Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03166

Experiment: N-Acetyl-D-glucosamine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_03165 and CCNA_03166 are separated by 72 nucleotidesCCNA_03166 and CCNA_03167 are separated by 24 nucleotides CCNA_03165: CCNA_03165 - major facilitator superfamily transporter, at 3,323,565 to 3,324,974 _03165 CCNA_03166: CCNA_03166 - ArsR-family transcriptional regulator, at 3,325,047 to 3,325,751 _03166 CCNA_03167: CCNA_03167 - hypothetical protein, at 3,325,776 to 3,326,630 _03167 Position (kb) 3325 3326Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3324.109 kb on - strand, within CCNA_03165at 3324.109 kb on - strand, within CCNA_03165at 3324.115 kb on - strand, within CCNA_03165at 3324.129 kb on + strand, within CCNA_03165at 3324.129 kb on + strand, within CCNA_03165at 3324.129 kb on + strand, within CCNA_03165at 3324.129 kb on + strand, within CCNA_03165at 3324.129 kb on + strand, within CCNA_03165at 3324.137 kb on - strand, within CCNA_03165at 3324.137 kb on - strand, within CCNA_03165at 3324.137 kb on - strand, within CCNA_03165at 3324.137 kb on - strand, within CCNA_03165at 3324.142 kb on - strand, within CCNA_03165at 3324.298 kb on + strand, within CCNA_03165at 3324.298 kb on + strand, within CCNA_03165at 3324.298 kb on + strand, within CCNA_03165at 3324.340 kb on + strand, within CCNA_03165at 3324.340 kb on + strand, within CCNA_03165at 3324.348 kb on - strand, within CCNA_03165at 3324.384 kb on - strand, within CCNA_03165at 3324.402 kb on + strand, within CCNA_03165at 3324.407 kb on + strand, within CCNA_03165at 3324.415 kb on - strand, within CCNA_03165at 3324.489 kb on + strand, within CCNA_03165at 3324.489 kb on + strand, within CCNA_03165at 3324.508 kb on - strand, within CCNA_03165at 3324.585 kb on + strand, within CCNA_03165at 3324.593 kb on + strand, within CCNA_03165at 3324.739 kb on - strand, within CCNA_03165at 3324.806 kb on - strandat 3324.806 kb on - strand, within CCNA_03165at 3324.816 kb on - strand, within CCNA_03165at 3324.835 kb on + strandat 3324.938 kb on - strandat 3324.978 kb on + strandat 3324.985 kb on - strandat 3325.031 kb on + strandat 3325.031 kb on + strandat 3325.031 kb on + strandat 3325.031 kb on + strandat 3325.031 kb on + strandat 3325.031 kb on + strandat 3325.031 kb on + strandat 3325.039 kb on - strandat 3325.039 kb on - strandat 3325.039 kb on - strandat 3325.039 kb on - strandat 3325.043 kb on + strandat 3325.074 kb on + strandat 3325.106 kb on + strandat 3325.146 kb on + strand, within CCNA_03166at 3325.146 kb on + strand, within CCNA_03166at 3325.146 kb on + strand, within CCNA_03166at 3325.146 kb on + strand, within CCNA_03166at 3325.146 kb on + strand, within CCNA_03166at 3325.154 kb on - strand, within CCNA_03166at 3325.154 kb on - strand, within CCNA_03166at 3325.154 kb on - strand, within CCNA_03166at 3325.159 kb on - strand, within CCNA_03166at 3325.204 