Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4565

Experiment: D-Xylose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_4564 and Pf6N2E2_4565 are separated by 258 nucleotidesPf6N2E2_4565 and Pf6N2E2_4566 are separated by 246 nucleotides Pf6N2E2_4564 - Dihydroxy-acid dehydratase (EC 4.2.1.9), at 5,294,000 to 5,295,841 _4564 Pf6N2E2_4565 - Multidrug resistance transporter, Bcr/CflA family, at 5,296,100 to 5,297,305 _4565 Pf6N2E2_4566 - LSU m5C1962 methyltransferase RlmI, at 5,297,552 to 5,298,748 _4566 Position (kb) 5296 5297 5298Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 5295.108 kb on + strand, within Pf6N2E2_4564at 5295.108 kb on + strand, within Pf6N2E2_4564at 5295.109 kb on - strand, within Pf6N2E2_4564at 5295.111 kb on + strand, within Pf6N2E2_4564at 5295.112 kb on - strand, within Pf6N2E2_4564at 5295.298 kb on - strand, within Pf6N2E2_4564at 5295.525 kb on + strand, within Pf6N2E2_4564at 5295.525 kb on + strand, within Pf6N2E2_4564at 5295.526 kb on - strand, within Pf6N2E2_4564at 5295.526 kb on - strand, within Pf6N2E2_4564at 5295.526 kb on - strand, within Pf6N2E2_4564at 5295.526 kb on - strand, within Pf6N2E2_4564at 5295.567 kb on + strand, within Pf6N2E2_4564at 5295.567 kb on + strand, within Pf6N2E2_4564at 5295.567 kb on + strand, within Pf6N2E2_4564at 5295.568 kb on - strand, within Pf6N2E2_4564at 5295.568 kb on - strand, within Pf6N2E2_4564at 5295.831 kb on + strandat 5295.868 kb on - strandat 5295.868 kb on - strandat 5295.868 kb on - strandat 5295.979 kb on + strandat 5295.980 kb on - strandat 5296.020 kb on - strandat 5296.319 kb on - strand, within Pf6N2E2_4565at 5296.519 kb on + strand, within Pf6N2E2_4565at 5296.520 kb on - strand, within Pf6N2E2_4565at 5296.520 kb on - strand, within Pf6N2E2_4565at 5296.521 kb on + strand, within Pf6N2E2_4565at 5296.521 kb on + strand, within Pf6N2E2_4565at 5296.521 kb on + strand, within Pf6N2E2_4565at 5296.521 kb on + strand, within Pf6N2E2_4565at 5296.521 kb on + strand, within Pf6N2E2_4565at 5296.521 kb on + strand, within Pf6N2E2_4565at 5296.521 kb on + strand, within Pf6N2E2_4565at 5296.521 kb on + strand, within Pf6N2E2_4565at 5296.521 kb on + strand, within Pf6N2E2_4565at 5296.521 kb on + strand, within Pf6N2E2_4565at 5296.521 kb on + strand, within Pf6N2E2_4565at 5296.522 kb on - strand, within Pf6N2E2_4565at 5296.522 kb on - strand, within Pf6N2E2_4565at 5296.522 kb on - strand, within Pf6N2E2_4565at 5296.522 kb on - strand, within Pf6N2E2_4565at 5296.522 kb on - strand, within Pf6N2E2_4565at 5296.522 kb on - strand, within Pf6N2E2_4565at 5296.574 kb on + strand, within Pf6N2E2_4565at 5296.575 kb on - strand, within Pf6N2E2_4565at 5296.653 kb on + strand, within Pf6N2E2_4565at 5296.653 kb on + strand, within Pf6N2E2_4565at 5296.653 kb on + strand, within Pf6N2E2_4565at 5296.653 kb on + strand, within Pf6N2E2_4565at 5296.653 kb on + strand, within Pf6N2E2_4565at 5296.654 kb on - strand, within Pf6N2E2_4565at 5296.654 kb on - strand, within Pf6N2E2_4565at 5296.654 kb on - strand, within Pf6N2E2_4565at 5296.654 kb on - strand, within Pf6N2E2_4565at 5296.654 kb on - strand, within Pf6N2E2_4565at 5296.654 