Experiment: N-Acetyl-D-glucosamine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03165 and CCNA_03166 are separated by 72 nucleotides CCNA_03166 and CCNA_03167 are separated by 24 nucleotides
CCNA_03165: CCNA_03165 - major facilitator superfamily transporter, at 3,323,565 to 3,324,974
_03165
CCNA_03166: CCNA_03166 - ArsR-family transcriptional regulator, at 3,325,047 to 3,325,751
_03166
CCNA_03167: CCNA_03167 - hypothetical protein, at 3,325,776 to 3,326,630
_03167
Position (kb)
3325
3326 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3324.109 kb on - strand, within CCNA_03165 at 3324.109 kb on - strand, within CCNA_03165 at 3324.115 kb on - strand, within CCNA_03165 at 3324.129 kb on + strand, within CCNA_03165 at 3324.129 kb on + strand, within CCNA_03165 at 3324.129 kb on + strand, within CCNA_03165 at 3324.129 kb on + strand, within CCNA_03165 at 3324.129 kb on + strand, within CCNA_03165 at 3324.137 kb on - strand, within CCNA_03165 at 3324.137 kb on - strand, within CCNA_03165 at 3324.137 kb on - strand, within CCNA_03165 at 3324.137 kb on - strand, within CCNA_03165 at 3324.142 kb on - strand, within CCNA_03165 at 3324.298 kb on + strand, within CCNA_03165 at 3324.298 kb on + strand, within CCNA_03165 at 3324.298 kb on + strand, within CCNA_03165 at 3324.340 kb on + strand, within CCNA_03165 at 3324.340 kb on + strand, within CCNA_03165 at 3324.348 kb on - strand, within CCNA_03165 at 3324.384 kb on - strand, within CCNA_03165 at 3324.402 kb on + strand, within CCNA_03165 at 3324.407 kb on + strand, within CCNA_03165 at 3324.415 kb on - strand, within CCNA_03165 at 3324.489 kb on + strand, within CCNA_03165 at 3324.489 kb on + strand, within CCNA_03165 at 3324.508 kb on - strand, within CCNA_03165 at 3324.585 kb on + strand, within CCNA_03165 at 3324.593 kb on + strand, within CCNA_03165 at 3324.739 kb on - strand, within CCNA_03165 at 3324.806 kb on - strand at 3324.806 kb on - strand, within CCNA_03165 at 3324.816 kb on - strand, within CCNA_03165 at 3324.835 kb on + strand at 3324.938 kb on - strand at 3324.978 kb on + strand at 3324.985 kb on - strand at 3325.031 kb on + strand at 3325.031 kb on + strand at 3325.031 kb on + strand at 3325.031 kb on + strand at 3325.031 kb on + strand at 3325.031 kb on + strand at 3325.031 kb on + strand at 3325.039 kb on - strand at 3325.039 kb on - strand at 3325.039 kb on - strand at 3325.039 kb on - strand at 3325.043 kb on + strand at 3325.074 kb on + strand at 3325.106 kb on + strand at 3325.146 kb on + strand, within CCNA_03166 at 3325.146 kb on + strand, within CCNA_03166 at 3325.146 kb on + strand, within CCNA_03166 at 3325.146 kb on + strand, within CCNA_03166 at 3325.146 kb on + strand, within CCNA_03166 at 3325.154 kb on - strand, within CCNA_03166 at 3325.154 kb on - strand, within CCNA_03166 at 3325.154 kb on - strand, within CCNA_03166 at 3325.159 kb on - strand, within CCNA_03166 at 3325.204 kb on - strand, within CCNA_03166 at 3325.220 kb on + strand, within CCNA_03166 at 3325.262 kb on + strand, within CCNA_03166 at 3325.287 kb on + strand, within CCNA_03166 at 3325.344 kb on + strand, within CCNA_03166 at 3325.344 kb on + strand, within CCNA_03166 at 3325.344 kb on + strand, within CCNA_03166 at 3325.349 kb on + strand, within CCNA_03166 at 3325.351 kb on + strand, within CCNA_03166 at 3325.352 kb on - strand, within CCNA_03166 at 3325.412 kb on + strand, within CCNA_03166 at 3325.417 kb on + strand, within CCNA_03166 at 3325.490 kb on + strand, within CCNA_03166 at 3325.526 kb on - strand, within CCNA_03166 at 3325.527 kb on - strand, within CCNA_03166 at 3325.527 kb on - strand, within CCNA_03166 at 3325.531 kb on - strand, within CCNA_03166 at 3325.543 kb on + strand, within CCNA_03166 at 3325.543 kb on + strand, within CCNA_03166 at 3325.551 kb on - strand, within CCNA_03166 at 3325.551 kb on - strand, within CCNA_03166 at 3325.558 kb on + strand, within CCNA_03166 at 3325.561 kb on - strand, within CCNA_03166 at 3325.561 kb on - strand, within CCNA_03166 at 3325.570 kb on - strand, within CCNA_03166 at 3325.570 kb on - strand, within CCNA_03166 at 3325.587 kb on - strand, within CCNA_03166 at 3325.666 kb on + strand, within CCNA_03166 at 3325.687 kb on + strand at 3325.700 kb on + strand at 3325.714 kb on + strand at 3325.720 kb on + strand at 3325.721 kb on - strand at 3325.722 kb on - strand at 3325.722 kb on - strand at 3325.728 kb on - strand at 3325.746 kb on + strand at 3325.746 kb on + strand at 3325.754 kb on - strand at 3325.754 kb on - strand at 3325.754 kb on - strand at 3325.764 kb on - strand at 3325.776 kb on + strand at 3325.784 kb on - strand at 3325.809 kb on - strand at 3325.814 kb on + strand at 3325.814 kb on + strand at 3325.822 kb on - strand at 3325.822 kb on - strand at 3325.891 kb on + strand, within CCNA_03167 at 3325.899 kb on - strand, within CCNA_03167 at 3325.899 kb on - strand, within CCNA_03167 at 3325.899 kb on - strand, within CCNA_03167 at 3325.906 kb on + strand, within CCNA_03167 at 3325.908 kb on + strand, within CCNA_03167 at 3325.908 kb on + strand, within CCNA_03167 at 3325.914 kb on - strand, within CCNA_03167 at 3325.916 kb on - strand, within CCNA_03167 at 3325.926 kb on - strand, within CCNA_03167 at 3325.956 kb on - strand, within CCNA_03167 at 3325.973 kb on + strand, within CCNA_03167 at 3325.973 kb on + strand, within CCNA_03167 at 3325.981 kb on - strand, within CCNA_03167 at 3325.981 kb on - strand, within CCNA_03167 at 3325.994 kb on - strand, within CCNA_03167 at 3325.995 kb on + strand, within CCNA_03167 at 3326.077 kb on + strand, within CCNA_03167 at 3326.104 kb on + strand, within CCNA_03167 at 3326.109 kb on + strand, within CCNA_03167 at 3326.112 kb on - strand, within CCNA_03167 at 3326.117 kb on + strand, within CCNA_03167 at 3326.117 kb on + strand, within CCNA_03167 at 3326.243 kb on - strand, within