kb on - strand, within CCNA_03166at 3325.220 kb on + strand, within CCNA_03166at 3325.262 kb on + strand, within CCNA_03166at 3325.287 kb on + strand, within CCNA_03166at 3325.344 kb on + strand, within CCNA_03166at 3325.344 kb on + strand, within CCNA_03166at 3325.344 kb on + strand, within CCNA_03166at 3325.349 kb on + strand, within CCNA_03166at 3325.351 kb on + strand, within CCNA_03166at 3325.352 kb on - strand, within CCNA_03166at 3325.412 kb on + strand, within CCNA_03166at 3325.417 kb on + strand, within CCNA_03166at 3325.490 kb on + strand, within CCNA_03166at 3325.526 kb on - strand, within CCNA_03166at 3325.527 kb on - strand, within CCNA_03166at 3325.527 kb on - strand, within CCNA_03166at 3325.531 kb on - strand, within CCNA_03166at 3325.543 kb on + strand, within CCNA_03166at 3325.543 kb on + strand, within CCNA_03166at 3325.551 kb on - strand, within CCNA_03166at 3325.551 kb on - strand, within CCNA_03166at 3325.558 kb on + strand, within CCNA_03166at 3325.561 kb on - strand, within CCNA_03166at 3325.561 kb on - strand, within CCNA_03166at 3325.570 kb on - strand, within CCNA_03166at 3325.570 kb on - strand, within CCNA_03166at 3325.587 kb on - strand, within CCNA_03166at 3325.666 kb on + strand, within CCNA_03166at 3325.687 kb on + strandat 3325.700 kb on + strandat 3325.714 kb on + strandat 3325.720 kb on + strandat 3325.721 kb on - strandat 3325.722 kb on - strandat 3325.722 kb on - strandat 3325.728 kb on - strandat 3325.746 kb on + strandat 3325.746 kb on + strandat 3325.754 kb on - strandat 3325.754 kb on - strandat 3325.754 kb on - strandat 3325.764 kb on - strandat 3325.776 kb on + strandat 3325.784 kb on - strandat 3325.809 kb on - strandat 3325.814 kb on + strandat 3325.814 kb on + strandat 3325.822 kb on - strandat 3325.822 kb on - strandat 3325.891 kb on + strand, within CCNA_03167at 3325.899 kb on - strand, within CCNA_03167at 3325.899 kb on - strand, within CCNA_03167at 3325.899 kb on - strand, within CCNA_03167at 3325.906 kb on + strand, within CCNA_03167at 3325.908 kb on + strand, within CCNA_03167at 3325.908 kb on + strand, within CCNA_03167at 3325.914 kb on - strand, within CCNA_03167at 3325.916 kb on - strand, within CCNA_03167at 3325.926 kb on - strand, within CCNA_03167at 3325.956 kb on - strand, within CCNA_03167at 3325.973 kb on + strand, within CCNA_03167at 3325.973 kb on + strand, within CCNA_03167at 3325.981 kb on - strand, within CCNA_03167at 3325.981 kb on - strand, within CCNA_03167at 3325.994 kb on - strand, within CCNA_03167at 3325.995 kb on + strand, within CCNA_03167at 3326.077 kb on + strand, within CCNA_03167at 3326.104 kb on + strand, within CCNA_03167at 3326.109 kb on + strand, within CCNA_03167at 3326.112 kb on - strand, within CCNA_03167at 3326.117 kb on + strand, within CCNA_03167at 3326.117 kb on + strand, within CCNA_03167at 3326.243 kb on - strand, within CCNA_03167at 3326.246 kb on + strand, within