Experiment: D-Xylose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_1593 and Pf6N2E2_1594 are separated by 85 nucleotides Pf6N2E2_1594 and Pf6N2E2_1595 are separated by 196 nucleotides Pf6N2E2_1595 and Pf6N2E2_1596 are separated by 37 nucleotides Pf6N2E2_1596 and Pf6N2E2_1597 overlap by 4 nucleotides
Pf6N2E2_1593 - hypothetical protein, at 1,866,569 to 1,867,039
_1593
Pf6N2E2_1594 - Tia invasion determinant-related protein precursor, at 1,867,125 to 1,867,823
_1594
Pf6N2E2_1595 - Periplasmic nitrate reductase component NapE, at 1,868,020 to 1,868,187
_1595
Pf6N2E2_1596 - Periplasmic nitrate reductase component NapD, at 1,868,225 to 1,868,485
_1596
Pf6N2E2_1597 - Periplasmic nitrate reductase precursor (EC 1.7.99.4), at 1,868,482 to 1,870,986
_1597
Position (kb) 1868
1869 Strain fitness (log2 ratio) -1
0
1 at 1867.093 kb on - strand at 1867.093 kb on - strand at 1867.093 kb on - strand at 1867.096 kb on + strand at 1867.097 kb on - strand at 1867.103 kb on - strand at 1867.122 kb on - strand at 1867.122 kb on - strand at 1867.133 kb on - strand at 1867.133 kb on - strand at 1867.150 kb on - strand at 1867.221 kb on + strand, within Pf6N2E2_1594 at 1867.221 kb on + strand, within Pf6N2E2_1594 at 1867.221 kb on + strand, within Pf6N2E2_1594 at 1867.222 kb on - strand, within Pf6N2E2_1594 at 1867.223 kb on + strand, within Pf6N2E2_1594 at 1867.224 kb on - strand, within Pf6N2E2_1594 at 1867.224 kb on - strand, within Pf6N2E2_1594 at 1867.303 kb on - strand, within Pf6N2E2_1594 at 1867.431 kb on + strand, within Pf6N2E2_1594 at 1867.500 kb on + strand, within Pf6N2E2_1594 at 1867.501 kb on - strand, within Pf6N2E2_1594 at 1867.545 kb on + strand, within Pf6N2E2_1594 at 1867.545 kb on + strand, within Pf6N2E2_1594 at 1867.545 kb on + strand, within Pf6N2E2_1594 at 1867.545 kb on + strand, within Pf6N2E2_1594 at 1867.545 kb on + strand, within Pf6N2E2_1594 at 1867.545 kb on + strand, within Pf6N2E2_1594 at 1867.546 kb on - strand, within Pf6N2E2_1594 at 1867.546 kb on - strand, within Pf6N2E2_1594 at 1867.546 kb on - strand, within Pf6N2E2_1594 at 1867.711 kb on - strand, within Pf6N2E2_1594 at 1867.779 kb on + strand at 1867.812 kb on + strand at 1867.821 kb on + strand at 1867.821 kb on + strand at 1867.821 kb on + strand at 1867.821 kb on + strand at 1867.821 kb on + strand at 1867.952 kb on + strand at 1867.953 kb on - strand at 1867.991 kb on - strand at 1868.162 kb on - strand, within Pf6N2E2_1595 at 1868.162 kb on - strand, within Pf6N2E2_1595 at 1868.211 kb on - strand at 1868.243 kb on - strand at 1868.243 kb on - strand at 1868.243 kb on - strand at 1868.259 kb on + strand, within Pf6N2E2_1596 at 1868.260 kb on - strand, within Pf6N2E2_1596 at 1868.761 kb on + strand, within Pf6N2E2_1597 at 1868.761 kb on + strand, within Pf6N2E2_1597 at 1868.761 kb on + strand, within Pf6N2E2_1597 at 1868.761 kb on + strand, within Pf6N2E2_1597 at 1868.762 kb on - strand, within Pf6N2E2_1597 at 1868.762 kb on - strand, within Pf6N2E2_1597 at 1869.116 kb on + strand, within Pf6N2E2_1597 at 1869.117 kb on - strand, within Pf6N2E2_1597
Per-strain Table
Position Strand Gene LocusTag Fraction D-Xylose (C) remove 1,867,093 - +0.9 1,867,093 - -0.6 1,867,093 - +0.0 1,867,096 + -0.6 1,867,097 - -1.6 1,867,103 - +1.2 1,867,122 - -1.0 1,867,122 - -1.2 1,867,133 - +0.2 1,867,133 - +0.3 1,867,150 - -0.9 1,867,221 + Pf6N2E2_1594 0.14 -0.1 1,867,221 + Pf6N2E2_1594 0.14 -0.2 1,867,221 + Pf6N2E2_1594 0.14 +1.1 1,867,222 - Pf6N2E2_1594 0.14 +0.9 1,867,223 + Pf6N2E2_1594 0.14 -1.2 1,867,224 - Pf6N2E2_1594 0.14 -0.4 1,867,224 - Pf6N2E2_1594 0.14 -1.2 1,867,303 - Pf6N2E2_1594 0.25 +0.4 1,867,431 + Pf6N2E2_1594 0.44 -0.7 1,867,500 + Pf6N2E2_1594 0.54 +0.2 1,867,501 - Pf6N2E2_1594 0.54 -0.2 1,867,545 + Pf6N2E2_1594 0.60 -1.2 1,867,545 + Pf6N2E2_1594 0.60 +0.6 1,867,545 + Pf6N2E2_1594 0.60 +0.5 1,867,545 + Pf6N2E2_1594 0.60 +0.4 1,867,545 + Pf6N2E2_1594 0.60 +0.4 1,867,545 + Pf6N2E2_1594 0.60 +0.3 1,867,546 - Pf6N2E2_1594 0.60 -0.8 1,867,546 - Pf6N2E2_1594 0.60 +1.2 1,867,546 - Pf6N2E2_1594 0.60 -0.4 1,867,711 - Pf6N2E2_1594 0.84 +0.4 1,867,779 + +0.3 1,867,812 + +0.4 1,867,821 + -0.1 1,867,821 + -0.2 1,867,821 + -0.1 1,867,821 + -0.0 1,867,821 + -1.1 1,867,952 + +1.7 1,867,953 - -0.6 1,867,991 - +0.6 1,868,162 - Pf6N2E2_1595 0.85 +0.6 1,868,162 - Pf6N2E2_1595 0.85 -1.6 1,868,211 - +1.0 1,868,243 - +0.9 1,868,243 - -0.6 1,868,243 - +0.5 1,868,259 + Pf6N2E2_1596 0.13 -0.2 1,868,260 - Pf6N2E2_1596 0.13 +0.8 1,868,761 + Pf6N2E2_1597 0.11 -1.0 1,868,761 + Pf6N2E2_1597 0.11 +0.8 1,868,761 + Pf6N2E2_1597 0.11 +0.9 1,868,761 + Pf6N2E2_1597 0.11 -1.7 1,868,762 - Pf6N2E2_1597 0.11 +0.1 1,868,762 - Pf6N2E2_1597 0.11 +0.2 1,869,116 + Pf6N2E2_1597 0.25 +1.6 1,869,117 - Pf6N2E2_1597 0.25 +0.3
Or see this region's nucleotide sequence