Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_234

Experiment: D-Xylose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_232 and Pf6N2E2_233 are separated by 144 nucleotidesPf6N2E2_233 and Pf6N2E2_234 are separated by 229 nucleotidesPf6N2E2_234 and Pf6N2E2_235 are separated by 181 nucleotides Pf6N2E2_232 - Protein involved in meta-pathway of phenol degradation, at 295,139 to 296,131 _232 Pf6N2E2_233 - Transcriptional regulator, TetR family, at 296,276 to 296,896 _233 Pf6N2E2_234 - FIG00454312: hypothetical protein, at 297,126 to 297,500 _234 Pf6N2E2_235 - L-proline glycine betaine binding ABC transporter protein ProX (TC 3.A.1.12.1), at 297,682 to 298,422 _235 Position (kb) 297 298Strain fitness (log2 ratio) -2 -1 0 1 2at 296.190 kb on + strandat 296.190 kb on + strandat 296.191 kb on - strandat 296.376 kb on + strand, within Pf6N2E2_233at 296.376 kb on + strand, within Pf6N2E2_233at 296.377 kb on - strand, within Pf6N2E2_233at 296.377 kb on - strand, within Pf6N2E2_233at 296.649 kb on + strand, within Pf6N2E2_233at 296.649 kb on + strand, within Pf6N2E2_233at 296.650 kb on - strand, within Pf6N2E2_233at 296.650 kb on - strand, within Pf6N2E2_233at 296.691 kb on + strand, within Pf6N2E2_233at 296.691 kb on + strand, within Pf6N2E2_233at 296.691 kb on + strand, within Pf6N2E2_233at 296.691 kb on + strand, within Pf6N2E2_233at 296.691 kb on + strand, within Pf6N2E2_233at 296.692 kb on - strand, within Pf6N2E2_233at 296.692 kb on - strand, within Pf6N2E2_233at 296.692 kb on - strand, within Pf6N2E2_233at 296.733 kb on + strand, within Pf6N2E2_233at 296.733 kb on + strand, within Pf6N2E2_233at 296.733 kb on + strand, within Pf6N2E2_233at 296.733 kb on + strand, within Pf6N2E2_233at 296.733 kb on + strand, within Pf6N2E2_233at 296.733 kb on + strand, within Pf6N2E2_233at 296.734 kb on - strand, within Pf6N2E2_233at 296.734 kb on - strand, within Pf6N2E2_233at 296.734 kb on - strand, within Pf6N2E2_233at 296.734 kb on - strand, within Pf6N2E2_233at 296.738 kb on - strand, within Pf6N2E2_233at 296.792 kb on + strand, within Pf6N2E2_233at 296.792 kb on + strand, within Pf6N2E2_233at 296.793 kb on - strand, within Pf6N2E2_233at 296.793 kb on - strand, within Pf6N2E2_233at 296.793 kb on - strand, within Pf6N2E2_233at 296.793 kb on - strand, within Pf6N2E2_233at 296.793 kb on - strand, within Pf6N2E2_233at 296.793 kb on - strand, within Pf6N2E2_233at 296.793 kb on - strand, within Pf6N2E2_233at 296.806 kb on + strand, within Pf6N2E2_233at 296.833 kb on + strand, within Pf6N2E2_233at 296.833 kb on + strand, within Pf6N2E2_233at 296.834 kb on - strand, within Pf6N2E2_233at 296.926 kb on + strandat 296.926 kb on + strandat 296.927 kb on - strandat 296.927 kb on - strandat 297.081 kb on + strandat 297.081 kb on + strandat 297.081 kb on + strandat 297.081 kb on + strandat 297.114 kb on - strandat 297.114 kb on - strandat 297.114 kb on - strandat 297.135 kb on + strandat 297.254 kb on + strand, within Pf6N2E2_234at 297.342 kb on + strand, within Pf6N2E2_234at 297.342 kb on + strand, within Pf6N2E2_234at 297.342 kb on + strand, within Pf6N2E2_234at 297.342 kb on + strand, within Pf6N2E2_234at 297.464 kb on + strandat 297.499 kb on - strandat 297.663 kb on - strandat 297.812 kb on - strand, within Pf6N2E2_235at 297.820 kb on + strand, within Pf6N2E2_235at 297.820 kb on + strand, within Pf6N2E2_235at 297.820 kb on + strand, within Pf6N2E2_235at 297.821 kb on - strand, within Pf6N2E2_235at 