Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3353

Experiment: D-Xylose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_3351 and Pf6N2E2_3352 are separated by 4 nucleotidesPf6N2E2_3352 and Pf6N2E2_3353 are separated by 159 nucleotidesPf6N2E2_3353 and Pf6N2E2_3354 are separated by 27 nucleotides Pf6N2E2_3351 - tRNA pseudouridine synthase B (EC 4.2.1.70), at 3,879,770 to 3,880,687 _3351 Pf6N2E2_3352 - Ribosome-binding factor A, at 3,880,692 to 3,881,093 _3352 Pf6N2E2_3353 - Translation initiation factor 2, at 3,881,253 to 3,883,772 _3353 Pf6N2E2_3354 - Transcription termination protein NusA, at 3,883,800 to 3,885,281 _3354 Position (kb) 3881 3882 3883 3884Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3880.253 kb on + strand, within Pf6N2E2_3351at 3880.276 kb on + strand, within Pf6N2E2_3351at 3880.276 kb on + strand, within Pf6N2E2_3351at 3880.277 kb on - strand, within Pf6N2E2_3351at 3880.278 kb on + strand, within Pf6N2E2_3351at 3880.311 kb on + strand, within Pf6N2E2_3351

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Xylose (C)
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3,880,253 + Pf6N2E2_3351 0.53 -1.9
3,880,276 + Pf6N2E2_3351 0.55 -1.5
3,880,276 + Pf6N2E2_3351 0.55 +1.0
3,880,277 - Pf6N2E2_3351 0.55 +1.8
3,880,278 + Pf6N2E2_3351 0.55 +1.0
3,880,311 + Pf6N2E2_3351 0.59 -3.0

Or see this region's nucleotide sequence