Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS00515

Experiment: Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS00510 and RS_RS00515 overlap by 3 nucleotidesRS_RS00515 and RS_RS25235 are separated by 267 nucleotides RS_RS00510: RS_RS00510 - IS630 family transposase ISRso5, at 117,992 to 119,083 _RS00510 RS_RS00515: RS_RS00515 - hemolysin, at 119,081 to 121,909 _RS00515 RS_RS25235: RS_RS25235 - hypothetical protein, at 122,177 to 122,956 _RS25235 Position (kb) 119 120 121 122Strain fitness (log2 ratio) -1 0 1 2at 119.228 kb on - strandat 119.275 kb on + strandat 119.275 kb on + strandat 119.276 kb on - strandat 119.276 kb on - strandat 119.276 kb on - strandat 119.276 kb on - strandat 119.276 kb on - strandat 119.276 kb on - strandat 119.276 kb on - strandat 119.276 kb on - strandat 119.432 kb on + strand, within RS_RS00515at 119.446 kb on - strand, within RS_RS00515at 119.446 kb on - strand, within RS_RS00515at 119.446 kb on - strand, within RS_RS00515at 119.446 kb on - strand, within RS_RS00515at 119.449 kb on - strand, within RS_RS00515at 119.449 kb on - strand, within RS_RS00515at 119.511 kb on + strand, within RS_RS00515at 119.554 kb on + strand, within RS_RS00515at 119.555 kb on - strand, within RS_RS00515at 119.588 kb on - strand, within RS_RS00515at 119.588 kb on - strand, within RS_RS00515at 119.719 kb on + strand, within RS_RS00515at 119.719 kb on + strand, within RS_RS00515at 119.719 kb on + strand, within RS_RS00515at 119.720 kb on - strand, within RS_RS00515at 119.720 kb on - strand, within RS_RS00515at 119.851 kb on + strand, within RS_RS00515at 120.021 kb on + strand, within RS_RS00515at 120.021 kb on + strand, within RS_RS00515at 120.022 kb on - strand, within RS_RS00515at 120.022 kb on - strand, within RS_RS00515at 120.144 kb on + strand, within RS_RS00515at 120.144 kb on + strand, within RS_RS00515at 120.145 kb on - strand, within RS_RS00515at 120.145 kb on - strand, within RS_RS00515at 120.195 kb on + strand, within RS_RS00515at 120.207 kb on - strand, within RS_RS00515at 120.207 kb on - strand, within RS_RS00515at 120.207 kb on - strand, within RS_RS00515at 120.218 kb on + strand, within RS_RS00515at 120.218 kb on + strand, within RS_RS00515at 120.255 kb on + strand, within RS_RS00515at 120.255 kb on + strand, within RS_RS00515at 120.255 kb on + strand, within RS_RS00515at 120.255 kb on + strand, within RS_RS00515at 120.255 kb on + strand, within RS_RS00515at 120.256 kb on - strand, within RS_RS00515at 120.256 kb on - strand, within RS_RS00515at 120.256 kb on - strand, within RS_RS00515at 120.291 kb on + strand, within RS_RS00515at 120.315 kb on + strand, within RS_RS00515at 120.315 kb on + strand, within RS_RS00515at 120.315 kb on + strand, within RS_RS00515at 120.315 kb on + strand, within RS_RS00515at 120.316 kb on - strand, within RS_RS00515at 120.316 kb on - strand, within RS_RS00515at 120.316 kb on - strand, within RS_RS00515at 120.316 kb on - strand, within RS_RS00515at 120.316 kb on - strand, within RS_RS00515at 120.316 