Experiment: D-Xylose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_507 and Pf6N2E2_508 overlap by 8 nucleotides Pf6N2E2_508 and Pf6N2E2_509 are separated by 281 nucleotides Pf6N2E2_509 and Pf6N2E2_510 are separated by 30 nucleotides
Pf6N2E2_507 - Hydrogen cyanide synthase HcnB / Opine oxidase subunit A, at 575,339 to 576,748
_507
Pf6N2E2_508 - Hydrogen cyanide synthase HcnC / Opine oxidase subunit B, at 576,741 to 578,003
_508
Pf6N2E2_509 - Glutathione S-transferase, unnamed subgroup 2 (EC 2.5.1.18), at 578,285 to 578,890
_509
Pf6N2E2_510 - Predicted transcriptional regulator of the myo-inositol catabolic operon, at 578,921 to 579,844
_510
Position (kb) 576
577
578
579 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 575.876 kb on + strand, within Pf6N2E2_507 at 575.876 kb on + strand, within Pf6N2E2_507 at 575.876 kb on + strand, within Pf6N2E2_507 at 575.876 kb on + strand, within Pf6N2E2_507 at 575.876 kb on + strand, within Pf6N2E2_507 at 575.877 kb on - strand, within Pf6N2E2_507 at 575.877 kb on - strand, within Pf6N2E2_507 at 575.877 kb on - strand, within Pf6N2E2_507 at 575.877 kb on - strand, within Pf6N2E2_507 at 575.877 kb on - strand, within Pf6N2E2_507 at 575.877 kb on - strand, within Pf6N2E2_507 at 575.877 kb on - strand, within Pf6N2E2_507 at 576.000 kb on - strand, within Pf6N2E2_507 at 576.201 kb on - strand, within Pf6N2E2_507 at 576.384 kb on - strand, within Pf6N2E2_507 at 576.746 kb on + strand at 576.746 kb on + strand at 576.747 kb on - strand at 576.747 kb on - strand at 576.747 kb on - strand at 576.747 kb on - strand at 576.753 kb on + strand at 576.754 kb on - strand at 576.801 kb on + strand at 576.802 kb on - strand at 577.011 kb on - strand, within Pf6N2E2_508 at 577.060 kb on - strand, within Pf6N2E2_508 at 577.060 kb on - strand, within Pf6N2E2_508 at 577.060 kb on - strand, within Pf6N2E2_508 at 577.161 kb on + strand, within Pf6N2E2_508 at 577.162 kb on - strand, within Pf6N2E2_508 at 577.326 kb on + strand, within Pf6N2E2_508 at 577.327 kb on - strand, within Pf6N2E2_508 at 577.327 kb on - strand, within Pf6N2E2_508 at 577.327 kb on - strand, within Pf6N2E2_508 at 577.327 kb on - strand, within Pf6N2E2_508 at 577.602 kb on + strand, within Pf6N2E2_508 at 577.603 kb on - strand, within Pf6N2E2_508 at 577.603 kb on - strand, within Pf6N2E2_508 at 577.603 kb on - strand, within Pf6N2E2_508 at 577.603 kb on - strand, within Pf6N2E2_508 at 577.715 kb on - strand, within Pf6N2E2_508 at 577.721 kb on + strand, within Pf6N2E2_508 at 577.721 kb on + strand, within Pf6N2E2_508 at 577.820 kb on - strand, within Pf6N2E2_508 at 577.931 kb on + strand at 577.931 kb on + strand at 578.057 kb on + strand at 578.057 kb on + strand at 578.057 kb on + strand at 578.058 kb on - strand at 578.250 kb on - strand at 578.250 kb on - strand at 578.514 kb on - strand, within Pf6N2E2_509 at 578.562 kb on + strand, within Pf6N2E2_509 at 578.562 kb on + strand, within Pf6N2E2_509 at 578.563 kb on - strand, within Pf6N2E2_509 at 578.563 kb on - strand, within Pf6N2E2_509 at 578.563 kb on - strand, within