kb on - strand, within Pf6N2E2_4565at 5296.736 kb on - strand, within Pf6N2E2_4565at 5296.745 kb on + strand, within Pf6N2E2_4565at 5296.886 kb on + strand, within Pf6N2E2_4565at 5296.886 kb on + strand, within Pf6N2E2_4565at 5296.887 kb on - strand, within Pf6N2E2_4565at 5296.887 kb on - strand, within Pf6N2E2_4565at 5296.888 kb on + strand, within Pf6N2E2_4565at 5296.888 kb on + strand, within Pf6N2E2_4565at 5296.888 kb on + strand, within Pf6N2E2_4565at 5296.888 kb on + strand, within Pf6N2E2_4565at 5296.888 kb on + strand, within Pf6N2E2_4565at 5296.888 kb on + strand, within Pf6N2E2_4565at 5296.888 kb on + strand, within Pf6N2E2_4565at 5296.889 kb on - strand, within Pf6N2E2_4565at 5296.889 kb on - strand, within Pf6N2E2_4565at 5296.889 kb on - strand, within Pf6N2E2_4565at 5296.928 kb on + strand, within Pf6N2E2_4565at 5296.928 kb on + strand, within Pf6N2E2_4565at 5296.929 kb on - strand, within Pf6N2E2_4565at 5296.929 kb on - strand, within Pf6N2E2_4565at 5297.015 kb on + strand, within Pf6N2E2_4565at 5297.016 kb on - strand, within Pf6N2E2_4565at 5297.253 kb on - strandat 5297.323 kb on + strandat 5297.323 kb on + strandat 5297.323 kb on + strandat 5297.324 kb on - strandat 5297.346 kb on + strandat 5297.347 kb on - strandat 5297.383 kb on + strandat 5297.383 kb on + strandat 5297.383 kb on + strandat 5297.383 kb on + strandat 5297.384 kb on - strandat 5297.417 kb on + strandat 5297.417 kb on + strandat 5297.417 kb on + strandat 5297.418 kb on - strandat 5297.430 kb on + strandat 5297.430 kb on + strandat 5297.430 kb on + strandat 5297.430 kb on + strandat 5297.430 kb on + strandat 5297.430 kb on + strandat 5297.430 kb on + strandat 5297.430 kb on + strandat 5297.431 kb on - strandat 5297.431 kb on - strandat 5297.431 kb on - strandat 5297.431 kb on - strandat 5297.431 kb on - strandat 5297.434 kb on + strandat 5297.435 kb on - strandat 5297.457 kb on + strandat 5297.457 kb on + strandat 5297.457 kb on + strandat 5297.593 kb on - strandat 5297.618 kb on + strandat 5298.060 kb on + strand, within Pf6N2E2_4566at 5298.060 kb on + strand, within Pf6N2E2_4566at 5298.061 kb on - strand, within Pf6N2E2_4566at 5298.061 kb on - strand, within Pf6N2E2_4566at 5298.061 kb on - strand, within Pf6N2E2_4566at 5298.132 kb on + strand, within Pf6N2E2_4566at 5298.133 kb on - strand, within Pf6N2E2_4566at 5298.133 kb on - strand, within Pf6N2E2_4566at 5298.237 kb on + strand, within Pf6N2E2_4566at 5298.237 kb on + strand, within Pf6N2E2_4566

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Xylose (C)
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5,295,108 + Pf6N2E2_4564 0.60 -2.8
5,295,108 + Pf6N2E2_4564 0.60 -4.3
5,295,109 - Pf6N2E2_4564 0.60 +0.2
5,295,111 + Pf6N2E2_4564 0.60 -0.0
5,295,112 - Pf6N2E2_4564 0.60 -3.0
5,295,298 - Pf6N2E2_4564 0.70 -3.5
5,295,525 + Pf6N2E2_4564 0.83 -4.0
5,295,525 + Pf6N2E2_4564 0.83 -2.6
5,295,526 - Pf6N2E2_4564 0.83 -3.1
5,295,526 - Pf6N2E2_4564 0.83 -1.0
5,295,526 - Pf6N2E2_4564 0.83 -3.3
5,295,526 - Pf6N2E2_4564 0.83 -3.6
5,295,567 + Pf6N2E2_4564 0.85 -3.4
5,295,567 + Pf6N2E2_4564 0.85 +0.2
5,295,567 + Pf6N2E2_4564 0.85 -2.5
