Experiment: D-Xylose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_2509 and Pf6N2E2_2510 are separated by 485 nucleotides Pf6N2E2_2510 and Pf6N2E2_2511 are separated by 57 nucleotides Pf6N2E2_2511 and Pf6N2E2_2512 are separated by 92 nucleotides
Pf6N2E2_2509 - UDP-glucose 4-epimerase (EC 5.1.3.2), at 2,961,069 to 2,961,572
_2509
Pf6N2E2_2510 - Lipid carrier : UDP-N-acetylgalactosaminyltransferase (EC 2.4.1.-) / Alpha-1,3-N-acetylgalactosamine transferase PglA (EC 2.4.1.-); Putative glycosyltransferase, at 2,962,058 to 2,963,188
_2510
Pf6N2E2_2511 - hypothetical protein, at 2,963,246 to 2,963,362
_2511
Pf6N2E2_2512 - UDP-glucose 4-epimerase (EC 5.1.3.2), at 2,963,455 to 2,964,477
_2512
Position (kb)
2962
2963
2964 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2961.113 kb on + strand at 2961.114 kb on - strand at 2961.217 kb on - strand, within Pf6N2E2_2509 at 2961.342 kb on - strand, within Pf6N2E2_2509 at 2961.632 kb on - strand at 2961.873 kb on - strand at 2961.972 kb on - strand at 2962.002 kb on + strand at 2962.042 kb on - strand at 2962.256 kb on + strand, within Pf6N2E2_2510 at 2962.258 kb on + strand, within Pf6N2E2_2510 at 2962.262 kb on - strand, within Pf6N2E2_2510 at 2962.364 kb on + strand, within Pf6N2E2_2510 at 2962.365 kb on - strand, within Pf6N2E2_2510 at 2962.365 kb on - strand, within Pf6N2E2_2510 at 2962.370 kb on - strand, within Pf6N2E2_2510 at 2962.370 kb on - strand, within Pf6N2E2_2510 at 2962.386 kb on - strand, within Pf6N2E2_2510 at 2962.449 kb on - strand, within Pf6N2E2_2510 at 2962.449 kb on - strand, within Pf6N2E2_2510 at 2962.678 kb on + strand, within Pf6N2E2_2510 at 2962.678 kb on + strand, within Pf6N2E2_2510 at 2962.679 kb on - strand, within Pf6N2E2_2510 at 2962.778 kb on - strand, within Pf6N2E2_2510 at 2963.202 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Xylose (C) remove 2,961,113 + +0.5 2,961,114 - +0.8 2,961,217 - Pf6N2E2_2509 0.29 +1.5 2,961,342 - Pf6N2E2_2509 0.54 -1.9 2,961,632 - -1.3 2,961,873 - -0.7 2,961,972 - -1.4 2,962,002 + -1.5 2,962,042 - +1.2 2,962,256 + Pf6N2E2_2510 0.18 -0.9 2,962,258 + Pf6N2E2_2510 0.18 -3.2 2,962,262 - Pf6N2E2_2510 0.18 +1.5 2,962,364 + Pf6N2E2_2510 0.27 -0.1 2,962,365 - Pf6N2E2_2510 0.27 +0.5 2,962,365 - Pf6N2E2_2510 0.27 -1.9 2,962,370 - Pf6N2E2_2510 0.28 -1.4 2,962,370 - Pf6N2E2_2510 0.28 +0.1 2,962,386 - Pf6N2E2_2510 0.29 -2.1 2,962,449 - Pf6N2E2_2510 0.35 -0.1 2,962,449 - Pf6N2E2_2510 0.35 -1.1 2,962,678 + Pf6N2E2_2510 0.55 -1.1 2,962,678 + Pf6N2E2_2510 0.55 -2.4 2,962,679 - Pf6N2E2_2510 0.55 -1.8 2,962,778 - Pf6N2E2_2510 0.64 -1.1 2,963,202 - +0.1
Or see this region's nucleotide sequence