CCNA_03167 at 3326.246 kb on + strand, within CCNA_03167 at 3326.246 kb on + strand, within CCNA_03167 at 3326.293 kb on + strand, within CCNA_03167 at 3326.301 kb on - strand, within CCNA_03167 at 3326.311 kb on - strand, within CCNA_03167 at 3326.326 kb on + strand, within CCNA_03167 at 3326.334 kb on - strand, within CCNA_03167 at 3326.352 kb on + strand, within CCNA_03167 at 3326.360 kb on - strand, within CCNA_03167 at 3326.368 kb on + strand, within CCNA_03167 at 3326.368 kb on + strand, within CCNA_03167 at 3326.383 kb on + strand, within CCNA_03167 at 3326.393 kb on + strand, within CCNA_03167 at 3326.393 kb on + strand, within CCNA_03167 at 3326.393 kb on + strand, within CCNA_03167 at 3326.431 kb on - strand, within CCNA_03167 at 3326.515 kb on + strand, within CCNA_03167 at 3326.518 kb on - strand, within CCNA_03167 at 3326.523 kb on - strand, within CCNA_03167 at 3326.523 kb on - strand, within CCNA_03167 at 3326.523 kb on - strand, within CCNA_03167 at 3326.555 kb on + strand at 3326.565 kb on + strand at 3326.573 kb on - strand at 3326.573 kb on - strand at 3326.611 kb on + strand at 3326.621 kb on + strand at 3326.638 kb on + strand at 3326.646 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction N-Acetyl-D-glucosamine (N) remove 3,324,109 - CCNA_03165 0.39 -1.0 3,324,109 - CCNA_03165 0.39 -0.0 3,324,115 - CCNA_03165 0.39 -1.0 3,324,129 + CCNA_03165 0.40 -2.1 3,324,129 + CCNA_03165 0.40 +1.0 3,324,129 + CCNA_03165 0.40 +0.9 3,324,129 + CCNA_03165 0.40 +0.9 3,324,129 + CCNA_03165 0.40 +1.1 3,324,137 - CCNA_03165 0.41 +0.5 3,324,137 - CCNA_03165 0.41 +2.0 3,324,137 - CCNA_03165 0.41 -0.0 3,324,137 - CCNA_03165 0.41 +0.4 3,324,142 - CCNA_03165 0.41 -0.1 3,324,298 + CCNA_03165 0.52 +1.4 3,324,298 + CCNA_03165 0.52 -0.0 3,324,298 + CCNA_03165 0.52 -0.2 3,324,340 + CCNA_03165 0.55 -0.5 3,324,340 + CCNA_03165 0.55 -0.2 3,324,348 - CCNA_03165 0.56 -0.8 3,324,384 - CCNA_03165 0.58 -0.2 3,324,402 + CCNA_03165 0.59 -1.6 3,324,407 + CCNA_03165 0.60 +0.4 3,324,415 - CCNA_03165 0.60 +0.3 3,324,489 + CCNA_03165 0.66 -1.1 3,324,489 + CCNA_03165 0.66 -0.4 3,324,508 - CCNA_03165 0.67 +0.8 3,324,585 + CCNA_03165 0.72 -0.3 3,324,593 + CCNA_03165 0.73 -0.1 3,324,739 - CCNA_03165 0.83 -0.3 3,324,806 - +0.7 3,324,806 - CCNA_03165 0.88 +0.8 3,324,816 - CCNA_03165 0.89 +1.0 3,324,835 + -0.8 3,324,938 - +0.7 3,324,978 + +2.0 3,324,985 - -2.4 3,325,031 + -1.4 3,325,031 + +0.4 3,325,031 + +1.2 3,325,031 + -0.1 3,325,031 + +0.2 3,325,031 + +2.4 3,325,031 + -0.6 3,325,039 - +1.4 3,325,039 - -1.2 3,325,039 - -0.8 3,325,039 - +0.1 3,325,043 + +1.8 3,325,074 + +3.0 3,325,106 + -0.3 3,325,146 + CCNA_03166 0.14 +0.4 3,325,146 + CCNA_03166 0.14 -0.2 3,325,146 + CCNA_03166 0.14 +1.8 3,325,146 + CCNA_03166 0.14 +1.4 3,325,146 + CCNA_03166 0.14 +1.5 3,325,154 - CCNA_03166 0.15 +2.8 3,325,154 - CCNA_03166 0.15 +1.2 3,325,154 - CCNA_03166 0.15 +0.7 3,325,159 - CCNA_03166 0.16 +0.3 3,325,204 - CCNA_03166 0.22 +1.5 3,325,220 + CCNA_03166 0.25 -0.5 3,325,262 + CCNA_03166 0.30 -0.1 3,325,287 + CCNA_03166 0.34 -1.1 3,325,344 + CCNA_03166 0.42 +1.1 3,325,344 + CCNA_03166 0.42 -1.0 3,325,344 + CCNA_03166 0.42 +1.9 3,325,349 + CCNA_03166 0.43 -0.2 3,325,351 + CCNA_03166 0.43 -0.3 3,325,352 - CCNA_03166 0.43 +0.9 3,325,412 + CCNA_03166 0.52 -0.6 3,325,417 + CCNA_03166 0.52 -2.0 3,325,490 + CCNA_03166 0.63 +0.7 3,325,526 - CCNA_03166 0.68 -1.3 3,325,527 - CCNA_03166 0.68 -0.6 3,325,527 - CCNA_03166 0.68 +1.0 3,325,531 - CCNA_03166 0.69 -2.0 3,325,543 + CCNA_03166 0.70 -1.0 3,325,543 + CCNA_03166 0.70 -0.0 3,325,551 - CCNA_03166 0.71 -0.8 3,325,551 - CCNA_03166 0.71 +0.4 3,325,558 + CCNA_03166 0.72 -1.6 3,325,561 - CCNA_03166 0.73 -0.2 3,325,561 - CCNA_03166 0.73 -0.7 3,325,570 - CCNA_03166 0.74 -0.2 3,325,570 - CCNA_03166 0.74 +1.4 3,325,587 - CCNA_03166 0.77 -0.2 3,325,666 + CCNA_03166 0.88 +2.0 3,325,687 + -0.2 3,325,700 + +1.0 3,325,714 + -0.6 3,325,720 + -0.2 3,325,721 - +0.8 3,325,722 - -1.3 3,325,722 - -0.3 3,325,728 - +0.9 3,325,746 + -0.5 3,325,746 + -1.8 3,325,754 - +3.0 3,325,754 - +0.4 3,325,754 - +1.4 3,325,764 - +1.2 3,325,776 + -0.7 3,325,784 - -0.8 3,325,809 - -1.6 3,325,814 + -0.8 3,325,814 + +2.0 3,325,822 - +0.3 3,325,822 - -1.2 3,325,891 + CCNA_03167 0.13 -0.7 3,325,899 - CCNA_03167 0.14 +0.7 3,325,899 - CCNA_03167 0.14 +0.1 3,325,899 - CCNA_03167 0.14 -1.0 3,325,906 + CCNA_03167 0.15 +3.0 3,325,908 + CCNA_03167 0.15 +1.0 3,325,908 + CCNA_03167 0.15 +1.7 3,325,914 - CCNA_03167 0.16 -0.5 3,325,916 - CCNA_03167 0.16 +0.9 3,325,926 - CCNA_03167 0.18 -0.5 3,325,956 - CCNA_03167 0.21 +1.2 3,325,973 + CCNA_03167 0.23 +0.8 3,325,973 + CCNA_03167 0.23 +0.7 3,325,981 - CCNA_03167 0.24 -0.5 3,325,981 - CCNA_03167 0.24 +0.3 3,325,994 - CCNA_03167 0.25 -1.3 3,325,995 + CCNA_03167 0.26 +1.6 3,326,077 + CCNA_03167 0.35 -1.2 3,326,104 + CCNA_03167 0.38 +0.1 3,326,109 + CCNA_03167 0.39 +3.0 3,326,112 - CCNA_03167 0.39 -0.0 3,326,117 + CCNA_03167 0.40 -1.3 3,326,117 + CCNA_03167 0.40 +1.0 3,326,243 - CCNA_03167 0.55 -1.2 3,326,246 + CCNA_03167 0.55 +0.2 3,326,246 + CCNA_03167 0.55 -0.2 3,326,293 + CCNA_03167 0.60 +2.0 3,326,301 - CCNA_03167 0.61 -0.6 3,326,311 - CCNA_03167 0.63 -1.4 3,326,326 + CCNA_03167 0.64 +0.4 3,326,334 - CCNA_03167 0.65 +1.3 3,326,352 + CCNA_03167 0.67 +1.7 3,326,360 - CCNA_03167 0.68 +1.4 3,326,368 + CCNA_03167 0.69 -0.6 3,326,368 + CCNA_03167 0.69 +0.7 3,326,383 + CCNA_03167 0.71 +0.5 3,326,393 + CCNA_03167 0.72 +0.7 3,326,393 + CCNA_03167 0.72 +0.1 3,326,393 + CCNA_03167 0.72 +0.3 3,326,431 - CCNA_03167 0.77 -0.1 3,326,515 + CCNA_03167 0.86 +0.7 3,326,518 - CCNA_03167 0.87 -0.3 3,326,523 - CCNA_03167 0.87 -0.3 3,326,523 - CCNA_03167 0.87 -0.2 3,326,523 - CCNA_03167 0.87 +1.2 3,326,555 + -0.6 3,326,565 + +2.0 3,326,573 - +0.4 3,326,573 - +0.4 3,326,611 + +0.1 3,326,621 + -1.3 3,326,638 + -0.2 3,326,646 - +3.0
Or see this region's nucleotide sequence