Pf6N2E2_509 at 578.565 kb on + strand, within Pf6N2E2_509 at 578.566 kb on - strand, within Pf6N2E2_509 at 578.566 kb on - strand, within Pf6N2E2_509 at 578.685 kb on + strand, within Pf6N2E2_509 at 578.712 kb on - strand, within Pf6N2E2_509 at 578.855 kb on + strand at 578.855 kb on + strand at 578.855 kb on + strand at 578.855 kb on + strand at 578.855 kb on + strand at 578.855 kb on + strand at 578.855 kb on + strand at 578.856 kb on - strand at 578.856 kb on - strand at 578.856 kb on - strand at 578.856 kb on - strand at 578.856 kb on - strand at 578.859 kb on + strand at 578.859 kb on + strand at 578.859 kb on + strand at 578.859 kb on + strand at 578.860 kb on - strand at 578.860 kb on - strand at 578.905 kb on + strand at 578.905 kb on + strand at 578.905 kb on + strand at 578.906 kb on - strand at 578.906 kb on - strand at 578.977 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Xylose (C) remove 575,876 + Pf6N2E2_507 0.38 +1.8 575,876 + Pf6N2E2_507 0.38 +1.9 575,876 + Pf6N2E2_507 0.38 -0.0 575,876 + Pf6N2E2_507 0.38 +0.2 575,876 + Pf6N2E2_507 0.38 -0.3 575,877 - Pf6N2E2_507 0.38 +1.4 575,877 - Pf6N2E2_507 0.38 -0.9 575,877 - Pf6N2E2_507 0.38 +0.6 575,877 - Pf6N2E2_507 0.38 +0.1 575,877 - Pf6N2E2_507 0.38 +0.8 575,877 - Pf6N2E2_507 0.38 +0.4 575,877 - Pf6N2E2_507 0.38 +0.8 576,000 - Pf6N2E2_507 0.47 -0.4 576,201 - Pf6N2E2_507 0.61 +1.5 576,384 - Pf6N2E2_507 0.74 -0.6 576,746 + +1.2 576,746 + -0.9 576,747 - +0.4 576,747 - -0.6 576,747 - -0.6 576,747 - +0.9 576,753 + +0.8 576,754 - -1.1 576,801 + +0.8 576,802 - +1.4 577,011 - Pf6N2E2_508 0.21 -0.3 577,060 - Pf6N2E2_508 0.25 -0.1 577,060 - Pf6N2E2_508 0.25 -1.0 577,060 - Pf6N2E2_508 0.25 -2.8 577,161 + Pf6N2E2_508 0.33 -0.4 577,162 - Pf6N2E2_508 0.33 -0.4 577,326 + Pf6N2E2_508 0.46 -0.8 577,327 - Pf6N2E2_508 0.46 -2.6 577,327 - Pf6N2E2_508 0.46 -0.2 577,327 - Pf6N2E2_508 0.46 -0.3 577,327 - Pf6N2E2_508 0.46 +0.8 577,602 + Pf6N2E2_508 0.68 +0.5 577,603 - Pf6N2E2_508 0.68 -0.3 577,603 - Pf6N2E2_508 0.68 -0.7 577,603 - Pf6N2E2_508 0.68 +1.1 577,603 - Pf6N2E2_508 0.68 -1.1 577,715 - Pf6N2E2_508 0.77 -0.2 577,721 + Pf6N2E2_508 0.78 -0.2 577,721 + Pf6N2E2_508 0.78 -0.6 577,820 - Pf6N2E2_508 0.85 +0.2 577,931 + -1.5 577,931 + +0.2 578,057 + +0.5 578,057 + +0.0 578,057 + +0.4 578,058 - +0.3 578,250 - +0.3 578,250 - -0.6 578,514 - Pf6N2E2_509 0.38 -0.7 578,562 + Pf6N2E2_509 0.46 +1.1 578,562 + Pf6N2E2_509 0.46 +0.3 578,563 - Pf6N2E2_509 0.46 +0.6 578,563 - Pf6N2E2_509 0.46 +1.4 578,563 - Pf6N2E2_509 0.46 +0.0 578,565 + Pf6N2E2_509 0.46 +0.4 578,566 - Pf6N2E2_509 0.46 -0.2 578,566 - Pf6N2E2_509 0.46 -1.0 578,685 + Pf6N2E2_509 0.66 +0.8 578,712 - Pf6N2E2_509 0.70 -2.5 578,855 + +1.2 578,855 + -0.3 578,855 + -1.2 578,855 + +0.3 578,855 + +0.2 578,855 + -0.2 578,855 + +0.1 578,856 - +0.3 578,856 - -0.0 578,856 - +0.6 578,856 - +0.7 578,856 - +0.1 578,859 + +0.9 578,859 + +0.2 578,859 + +1.2 578,859 + -0.2 578,860 - -0.2 578,860 - +0.1 578,905 + +0.5 578,905 + +1.4 578,905 + +1.0 578,906 - +0.2 578,906 - -0.6 578,977 - +3.1
Or see this region's nucleotide sequence