kb on - strand, within RS_RS00515at 120.356 kb on + strand, within RS_RS00515at 120.357 kb on - strand, within RS_RS00515at 120.357 kb on - strand, within RS_RS00515at 120.409 kb on + strand, within RS_RS00515at 120.410 kb on - strand, within RS_RS00515at 120.411 kb on + strand, within RS_RS00515at 120.412 kb on - strand, within RS_RS00515at 120.412 kb on - strand, within RS_RS00515at 120.412 kb on - strand, within RS_RS00515at 120.412 kb on - strand, within RS_RS00515at 120.412 kb on - strand, within RS_RS00515at 120.412 kb on - strand, within RS_RS00515at 120.412 kb on - strand, within RS_RS00515at 120.576 kb on - strand, within RS_RS00515at 120.609 kb on + strand, within RS_RS00515at 120.610 kb on - strand, within RS_RS00515at 120.633 kb on + strand, within RS_RS00515at 120.633 kb on + strand, within RS_RS00515at 120.634 kb on - strand, within RS_RS00515at 120.639 kb on + strand, within RS_RS00515at 120.639 kb on + strand, within RS_RS00515at 120.639 kb on + strand, within RS_RS00515at 120.639 kb on + strand, within RS_RS00515at 120.640 kb on - strand, within RS_RS00515at 120.660 kb on + strand, within RS_RS00515at 120.661 kb on - strand, within RS_RS00515at 120.661 kb on - strand, within RS_RS00515at 120.765 kb on + strand, within RS_RS00515at 120.765 kb on + strand, within RS_RS00515at 120.765 kb on + strand, within RS_RS00515at 120.901 kb on - strand, within RS_RS00515at 120.901 kb on - strand, within RS_RS00515at 120.901 kb on - strand, within RS_RS00515at 120.901 kb on - strand, within RS_RS00515at 120.901 kb on - strand, within RS_RS00515at 121.623 kb on + strand, within RS_RS00515at 121.624 kb on - strand, within RS_RS00515at 121.624 kb on - strand, within RS_RS00515at 121.749 kb on - strandat 121.896 kb on + strandat 121.897 kb on - strandat 121.995 kb on + strandat 122.127 kb on - strandat 122.135 kb on + strandat 122.135 kb on + strandat 122.260 kb on + strand, within RS_RS25235at 122.261 kb on - strand, within RS_RS25235at 122.332 kb on + strand, within RS_RS25235at 122.337 kb on - strand, within RS_RS25235at 122.492 kb on + strand, within RS_RS25235at 122.519 kb on + strand, within RS_RS25235at 122.675 kb on + strand, within RS_RS25235at 122.746 kb on + strand, within RS_RS25235at 122.747 kb on - strand, within RS_RS25235at 122.780 kb on + strand, within RS_RS25235at 122.855 kb on + strand, within RS_RS25235at 122.855 kb on + strand, within RS_RS25235at 122.856 kb on - strand, within RS_RS25235

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
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119,228 - -0.0
119,275 + +0.3
119,275 + +0.4
119,276 - -0.5
119,276 - -0.5
119,276 - -0.9
119,276 - +0.0
119,276 - +0.7
119,276 - +0.5
119,276 - +0.3
119,276 - -0.1
119,432 + RS_RS00515 0.12 +0.2
119,446 - RS_RS00515 0.13 -0.2
119,446 - RS_RS00515 0.13 +0.5
119,446 - RS_RS00515 0.13 +0.2
119,446 - RS_RS00515 0.13 -0.5
119,449 - RS_RS00515 0.13 -0.1
119,449 - RS_RS00515 0.13 -0.3
119,511 + RS_RS00515 0.15 +0.1
119,554 + RS_RS00515 0.17 +1.7
