Experiment: N-Acetyl-D-glucosamine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03090 and CCNA_03091 are separated by 279 nucleotides CCNA_03091 and CCNA_03092 are separated by 100 nucleotides
CCNA_03090: CCNA_03090 - acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, at 3,239,258 to 3,240,220
_03090
CCNA_03091: CCNA_03091 - redox cell cycle regulatory protein NstA, at 3,240,500 to 3,240,700
_03091
CCNA_03092: CCNA_03092 - cytochrome P450 family protein, at 3,240,801 to 3,242,177
_03092
Position (kb)
3240
3241 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3240.224 kb on - strand at 3240.287 kb on - strand at 3240.360 kb on + strand at 3240.380 kb on + strand at 3240.393 kb on + strand at 3240.398 kb on + strand at 3240.398 kb on + strand at 3240.398 kb on + strand at 3240.398 kb on + strand at 3240.401 kb on - strand at 3240.406 kb on - strand at 3240.406 kb on - strand at 3240.406 kb on - strand at 3240.464 kb on - strand at 3240.475 kb on + strand at 3240.480 kb on + strand at 3240.483 kb on - strand at 3240.488 kb on - strand at 3240.494 kb on + strand at 3240.502 kb on - strand at 3240.502 kb on - strand at 3240.505 kb on + strand at 3240.514 kb on - strand at 3240.517 kb on + strand at 3240.550 kb on - strand, within CCNA_03091 at 3240.640 kb on + strand, within CCNA_03091 at 3240.695 kb on + strand at 3240.776 kb on + strand at 3240.776 kb on + strand at 3240.776 kb on + strand at 3240.776 kb on + strand at 3240.776 kb on + strand at 3240.776 kb on + strand at 3240.784 kb on + strand at 3240.833 kb on - strand at 3240.856 kb on - strand at 3240.860 kb on + strand at 3240.871 kb on + strand at 3240.920 kb on + strand at 3240.961 kb on - strand, within CCNA_03092 at 3240.963 kb on + strand, within CCNA_03092 at 3240.969 kb on - strand, within CCNA_03092 at 3240.971 kb on + strand, within CCNA_03092 at 3241.023 kb on + strand, within CCNA_03092 at 3241.051 kb on + strand, within CCNA_03092 at 3241.079 kb on - strand, within CCNA_03092 at 3241.092 kb on + strand, within CCNA_03092 at 3241.105 kb on - strand, within CCNA_03092 at 3241.110 kb on + strand, within CCNA_03092 at 3241.117 kb on - strand, within CCNA_03092 at 3241.117 kb on - strand, within CCNA_03092 at 3241.133 kb on - strand, within CCNA_03092 at 3241.159 kb on - strand, within CCNA_03092 at 3241.181 kb on + strand, within CCNA_03092 at 3241.240 kb on - strand, within CCNA_03092 at 3241.240 kb on - strand, within CCNA_03092 at 3241.247 kb on + strand, within CCNA_03092 at 3241.247 kb on + strand, within CCNA_03092 at 3241.247 kb on + strand, within CCNA_03092 at 3241.247 kb on + strand, within CCNA_03092 at 3241.247 kb on + strand, within CCNA_03092 at 3241.254 kb on + strand, within CCNA_03092 at 3241.262 kb on - strand, within CCNA_03092 at 3241.262 kb on - strand, within CCNA_03092 at 3241.264 kb on + strand, within CCNA_03092 at 3241.281 kb on + strand, within CCNA_03092 at 3241.286 kb on - strand, within CCNA_03092 at 3241.288 kb on + strand, within CCNA_03092 at 3241.289 kb on - strand, within CCNA_03092 at 3241.317 kb on - strand, within CCNA_03092 at 3241.333 kb on + strand, within CCNA_03092 at 3241.333 kb on + strand, within CCNA_03092 at 3241.341 kb on - strand, within CCNA_03092 at 3241.341 kb on - strand, within CCNA_03092 at 3241.360 kb on + strand, within CCNA_03092 at 3241.368 kb on + strand, within CCNA_03092 at 3241.369 kb on + strand, within CCNA_03092 at 3241.457 kb on - strand, within CCNA_03092 at 3241.480 kb on - strand, within CCNA_03092 at 3241.496 kb on + strand, within CCNA_03092 at 3241.504 kb on - strand, within CCNA_03092 at 3241.504 kb on - strand, within CCNA_03092 at 3241.518 kb on + strand, within CCNA_03092 at 3241.518 kb on + strand, within CCNA_03092 at 3241.518 kb on + strand, within CCNA_03092 at 3241.518 kb on + strand, within CCNA_03092 at 3241.518 kb on + strand, within CCNA_03092 at 3241.526 kb on - strand, within CCNA_03092 at 3241.587 kb on - strand, within CCNA_03092 at 3241.589 kb on + strand, within