Experiment: D-Xylose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_3148 and Pf6N2E2_3149 are separated by 5 nucleotides Pf6N2E2_3149 and Pf6N2E2_3150 are separated by 251 nucleotides Pf6N2E2_3150 and Pf6N2E2_3151 are separated by 206 nucleotides
Pf6N2E2_3148 - 16S rRNA processing protein RimM, at 3,640,825 to 3,641,361
_3148
Pf6N2E2_3149 - SSU ribosomal protein S16p, at 3,641,367 to 3,641,618
_3149
Pf6N2E2_3150 - Signal recognition particle, subunit Ffh SRP54 (TC 3.A.5.1.1), at 3,641,870 to 3,643,246
_3150
Pf6N2E2_3151 - Glutamate synthase [NADPH] small chain (EC 1.4.1.13), at 3,643,453 to 3,644,265
_3151
Position (kb)
3641
3642
3643
3644 Strain fitness (log2 ratio)
-1
0
1 at 3641.903 kb on - strand at 3641.903 kb on - strand at 3643.346 kb on - strand at 3643.365 kb on + strand at 3643.365 kb on + strand at 3643.366 kb on - strand at 3643.366 kb on - strand at 3643.366 kb on - strand at 3643.366 kb on - strand at 3643.412 kb on - strand at 3643.412 kb on - strand at 3643.452 kb on + strand at 3643.452 kb on + strand at 3643.452 kb on + strand at 3643.452 kb on + strand at 3643.452 kb on + strand at 3643.452 kb on + strand at 3643.452 kb on + strand at 3643.504 kb on + strand at 3643.505 kb on - strand at 3643.505 kb on - strand at 3643.522 kb on + strand at 3643.618 kb on + strand, within Pf6N2E2_3151 at 3643.618 kb on + strand, within Pf6N2E2_3151 at 3643.618 kb on + strand, within Pf6N2E2_3151 at 3643.620 kb on + strand, within Pf6N2E2_3151 at 3643.803 kb on + strand, within Pf6N2E2_3151 at 3643.804 kb on - strand, within Pf6N2E2_3151 at 3643.867 kb on + strand, within Pf6N2E2_3151 at 3644.222 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Xylose (C) remove 3,641,903 - -0.8 3,641,903 - -0.0 3,643,346 - +0.7 3,643,365 + -0.5 3,643,365 + +0.5 3,643,366 - +0.9 3,643,366 - +1.5 3,643,366 - -0.3 3,643,366 - +0.5 3,643,412 - -0.1 3,643,412 - +1.3 3,643,452 + +1.0 3,643,452 + +0.2 3,643,452 + +0.4 3,643,452 + +0.9 3,643,452 + +1.1 3,643,452 + +0.9 3,643,452 + +0.8 3,643,504 + +0.8 3,643,505 - +0.2 3,643,505 - +0.7 3,643,522 + +1.1 3,643,618 + Pf6N2E2_3151 0.20 +0.4 3,643,618 + Pf6N2E2_3151 0.20 +0.7 3,643,618 + Pf6N2E2_3151 0.20 +0.9 3,643,620 + Pf6N2E2_3151 0.21 +0.6 3,643,803 + Pf6N2E2_3151 0.43 -0.0 3,643,804 - Pf6N2E2_3151 0.43 +0.7 3,643,867 + Pf6N2E2_3151 0.51 -0.2 3,644,222 - +0.4
Or see this region's nucleotide sequence