Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_0033

Experiment: Light Dark first sampling rep1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntbioA and Synpcc7942_0032 are separated by 110 nucleotidesSynpcc7942_0032 and Synpcc7942_0033 overlap by 29 nucleotidesSynpcc7942_0033 and Synpcc7942_0034 are separated by 178 nucleotidesSynpcc7942_0034 and Synpcc7942_0035 are separated by 558 nucleotides Synpcc7942_0031: bioA - aminotransferase, at 31,464 to 32,738 bioA Synpcc7942_0032: Synpcc7942_0032 - hypothetical protein, at 32,849 to 33,202 _0032 Synpcc7942_0033: Synpcc7942_0033 - hypothetical protein, at 33,174 to 33,506 _0033 Synpcc7942_0034: Synpcc7942_0034 - N-acetylornithine aminotransferase, at 33,685 to 33,798 _0034 Synpcc7942_0035: Synpcc7942_0035 - hypothetical protein, at 34,357 to 35,115 _0035 Position (kb) 33 34Strain fitness (log2 ratio) -2 -1 0 1 2 3at 32.840 kb on - strandat 32.855 kb on - strandat 32.855 kb on - strandat 32.894 kb on - strand, within Synpcc7942_0032at 32.919 kb on + strand, within Synpcc7942_0032at 32.927 kb on - strand, within Synpcc7942_0032at 33.047 kb on - strand, within Synpcc7942_0032at 33.097 kb on + strand, within Synpcc7942_0032at 33.097 kb on + strand, within Synpcc7942_0032at 33.236 kb on + strand, within Synpcc7942_0033at 33.254 kb on - strand, within Synpcc7942_0033at 33.526 kb on + strandat 33.551 kb on + strandat 33.561 kb on + strandat 33.562 kb on + strandat 33.562 kb on + strandat 33.567 kb on + strandat 33.590 kb on - strandat 33.613 kb on + strandat 33.677 kb on + strandat 33.677 kb on + strandat 33.682 kb on + strandat 33.685 kb on - strandat 33.685 kb on - strandat 33.685 kb on - strandat 33.685 kb on - strandat 33.685 kb on - strandat 33.685 kb on - strandat 33.685 kb on - strandat 33.685 kb on - strandat 33.734 kb on + strand, within Synpcc7942_0034at 33.742 kb on - strand, within Synpcc7942_0034at 33.904 kb on - strandat 34.092 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Light Dark first sampling rep1
remove
32,840 - -1.3
32,855 - -0.3
32,855 - -2.3
32,894 - Synpcc7942_0032 0.13 +0.1
32,919 + Synpcc7942_0032 0.20 -1.3
32,927 - Synpcc7942_0032 0.22 +0.7
33,047 - Synpcc7942_0032 0.56 -1.3
33,097 + Synpcc7942_0032 0.70 +0.4
33,097 + Synpcc7942_0032 0.70 +0.3
33,236 + Synpcc7942_0033 0.19 -2.0
33,254 - Synpcc7942_0033 0.24 -0.2
33,526 + +0.1
33,551 + -0.6
33,561 + -0.5
33,562 + -0.3
33,562 + -1.0
33,567 + -0.9
33,590 - -1.0
33,613 + +3.2
33,677 + -0.1
33,677 + -0.6
33,682 + +0.5
33,685 - +0.5
33,685 - -0.8
33,685 - -0.5
33,685 - -0.1
33,685 - -2.6
33,685 - +0.5
33,685 - +0.3
33,685 - +0.3
33,734 + Synpcc7942_0034 0.43 +0.5
33,742 - Synpcc7942_0034 0.50 +0.2
33,904 - -0.3
34,092 + -0.5

Or see this region's nucleotide sequence