CCNA_03167at 3326.246 kb on + strand, within CCNA_03167at 3326.293 kb on + strand, within CCNA_03167at 3326.301 kb on - strand, within CCNA_03167at 3326.311 kb on - strand, within CCNA_03167at 3326.326 kb on + strand, within CCNA_03167at 3326.334 kb on - strand, within CCNA_03167at 3326.352 kb on + strand, within CCNA_03167at 3326.360 kb on - strand, within CCNA_03167at 3326.368 kb on + strand, within CCNA_03167at 3326.368 kb on + strand, within CCNA_03167at 3326.383 kb on + strand, within CCNA_03167at 3326.393 kb on + strand, within CCNA_03167at 3326.393 kb on + strand, within CCNA_03167at 3326.393 kb on + strand, within CCNA_03167at 3326.431 kb on - strand, within CCNA_03167at 3326.515 kb on + strand, within CCNA_03167at 3326.518 kb on - strand, within CCNA_03167at 3326.523 kb on - strand, within CCNA_03167at 3326.523 kb on - strand, within CCNA_03167at 3326.523 kb on - strand, within CCNA_03167at 3326.555 kb on + strandat 3326.565 kb on + strandat 3326.573 kb on - strandat 3326.573 kb on - strandat 3326.611 kb on + strandat 3326.621 kb on + strandat 3326.638 kb on + strandat 3326.646 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction N-Acetyl-D-glucosamine (N)
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3,324,109 - CCNA_03165 0.39 -1.0
3,324,109 - CCNA_03165 0.39 -0.0
3,324,115 - CCNA_03165 0.39 -1.0
3,324,129 + CCNA_03165 0.40 -2.1
3,324,129 + CCNA_03165 0.40 +1.0
3,324,129 + CCNA_03165 0.40 +0.9
3,324,129 + CCNA_03165 0.40 +0.9
3,324,129 + CCNA_03165 0.40 +1.1
3,324,137 - CCNA_03165 0.41 +0.5
3,324,137 - CCNA_03165 0.41 +2.0
3,324,137 - CCNA_03165 0.41 -0.0
3,324,137 - CCNA_03165 0.41 +0.4
3,324,142 - CCNA_03165 0.41 -0.1
3,324,298 + CCNA_03165 0.52 +1.4
3,324,298 + CCNA_03165 0.52 -0.0
3,324,298 + CCNA_03165 0.52 -0.2
3,324,340 + CCNA_03165 0.55 -0.5
3,324,340 + CCNA_03165 0.55 -0.2
3,324,348 - CCNA_03165 0.56 -0.8
3,324,384 - CCNA_03165 0.58 -0.2
3,324,402 + CCNA_03165 0.59 -1.6
3,324,407 + CCNA_03165 0.60 +0.4
3,324,415 - CCNA_03165 0.60 +0.3
3,324,489 + CCNA_03165 0.66 -1.1
3,324,489 + CCNA_03165 0.66 -0.4
3,324,508 - CCNA_03165 0.67 +0.8
3,324,585 + CCNA_03165 0.72 -0.3
3,324,593 + CCNA_03165 0.73 -0.1
3,324,739 - CCNA_03165 0.83 -0.3
3,324,806 - +0.7
3,324,806 - CCNA_03165 0.88 +0.8
3,324,816 - CCNA_03165 0.89 +1.0
3,324,835 + -0.8
3,324,938 - +0.7
3,324,978 + +2.0
3,324,985 - -2.4
3,325,031 + -1.4
3,325,031 + +0.4
3,325,031 + +1.2
3,325,031 + -0.1
3,325,031 + +0.2
3,325,031 + +2.4
3,325,031 + -0.6
3,325,039 - +1.4
3,325,039 - -1.2
3,325,039 - -0.8
3,325,039 - +0.1
3,325,043 + +1.8
3,325,074 + +3.0
3,325,106 + -0.3
3,325,146 + CCNA_03166 0.14 +0.4
3,325,146 + CCNA_03166 0.14 -0.2
3,325,146 + CCNA_03166 0.14 +1.8
3,325,146 + CCNA_03166 0.14 +1.4
3,325,146 + CCNA_03166 0.14 +1.5
3,325,154 - CCNA_03166 0.15 +2.8
3,325,154 - CCNA_03166 0.15 +1.2
3,325,154 - CCNA_03166 0.15 +0.7
3,325,159 - CCNA_03166 0.16 +0.3
3,325,204 - CCNA_03166 0.22 +1.5
