 0.88 +0.6 73,619 + Synpcc7942_0074 0.88 +0.1 73,619 + Synpcc7942_0074 0.88 +0.1 73,622 - Synpcc7942_0074 0.89 -0.4 73,627 - -0.3 73,627 - -0.1 73,649 + -1.0 73,657 - +0.0 73,678 + -0.0 73,737 - -0.1 73,767 + -1.4 73,772 + -2.7 73,775 - -1.2 73,778 + -0.9 73,780 - +0.3 73,883 + -0.6 73,901 - +0.3 74,055 - pepP Synpcc7942_0075 0.21 -0.4 74,196 + pepP Synpcc7942_0075 0.32 +0.7
Or see this region's nucleotide sequence