297.821 kb on - strand, within Pf6N2E2_235at 297.821 kb on - strand, within Pf6N2E2_235at 297.821 kb on - strand, within Pf6N2E2_235at 297.821 kb on - strand, within Pf6N2E2_235at 297.821 kb on - strand, within Pf6N2E2_235at 297.853 kb on + strand, within Pf6N2E2_235at 297.854 kb on - strand, within Pf6N2E2_235at 297.991 kb on + strand, within Pf6N2E2_235at 297.991 kb on + strand, within Pf6N2E2_235at 297.991 kb on + strand, within Pf6N2E2_235at 297.991 kb on + strand, within Pf6N2E2_235at 298.023 kb on + strand, within Pf6N2E2_235at 298.024 kb on - strand, within Pf6N2E2_235at 298.024 kb on - strand, within Pf6N2E2_235at 298.348 kb on + strand, within Pf6N2E2_235at 298.351 kb on + strandat 298.351 kb on + strandat 298.351 kb on + strandat 298.351 kb on + strandat 298.352 kb on - strandat 298.440 kb on + strandat 298.441 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Xylose (C)
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296,190 + +0.5
296,190 + +0.2
296,191 - -0.1
296,376 + Pf6N2E2_233 0.16 +0.2
296,376 + Pf6N2E2_233 0.16 +0.5
296,377 - Pf6N2E2_233 0.16 -0.0
296,377 - Pf6N2E2_233 0.16 -0.8
296,649 + Pf6N2E2_233 0.60 +0.1
296,649 + Pf6N2E2_233 0.60 +0.0
296,650 - Pf6N2E2_233 0.60 -0.4
296,650 - Pf6N2E2_233 0.60 +0.1
296,691 + Pf6N2E2_233 0.67 -0.4
296,691 + Pf6N2E2_233 0.67 +0.1
296,691 + Pf6N2E2_233 0.67 -0.3
296,691 + Pf6N2E2_233 0.67 +0.5
296,691 + Pf6N2E2_233 0.67 -0.7
296,692 - Pf6N2E2_233 0.67 +0.3
296,692 - Pf6N2E2_233 0.67 -0.2
296,692 - Pf6N2E2_233 0.67 -0.2
296,733 + Pf6N2E2_233 0.74 +0.7
296,733 + Pf6N2E2_233 0.74 -0.2
296,733 + Pf6N2E2_233 0.74 +0.5
296,733 + Pf6N2E2_233 0.74 +0.9
296,733 + Pf6N2E2_233 0.74 +1.3
296,733 + Pf6N2E2_233 0.74 -0.6
296,734 - Pf6N2E2_233 0.74 -0.7
296,734 - Pf6N2E2_233 0.74 -0.0
296,734 - Pf6N2E2_233 0.74 +0.6
296,734 - Pf6N2E2_233 0.74 -0.7
296,738 - Pf6N2E2_233 0.74 +0.2
296,792 + Pf6N2E2_233 0.83 +0.7
296,792 + Pf6N2E2_233 0.83 -0.0
296,793 - Pf6N2E2_233 0.83 +0.9
296,793 - Pf6N2E2_233 0.83 -0.4
296,793 - Pf6N2E2_233 0.83 -0.1
296,793 - Pf6N2E2_233 0.83 +0.0
296,793 - Pf6N2E2_233 0.83 +0.2
296,793 - Pf6N2E2_233 0.83 +0.4
296,793 - Pf6N2E2_233 0.83 +0.5
296,806 + Pf6N2E2_233 0.85 +0.0
296,833 + Pf6N2E2_233 0.90 -0.2
296,833 + Pf6N2E2_233 0.90 -0.5
296,834 - Pf6N2E2_233 0.90 +0.3
296,926 + +0.5
296,926 + +0.2
296,927 - -0.5
296,927 - -0.5
297,081 + -0.3
297,081 + -0.0
297,081 + -1.1
297,081 + -0.8
297,114 - +1.9
297,114 - +0.4
297,114 - -1.3
297,135 + +1.6
297,254 + Pf6N2E2_234 0.34 +1.6
297,342 + Pf6N2E2_234 0.58 -0.8
297,342 + Pf6N2E2_234 0.58 -0.1
297,342 + Pf6N2E2_234 0.58 -1.8
297,342 + Pf6N2E2_234 0.58 -0.6
297,464 + +0.4
297,499 - +0.4
297,663 - -0.2
297,812 - Pf6N2E2_235 0.18 +0.3
297,820 + Pf6N2E2_235 0.19 +1.1
297,820 + Pf6N2E2_235 0.19 +0.8
297,820 + Pf6N2E2_235 0.19 +0.6
297,821 - Pf6N2E2_235 0.19 -2.5
297,821 - Pf6N2E2_235 0.19 -0.5
297,821 - Pf6N2E2_235 0.19 +0.0
297,821 - Pf6N2E2_235 0.19 -1.4
297,821 - Pf6N2E2_235 0.19 +0.7
297,821 - Pf6N2E2_235 0.19 -0.0
297,853 + Pf6N2E2_235 0.23 +0.7
297,854 - Pf6N2E2_235 0.23 +0.1
297,991 + Pf6N2E2_235 0.42 +0.1
297,991 + Pf6N2E2_235 0.42 +0.9
297,991 + Pf6N2E2_235 0.42 +0.0
297,991 + Pf6N2E2_235 0.42 -1.1
298,023 + Pf6N2E2_235 0.46 +0.1
298,024 - Pf6N2E2_235 0.46 -0.1
298,024 - Pf6N2E2_235 0.46 +0.0
298,348 + Pf6N2E2_235 0.90 +0.2
298,351 + -0.9
298,351 + -0.4
298,351 + +0.3
298,351 + +0.3
298,352 - -0.7
298,440 + +1.0
298,441 - +1.8

Or see this region's nucleotide sequence