3,325,220 + CCNA_03166 0.25 -0.5
3,325,262 + CCNA_03166 0.30 -0.1
3,325,287 + CCNA_03166 0.34 -1.1
3,325,344 + CCNA_03166 0.42 +1.1
3,325,344 + CCNA_03166 0.42 -1.0
3,325,344 + CCNA_03166 0.42 +1.9
3,325,349 + CCNA_03166 0.43 -0.2
3,325,351 + CCNA_03166 0.43 -0.3
3,325,352 - CCNA_03166 0.43 +0.9
3,325,412 + CCNA_03166 0.52 -0.6
3,325,417 + CCNA_03166 0.52 -2.0
3,325,490 + CCNA_03166 0.63 +0.7
3,325,526 - CCNA_03166 0.68 -1.3
3,325,527 - CCNA_03166 0.68 -0.6
3,325,527 - CCNA_03166 0.68 +1.0
3,325,531 - CCNA_03166 0.69 -2.0
3,325,543 + CCNA_03166 0.70 -1.0
3,325,543 + CCNA_03166 0.70 -0.0
3,325,551 - CCNA_03166 0.71 -0.8
3,325,551 - CCNA_03166 0.71 +0.4
3,325,558 + CCNA_03166 0.72 -1.6
3,325,561 - CCNA_03166 0.73 -0.2
3,325,561 - CCNA_03166 0.73 -0.7
3,325,570 - CCNA_03166 0.74 -0.2
3,325,570 - CCNA_03166 0.74 +1.4
3,325,587 - CCNA_03166 0.77 -0.2
3,325,666 + CCNA_03166 0.88 +2.0
3,325,687 + -0.2
3,325,700 + +1.0
3,325,714 + -0.6
3,325,720 + -0.2
3,325,721 - +0.8
3,325,722 - -1.3
3,325,722 - -0.3
3,325,728 - +0.9
3,325,746 + -0.5
3,325,746 + -1.8
3,325,754 - +3.0
3,325,754 - +0.4
3,325,754 - +1.4
3,325,764 - +1.2
3,325,776 + -0.7
3,325,784 - -0.8
3,325,809 - -1.6
3,325,814 + -0.8
3,325,814 + +2.0
3,325,822 - +0.3
3,325,822 - -1.2
3,325,891 + CCNA_03167 0.13 -0.7
3,325,899 - CCNA_03167 0.14 +0.7
3,325,899 - CCNA_03167 0.14 +0.1
3,325,899 - CCNA_03167 0.14 -1.0
3,325,906 + CCNA_03167 0.15 +3.0
3,325,908 + CCNA_03167 0.15 +1.0
3,325,908 + CCNA_03167 0.15 +1.7
3,325,914 - CCNA_03167 0.16 -0.5
3,325,916 - CCNA_03167 0.16 +0.9
3,325,926 - CCNA_03167 0.18 -0.5
3,325,956 - CCNA_03167 0.21 +1.2
3,325,973 + CCNA_03167 0.23 +0.8
3,325,973 + CCNA_03167 0.23 +0.7
3,325,981 - CCNA_03167 0.24 -0.5
3,325,981 - CCNA_03167 0.24 +0.3
3,325,994 - CCNA_03167 0.25 -1.3
3,325,995 + CCNA_03167 0.26 +1.6
3,326,077 + CCNA_03167 0.35 -1.2
3,326,104 + CCNA_03167 0.38 +0.1
3,326,109 + CCNA_03167 0.39 +3.0
3,326,112 - CCNA_03167 0.39 -0.0
3,326,117 + CCNA_03167 0.40 -1.3
3,326,117 + CCNA_03167 0.40 +1.0
3,326,243 - CCNA_03167 0.55 -1.2
3,326,246 + CCNA_03167 0.55 +0.2
3,326,246 + CCNA_03167 0.55 -0.2
3,326,293 + CCNA_03167 0.60 +2.0
3,326,301 - CCNA_03167 0.61 -0.6
3,326,311 - CCNA_03167 0.63 -1.4
3,326,326 + CCNA_03167 0.64 +0.4
3,326,334 - CCNA_03167 0.65 +1.3
3,326,352 + CCNA_03167 0.67 +1.7
3,326,360 - CCNA_03167 0.68 +1.4
3,326,368 + CCNA_03167 0.69 -0.6
3,326,368 + CCNA_03167 0.69 +0.7
3,326,383 + CCNA_03167 0.71 +0.5
3,326,393 + CCNA_03167 0.72 +0.7
3,326,393 + CCNA_03167 0.72 +0.1
3,326,393 + CCNA_03167 0.72 +0.3
3,326,431 - CCNA_03167 0.77 -0.1
3,326,515 + CCNA_03167 0.86 +0.7
3,326,518 - CCNA_03167 0.87 -0.3
3,326,523 - CCNA_03167 0.87 -0.3
3,326,523 - CCNA_03167 0.87 -0.2
3,326,523 - CCNA_03167 0.87 +1.2
3,326,555 + -0.6
3,326,565 + +2.0
3,326,573 - +0.4
3,326,573 - +0.4
3,326,611 + +0.1
3,326,621 + -1.3
3,326,638 + -0.2
3,326,646 - +3.0

Or see this region's nucleotide sequence