Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03517

Experiment: N-Acetyl-D-glucosamine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_03516 and CCNA_03517 are separated by 107 nucleotidesCCNA_03517 and CCNA_03518 are separated by 26 nucleotides CCNA_03516: CCNA_03516 - protoheme IX farnesyltransferase coxE, at 3,672,702 to 3,673,721 _03516 CCNA_03517: CCNA_03517 - cytochrome c oxidase polypeptide I coxA, at 3,673,829 to 3,675,487 _03517 CCNA_03518: CCNA_03518 - cytochrome c oxidase polypeptide II coxB, at 3,675,514 to 3,676,443 _03518 Position (kb) 3673 3674 3675 3676Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 3672.849 kb on - strand, within CCNA_03516at 3672.977 kb on - strand, within CCNA_03516at 3673.018 kb on - strand, within CCNA_03516at 3673.126 kb on - strand, within CCNA_03516at 3673.128 kb on - strand, within CCNA_03516at 3673.190 kb on - strand, within CCNA_03516at 3673.491 kb on - strand, within CCNA_03516at 3673.514 kb on + strand, within CCNA_03516at 3673.719 kb on - strandat 3673.744 kb on + strandat 3673.747 kb on - strandat 3673.757 kb on - strandat 3673.762 kb on + strandat 3673.777 kb on - strandat 3673.827 kb on + strandat 3673.835 kb on - strandat 3673.835 kb on - strandat 3673.871 kb on - strandat 3673.907 kb on - strandat 3673.940 kb on - strandat 3673.973 kb on - strandat 3673.973 kb on - strandat 3673.988 kb on - strandat 3674.044 kb on + strand, within CCNA_03517at 3674.044 kb on - strand, within CCNA_03517at 3674.052 kb on - strand, within CCNA_03517at 3674.150 kb on - strand, within CCNA_03517at 3674.157 kb on + strand, within CCNA_03517at 3674.165 kb on - strand, within CCNA_03517at 3674.261 kb on - strand, within CCNA_03517at 3674.261 kb on - strand, within CCNA_03517at 3674.282 kb on - strand, within CCNA_03517at 3674.288 kb on - strand, within CCNA_03517at 3674.300 kb on - strand, within CCNA_03517at 3674.380 kb on - strand, within CCNA_03517at 3674.391 kb on - strand, within CCNA_03517at 3674.391 kb on - strand, within CCNA_03517at 3674.459 kb on - strand, within CCNA_03517at 3674.516 kb on - strand, within CCNA_03517at 3674.521 kb on - strand, within CCNA_03517at 3674.521 kb on - strand, within CCNA_03517at 3674.570 kb on - strand, within CCNA_03517at 3674.676 kb on + strand, within CCNA_03517at 3674.962 kb on - strand, within CCNA_03517at 3674.968 kb on - strand, within CCNA_03517at 3674.987 kb on - strand, within CCNA_03517at 3674.989 kb on - strand, within CCNA_03517at 3675.254 kb on - strand, within CCNA_03517at 3675.371 kb on + strandat 3675.382 kb on - strandat 3675.408 kb on + strandat 3675.560 kb on - strandat 3675.567 kb on + strandat 3675.638 kb on + strand, within CCNA_03518at 3675.638 kb on + strand, within CCNA_03518at 3675.646 kb on - strand, within CCNA_03518at 3675.681 kb on - strand, within CCNA_03518at 3675.688 kb on - strand, within CCNA_03518at 3675.703 kb on + strand, within CCNA_03518at 3675.721 kb on - strand, within CCNA_03518at 3675.721 kb on - strand, within CCNA_03518at 3675.723 kb on + strand, within CCNA_03518at 3675.726 kb on - strand, within CCNA_03518at 3675.731 kb on - strand, within CCNA_03518at 3675.731 kb on - strand, within CCNA_03518at 3675.781 kb on - strand, within CCNA_03518at 3675.832 kb on + strand, within CCNA_03518at 3675.840 kb on - strand, within CCNA_03518at 3675.840 kb on - strand, within CCNA_03518at 3675.856 kb on + strand, within CCNA_03518at 3675.925 kb on - strand, within CCNA_03518at 3675.932 kb on + strand, within CCNA_03518at 3675.934 kb on - strand, within CCNA_03518at 3675.940 kb on - strand, within CCNA_03518at 3675.950 kb on - strand, within