5,295,568 - Pf6N2E2_4564 0.85 -3.8
5,295,568 - Pf6N2E2_4564 0.85 -4.1
5,295,831 + -4.3
5,295,868 - -1.0
5,295,868 - +0.0
5,295,868 - -0.7
5,295,979 + -1.1
5,295,980 - -0.4
5,296,020 - -0.4
5,296,319 - Pf6N2E2_4565 0.18 +0.8
5,296,519 + Pf6N2E2_4565 0.35 -0.7
5,296,520 - Pf6N2E2_4565 0.35 +0.6
5,296,520 - Pf6N2E2_4565 0.35 -0.1
5,296,521 + Pf6N2E2_4565 0.35 +0.9
5,296,521 + Pf6N2E2_4565 0.35 -0.8
5,296,521 + Pf6N2E2_4565 0.35 +0.4
5,296,521 + Pf6N2E2_4565 0.35 -0.3
5,296,521 + Pf6N2E2_4565 0.35 -0.2
5,296,521 + Pf6N2E2_4565 0.35 -1.6
5,296,521 + Pf6N2E2_4565 0.35 -0.7
5,296,521 + Pf6N2E2_4565 0.35 -0.4
5,296,521 + Pf6N2E2_4565 0.35 +1.2
5,296,521 + Pf6N2E2_4565 0.35 -0.4
5,296,521 + Pf6N2E2_4565 0.35 -1.2
5,296,522 - Pf6N2E2_4565 0.35 +1.0
5,296,522 - Pf6N2E2_4565 0.35 +0.1
5,296,522 - Pf6N2E2_4565 0.35 -0.0
5,296,522 - Pf6N2E2_4565 0.35 +0.6
5,296,522 - Pf6N2E2_4565 0.35 -0.1
5,296,522 - Pf6N2E2_4565 0.35 -1.2
5,296,574 + Pf6N2E2_4565 0.39 +1.2
5,296,575 - Pf6N2E2_4565 0.39 -0.3
5,296,653 + Pf6N2E2_4565 0.46 -0.3
5,296,653 + Pf6N2E2_4565 0.46 -0.3
5,296,653 + Pf6N2E2_4565 0.46 -0.0
5,296,653 + Pf6N2E2_4565 0.46 -2.0
5,296,653 + Pf6N2E2_4565 0.46 -0.5
5,296,654 - Pf6N2E2_4565 0.46 -1.3
5,296,654 - Pf6N2E2_4565 0.46 +0.4
5,296,654 - Pf6N2E2_4565 0.46 +0.7
5,296,654 - Pf6N2E2_4565 0.46 +0.8
5,296,654 - Pf6N2E2_4565 0.46 -1.5
5,296,654 - Pf6N2E2_4565 0.46 -0.9
5,296,736 - Pf6N2E2_4565 0.53 +0.7
5,296,745 + Pf6N2E2_4565 0.53 -1.2
5,296,886 + Pf6N2E2_4565 0.65 -0.3
5,296,886 + Pf6N2E2_4565 0.65 +0.0
5,296,887 - Pf6N2E2_4565 0.65 -0.3
5,296,887 - Pf6N2E2_4565 0.65 -0.5
5,296,888 + Pf6N2E2_4565 0.65 +1.2
5,296,888 + Pf6N2E2_4565 0.65 +0.4
5,296,888 + Pf6N2E2_4565 0.65 +0.8
5,296,888 + Pf6N2E2_4565 0.65 -1.0
5,296,888 + Pf6N2E2_4565 0.65 +0.8
5,296,888 + Pf6N2E2_4565 0.65 -0.4
5,296,888 + Pf6N2E2_4565 0.65 +1.0
5,296,889 - Pf6N2E2_4565 0.65 -0.0
5,296,889 - Pf6N2E2_4565 0.65 +0.2
5,296,889 - Pf6N2E2_4565 0.65 -2.1
5,296,928 + Pf6N2E2_4565 0.69 -0.1
5,296,928 + Pf6N2E2_4565 0.69 -0.9
5,296,929 - Pf6N2E2_4565 0.69 +0.9
5,296,929 - Pf6N2E2_4565 0.69 -0.8
5,297,015 + Pf6N2E2_4565 0.76 -0.2
5,297,016 - Pf6N2E2_4565 0.76 -0.1
5,297,253 - +0.4
5,297,323 + +0.6
5,297,323 + -1.3
5,297,323 + +0.5
5,297,324 - +0.7
5,297,346 + +0.6
5,297,347 - +1.1
5,297,383 + -0.1
5,297,383 + +0.5
5,297,383 + +1.4
5,297,383 + +0.4
5,297,384 - -1.6
5,297,417 + +0.2
5,297,417 + -0.3
5,297,417 + -0.6
5,297,418 - -0.0
5,297,430 + +0.2
5,297,430 + +0.2
5,297,430 + +0.1
5,297,430 + +0.7
5,297,430 + +0.6
5,297,430 + -0.5
5,297,430 + -0.2
5,297,430 + +1.4
5,297,431 - -0.1
5,297,431 - -0.3
5,297,431 - +1.4
5,297,431 - +0.0
5,297,431 - +0.8
5,297,434 + +0.2
5,297,435 - +0.3
5,297,457 + +0.1
5,297,457 + +0.7
5,297,457 + -0.2
5,297,593 - +1.0
5,297,618 + -0.6
5,298,060 + Pf6N2E2_4566 0.42 -0.1
5,298,060 + Pf6N2E2_4566 0.42 -0.6
5,298,061 - Pf6N2E2_4566 0.43 -0.3
5,298,061 - Pf6N2E2_4566 0.43 -0.8
5,298,061 - Pf6N2E2_4566 0.43 -0.4
5,298,132 + Pf6N2E2_4566 0.48 +0.3
5,298,133 - Pf6N2E2_4566 0.49 +0.6
5,298,133 - Pf6N2E2_4566 0.49 -0.6
5,298,237 + Pf6N2E2_4566 0.57 -0.3
5,298,237 + Pf6N2E2_4566 0.57 +0.2

Or see this region's nucleotide sequence