119,555 - RS_RS00515 0.17 +0.1
119,588 - RS_RS00515 0.18 -0.7
119,588 - RS_RS00515 0.18 -0.5
119,719 + RS_RS00515 0.23 +0.5
119,719 + RS_RS00515 0.23 +0.6
119,719 + RS_RS00515 0.23 +0.0
119,720 - RS_RS00515 0.23 +0.3
119,720 - RS_RS00515 0.23 +0.3
119,851 + RS_RS00515 0.27 -0.5
120,021 + RS_RS00515 0.33 -0.7
120,021 + RS_RS00515 0.33 +0.3
120,022 - RS_RS00515 0.33 +0.1
120,022 - RS_RS00515 0.33 -0.5
120,144 + RS_RS00515 0.38 +0.1
120,144 + RS_RS00515 0.38 +0.3
120,145 - RS_RS00515 0.38 -0.2
120,145 - RS_RS00515 0.38 -0.4
120,195 + RS_RS00515 0.39 +0.3
120,207 - RS_RS00515 0.40 -0.4
120,207 - RS_RS00515 0.40 -0.3
120,207 - RS_RS00515 0.40 -0.2
120,218 + RS_RS00515 0.40 +0.7
120,218 + RS_RS00515 0.40 -0.4
120,255 + RS_RS00515 0.41 +0.2
120,255 + RS_RS00515 0.41 -0.3
120,255 + RS_RS00515 0.41 -0.0
120,255 + RS_RS00515 0.41 -0.3
120,255 + RS_RS00515 0.41 -0.4
120,256 - RS_RS00515 0.42 +0.6
120,256 - RS_RS00515 0.42 +0.2
120,256 - RS_RS00515 0.42 -0.4
120,291 + RS_RS00515 0.43 +0.6
120,315 + RS_RS00515 0.44 -0.4
120,315 + RS_RS00515 0.44 +0.0
120,315 + RS_RS00515 0.44 +0.4
120,315 + RS_RS00515 0.44 +0.3
120,316 - RS_RS00515 0.44 -0.6
120,316 - RS_RS00515 0.44 +0.4
120,316 - RS_RS00515 0.44 -0.1
120,316 - RS_RS00515 0.44 -0.1
120,316 - RS_RS00515 0.44 -0.4
120,316 - RS_RS00515 0.44 -0.3
120,356 + RS_RS00515 0.45 +0.5
120,357 - RS_RS00515 0.45 -0.6
120,357 - RS_RS00515 0.45 -0.2
120,409 + RS_RS00515 0.47 -0.1
120,410 - RS_RS00515 0.47 -0.6
120,411 + RS_RS00515 0.47 -0.6
120,412 - RS_RS00515 0.47 +0.2
120,412 - RS_RS00515 0.47 -0.7
120,412 - RS_RS00515 0.47 -0.5
120,412 - RS_RS00515 0.47 +0.8
120,412 - RS_RS00515 0.47 -0.1
120,412 - RS_RS00515 0.47 -0.5
120,412 - RS_RS00515 0.47 -0.1
120,576 - RS_RS00515 0.53 -0.1
120,609 + RS_RS00515 0.54 +0.1
120,610 - RS_RS00515 0.54 -0.4
120,633 + RS_RS00515 0.55 -0.4
120,633 + RS_RS00515 0.55 +0.0
120,634 - RS_RS00515 0.55 -0.4
120,639 + RS_RS00515 0.55 -1.1
120,639 + RS_RS00515 0.55 -0.8
120,639 + RS_RS00515 0.55 +0.7
120,639 + RS_RS00515 0.55 -0.0
120,640 - RS_RS00515 0.55 +0.6
120,660 + RS_RS00515 0.56 +0.1
120,661 - RS_RS00515 0.56 +0.1
120,661 - RS_RS00515 0.56 +0.2
120,765 + RS_RS00515 0.60 -0.1
120,765 + RS_RS00515 0.60 +0.3
120,765 + RS_RS00515 0.60 +0.4
120,901 - RS_RS00515 0.64 -0.5
120,901 - RS_RS00515 0.64 +0.5
120,901 - RS_RS00515 0.64 -0.1
120,901 - RS_RS00515 0.64 -0.3
120,901 - RS_RS00515 0.64 -0.2
121,623 + RS_RS00515 0.90 -0.3
121,624 - RS_RS00515 0.90 +0.4
121,624 - RS_RS00515 0.90 -0.0
121,749 - +0.7
121,896 + +0.9
121,897 - -0.1
121,995 + -0.3
122,127 - -0.4
122,135 + -0.2
122,135 + -0.5
122,260 + RS_RS25235 0.11 +2.2
122,261 - RS_RS25235 0.11 +1.0
122,332 + RS_RS25235 0.20 +0.1
122,337 - RS_RS25235 0.21 -0.3
122,492 + RS_RS25235 0.40 -0.4
122,519 + RS_RS25235 0.44 +0.5
122,675 + RS_RS25235 0.64 +0.2
122,746 + RS_RS25235 0.73 +0.2
122,747 - RS_RS25235 0.73 +0.9
122,780 + RS_RS25235 0.77 -0.0
122,855 + RS_RS25235 0.87 +0.0
122,855 + RS_RS25235 0.87 -0.1
122,856 - RS_RS25235 0.87 -0.3

Or see this region's nucleotide sequence