CCNA_03518at 3675.952 kb on - strand, within CCNA_03518at 3675.952 kb on - strand, within CCNA_03518at 3675.952 kb on - strand, within CCNA_03518at 3676.020 kb on - strand, within CCNA_03518at 3676.046 kb on - strand, within CCNA_03518at 3676.046 kb on - strand, within CCNA_03518at 3676.046 kb on - strand, within CCNA_03518at 3676.122 kb on - strand, within CCNA_03518at 3676.127 kb on - strand, within CCNA_03518at 3676.132 kb on - strand, within CCNA_03518at 3676.132 kb on - strand, within CCNA_03518at 3676.132 kb on - strand, within CCNA_03518at 3676.210 kb on - strand, within CCNA_03518at 3676.224 kb on - strand, within CCNA_03518at 3676.232 kb on - strand, within CCNA_03518at 3676.414 kb on - strandat 3676.448 kb on + strandat 3676.486 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction N-Acetyl-D-glucosamine (N)
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3,672,849 - CCNA_03516 0.14 -0.2
3,672,977 - CCNA_03516 0.27 +0.3
3,673,018 - CCNA_03516 0.31 +0.4
3,673,126 - CCNA_03516 0.42 +0.9
3,673,128 - CCNA_03516 0.42 +1.0
3,673,190 - CCNA_03516 0.48 +4.5
3,673,491 - CCNA_03516 0.77 -0.8
3,673,514 + CCNA_03516 0.80 +0.9
3,673,719 - -0.2
3,673,744 + -1.4
3,673,747 - +0.2
3,673,757 - +0.2
3,673,762 + +0.6
3,673,777 - -0.7
3,673,827 + -0.3
3,673,835 - -0.0
3,673,835 - -0.2
3,673,871 - +0.4
3,673,907 - +0.5
3,673,940 - +0.5
3,673,973 - +0.6
3,673,973 - +0.4
3,673,988 - -0.2
3,674,044 + CCNA_03517 0.13 -0.5
3,674,044 - CCNA_03517 0.13 -1.6
3,674,052 - CCNA_03517 0.13 -0.3
3,674,150 - CCNA_03517 0.19 -0.6
3,674,157 + CCNA_03517 0.20 +0.3
3,674,165 - CCNA_03517 0.20 -1.5
3,674,261 - CCNA_03517 0.26 -2.1
3,674,261 - CCNA_03517 0.26 -0.5
3,674,282 - CCNA_03517 0.27 -1.6
3,674,288 - CCNA_03517 0.28 -0.9
3,674,300 - CCNA_03517 0.28 +1.3
3,674,380 - CCNA_03517 0.33 +0.3
3,674,391 - CCNA_03517 0.34 +1.3
3,674,391 - CCNA_03517 0.34 -0.9
3,674,459 - CCNA_03517 0.38 -1.5
3,674,516 - CCNA_03517 0.41 -1.3
3,674,521 - CCNA_03517 0.42 -1.6
3,674,521 - CCNA_03517 0.42 -0.9
3,674,570 - CCNA_03517 0.45 -0.1
3,674,676 + CCNA_03517 0.51 -0.2
3,674,962 - CCNA_03517 0.68 -0.8
3,674,968 - CCNA_03517 0.69 -0.2
3,674,987 - CCNA_03517 0.70 +0.5
3,674,989 - CCNA_03517 0.70 -0.2
3,675,254 - CCNA_03517 0.86 -0.8
3,675,371 + +0.3
3,675,382 - +0.2
3,675,408 + +0.1
3,675,560 - -0.8
3,675,567 + +1.7
3,675,638 + CCNA_03518 0.13 +0.1
3,675,638 + CCNA_03518 0.13 +0.1
3,675,646 - CCNA_03518 0.14 +0.7
3,675,681 - CCNA_03518 0.18 +1.2
3,675,688 - CCNA_03518 0.19 -1.0
3,675,703 + CCNA_03518 0.20 -0.3
3,675,721 - CCNA_03518 0.22 -0.6
3,675,721 - CCNA_03518 0.22 -0.1
3,675,723 + CCNA_03518 0.22 +1.9
3,675,726 - CCNA_03518 0.23 -0.1
3,675,731 - CCNA_03518 0.23 +0.4
3,675,731 - CCNA_03518 0.23 -0.9
3,675,781 - CCNA_03518 0.29 -0.5
3,675,832 + CCNA_03518 0.34 +1.1
3,675,840 - CCNA_03518 0.35 -0.0
3,675,840 - CCNA_03518 0.35 +0.7
3,675,856 + CCNA_03518 0.37 +1.3
3,675,925 - CCNA_03518 0.44 -1.1
3,675,932 + CCNA_03518 0.45 +1.3
3,675,934 - CCNA_03518 0.45 -0.7
3,675,940 - CCNA_03518 0.46 -1.3
3,675,950 - CCNA_03518 0.47 +1.1
3,675,952 - CCNA_03518 0.47 +0.4
3,675,952 - CCNA_03518 0.47 +0.0
3,675,952 - CCNA_03518 0.47 -0.3
3,676,020 - CCNA_03518 0.54 -0.7
3,676,046 - CCNA_03518 0.57 +0.9
3,676,046 - CCNA_03518 0.57 -0.2
3,676,046 - CCNA_03518 0.57 +0.3
3,676,122 - CCNA_03518 0.65 -0.3
3,676,127 - CCNA_03518 0.66 +1.0
3,676,132 - CCNA_03518 0.66 -0.4
3,676,132 - CCNA_03518 0.66 -0.5
3,676,132 - CCNA_03518 0.66 +0.5
3,676,210 - CCNA_03518 0.75 +0.3
3,676,224 - CCNA_03518 0.76 -0.5
3,676,232 - CCNA_03518 0.77 -0.0
3,676,414 - -0.5
3,676,448 + +0.9
3,676,486 + +1.3

Or see this region's nucleotide sequence