Experiment: D-Xylose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_345 and Pf6N2E2_346 are separated by 69 nucleotides Pf6N2E2_346 and Pf6N2E2_347 are separated by 120 nucleotides Pf6N2E2_347 and Pf6N2E2_348 are separated by 132 nucleotides
Pf6N2E2_345 - Manganese transport protein MntH, at 411,609 to 412,910
_345
Pf6N2E2_346 - 3-demethylubiquinone-9 3-methyltransferase, at 412,980 to 413,459
_346
Pf6N2E2_347 - Endoribonuclease L-PSP, at 413,580 to 413,981
_347
Pf6N2E2_348 - Transcriptional regulator, LysR family, at 414,114 to 415,043
_348
Position (kb) 413
414 Strain fitness (log2 ratio) -1
0
1 at 412.588 kb on + strand, within Pf6N2E2_345 at 412.815 kb on + strand at 412.945 kb on - strand at 412.989 kb on - strand at 413.010 kb on + strand at 413.219 kb on + strand, within Pf6N2E2_346 at 413.636 kb on - strand, within Pf6N2E2_347 at 413.637 kb on + strand, within Pf6N2E2_347 at 413.637 kb on + strand, within Pf6N2E2_347 at 413.637 kb on + strand, within Pf6N2E2_347 at 413.638 kb on - strand, within Pf6N2E2_347 at 413.638 kb on - strand, within Pf6N2E2_347 at 413.638 kb on - strand, within Pf6N2E2_347 at 413.638 kb on - strand, within Pf6N2E2_347 at 413.697 kb on + strand, within Pf6N2E2_347 at 413.935 kb on + strand, within Pf6N2E2_347 at 413.935 kb on + strand, within Pf6N2E2_347 at 413.935 kb on + strand, within Pf6N2E2_347 at 413.935 kb on + strand, within Pf6N2E2_347 at 413.935 kb on + strand, within Pf6N2E2_347 at 413.936 kb on - strand, within Pf6N2E2_347 at 413.936 kb on - strand, within Pf6N2E2_347 at 413.985 kb on + strand at 413.986 kb on - strand at 413.986 kb on - strand at 413.986 kb on - strand at 414.026 kb on + strand at 414.027 kb on - strand at 414.306 kb on + strand, within Pf6N2E2_348 at 414.306 kb on + strand, within Pf6N2E2_348 at 414.456 kb on + strand, within Pf6N2E2_348 at 414.457 kb on - strand, within Pf6N2E2_348 at 414.726 kb on + strand, within Pf6N2E2_348 at 414.727 kb on - strand, within Pf6N2E2_348 at 414.801 kb on + strand, within Pf6N2E2_348 at 414.849 kb on + strand, within Pf6N2E2_348 at 414.849 kb on + strand, within Pf6N2E2_348 at 414.849 kb on + strand, within Pf6N2E2_348 at 414.849 kb on + strand, within Pf6N2E2_348 at 414.849 kb on + strand, within Pf6N2E2_348 at 414.850 kb on - strand, within Pf6N2E2_348 at 414.850 kb on - strand, within Pf6N2E2_348 at 414.850 kb on - strand, within Pf6N2E2_348 at 414.850 kb on - strand, within Pf6N2E2_348 at 414.927 kb on + strand, within Pf6N2E2_348 at 414.927 kb on + strand, within Pf6N2E2_348
Per-strain Table
Position Strand Gene LocusTag Fraction D-Xylose (C) remove 412,588 + Pf6N2E2_345 0.75 +0.5 412,815 + -0.5 412,945 - -0.1 412,989 - -1.6 413,010 + +0.2 413,219 + Pf6N2E2_346 0.50 -0.1 413,636 - Pf6N2E2_347 0.14 -0.7 413,637 + Pf6N2E2_347 0.14 -0.6 413,637 + Pf6N2E2_347 0.14 +0.2 413,637 + Pf6N2E2_347 0.14 +0.2 413,638 - Pf6N2E2_347 0.14 -0.0 413,638 - Pf6N2E2_347 0.14 -0.1 413,638 - Pf6N2E2_347 0.14 -0.4 413,638 - Pf6N2E2_347 0.14 -0.2 413,697 + Pf6N2E2_347 0.29 -0.3 413,935 + Pf6N2E2_347 0.88 -0.3 413,935 + Pf6N2E2_347 0.88 -0.6 413,935 + Pf6N2E2_347 0.88 -0.6 413,935 + Pf6N2E2_347 0.88 -1.4 413,935 + Pf6N2E2_347 0.88 -1.1 413,936 - Pf6N2E2_347 0.89 +1.2 413,936 - Pf6N2E2_347 0.89 -0.5 413,985 + +1.1 413,986 - -0.9 413,986 - +0.9 413,986 - -0.1 414,026 + -1.4 414,027 - -0.6 414,306 + Pf6N2E2_348 0.21 +0.6 414,306 + Pf6N2E2_348 0.21 +0.4 414,456 + Pf6N2E2_348 0.37 +0.5 414,457 - Pf6N2E2_348 0.37 -0.5 414,726 + Pf6N2E2_348 0.66 +1.6 414,727 - Pf6N2E2_348 0.66 +0.8 414,801 + Pf6N2E2_348 0.74 -0.1 414,849 + Pf6N2E2_348 0.79 +1.3 414,849 + Pf6N2E2_348 0.79 +0.9 414,849 + Pf6N2E2_348 0.79 -0.4 414,849 + Pf6N2E2_348 0.79 +0.0 414,849 + Pf6N2E2_348 0.79 +1.5 414,850 - Pf6N2E2_348 0.79 +1.7 414,850 - Pf6N2E2_348 0.79 -0.2 414,850 - Pf6N2E2_348 0.79 -0.1 414,850 - Pf6N2E2_348 0.79 -0.6 414,927 + Pf6N2E2_348 0.87 +0.7 414,927 + Pf6N2E2_348 0.87 -0.1
Or see this region's nucleotide sequence