CCNA_03092 at 3241.589 kb on + strand, within CCNA_03092 at 3241.589 kb on + strand, within CCNA_03092 at 3241.589 kb on + strand, within CCNA_03092 at 3241.589 kb on + strand, within CCNA_03092 at 3241.589 kb on + strand, within CCNA_03092 at 3241.589 kb on + strand, within CCNA_03092 at 3241.597 kb on - strand, within CCNA_03092 at 3241.597 kb on - strand, within CCNA_03092 at 3241.597 kb on - strand, within CCNA_03092 at 3241.597 kb on - strand, within CCNA_03092 at 3241.624 kb on + strand, within CCNA_03092 at 3241.624 kb on + strand, within CCNA_03092 at 3241.637 kb on + strand, within CCNA_03092 at 3241.637 kb on + strand, within CCNA_03092 at 3241.637 kb on + strand, within CCNA_03092 at 3241.637 kb on + strand, within CCNA_03092 at 3241.645 kb on - strand, within CCNA_03092 at 3241.645 kb on - strand, within CCNA_03092 at 3241.645 kb on - strand, within CCNA_03092 at 3241.685 kb on + strand, within CCNA_03092 at 3241.693 kb on - strand, within CCNA_03092 at 3241.698 kb on + strand, within CCNA_03092
Per-strain Table
Position Strand Gene LocusTag Fraction N-Acetyl-D-glucosamine (N) remove 3,240,224 - +1.0 3,240,287 - -0.9 3,240,360 + -2.5 3,240,380 + +0.1 3,240,393 + +0.4 3,240,398 + -0.6 3,240,398 + -1.0 3,240,398 + +0.6 3,240,398 + -1.8 3,240,401 - -0.4 3,240,406 - +2.0 3,240,406 - +0.4 3,240,406 - -0.2 3,240,464 - +0.4 3,240,475 + -0.5 3,240,480 + -1.4 3,240,483 - +2.0 3,240,488 - +0.4 3,240,494 + +2.2 3,240,502 - -0.4 3,240,502 - -1.4 3,240,505 + +0.4 3,240,514 - -0.2 3,240,517 + +0.8 3,240,550 - CCNA_03091 0.25 -0.4 3,240,640 + CCNA_03091 0.70 -1.2 3,240,695 + -0.4 3,240,776 + +0.1 3,240,776 + -0.2 3,240,776 + +0.1 3,240,776 + -0.0 3,240,776 + -0.6 3,240,776 + +0.4 3,240,784 + +0.8 3,240,833 - -1.4 3,240,856 - -0.8 3,240,860 + -0.2 3,240,871 + -0.4 3,240,920 + +0.9 3,240,961 - CCNA_03092 0.12 -1.9 3,240,963 + CCNA_03092 0.12 +0.1 3,240,969 - CCNA_03092 0.12 -0.2 3,240,971 + CCNA_03092 0.12 +3.0 3,241,023 + CCNA_03092 0.16 -0.6 3,241,051 + CCNA_03092 0.18 -0.3 3,241,079 - CCNA_03092 0.20 -0.4 3,241,092 + CCNA_03092 0.21 +0.1 3,241,105 - CCNA_03092 0.22 -0.2 3,241,110 + CCNA_03092 0.22 -0.9 3,241,117 - CCNA_03092 0.23 -1.4 3,241,117 - CCNA_03092 0.23 -0.5 3,241,133 - CCNA_03092 0.24 +1.2 3,241,159 - CCNA_03092 0.26 -1.7 3,241,181 + CCNA_03092 0.28 -1.8 3,241,240 - CCNA_03092 0.32 +1.4 3,241,240 - CCNA_03092 0.32 -0.4 3,241,247 + CCNA_03092 0.32 -0.4 3,241,247 + CCNA_03092 0.32 -0.3 3,241,247 + CCNA_03092 0.32 +0.0 3,241,247 + CCNA_03092 0.32 +1.4 3,241,247 + CCNA_03092 0.32 -0.6 3,241,254 + CCNA_03092 0.33 -0.2 3,241,262 - CCNA_03092 0.33 -0.5 3,241,262 - CCNA_03092 0.33 -0.2 3,241,264 + CCNA_03092 0.34 -0.9 3,241,281 + CCNA_03092 0.35 -0.9 3,241,286 - CCNA_03092 0.35 -0.1 3,241,288 + CCNA_03092 0.35 -1.4 3,241,289 - CCNA_03092 0.35 +1.0 3,241,317 - CCNA_03092 0.37 +1.6 3,241,333 + CCNA_03092 0.39 -0.9 3,241,333 + CCNA_03092 0.39 -1.4 3,241,341 - CCNA_03092 0.39 +1.2 3,241,341 - CCNA_03092 0.39 -1.5 3,241,360 + CCNA_03092 0.41 -0.0 3,241,368 + CCNA_03092 0.41 +0.0 3,241,369 + CCNA_03092 0.41 +2.4 3,241,457 - CCNA_03092 0.48 +2.2 3,241,480 - CCNA_03092 0.49 -0.5 3,241,496 + CCNA_03092 0.50 -1.8 3,241,504 - CCNA_03092 0.51 -0.0 3,241,504 - CCNA_03092 0.51 -0.2 3,241,518 + CCNA_03092 0.52 -0.5 3,241,518 + CCNA_03092 0.52 -0.6 3,241,518 + CCNA_03092 0.52 +0.9 3,241,518 + CCNA_03092 0.52 -1.6 3,241,518 + CCNA_03092 0.52 -0.6 3,241,526 - CCNA_03092 0.53 +0.9 3,241,587 - CCNA_03092 0.57 -0.4 3,241,589 + CCNA_03092 0.57 -1.9 3,241,589 + CCNA_03092 0.57 -1.8 3,241,589 + CCNA_03092 0.57 -0.4 3,241,589 + CCNA_03092 0.57 +1.7 3,241,589 + CCNA_03092 0.57 -0.1 3,241,589 + CCNA_03092 0.57 +0.7 3,241,589 + CCNA_03092 0.57 +0.6 3,241,597 - CCNA_03092 0.58 -1.3 3,241,597 - CCNA_03092 0.58 -0.7 3,241,597 - CCNA_03092 0.58 +1.1 3,241,597 - CCNA_03092 0.58 +1.0 3,241,624 + CCNA_03092 0.60 -0.6 3,241,624 + CCNA_03092 0.60 -0.1 3,241,637 + CCNA_03092 0.61 -1.0 3,241,637 + CCNA_03092 0.61 +0.8 3,241,637 + CCNA_03092 0.61 -1.9 3,241,637 + CCNA_03092 0.61 -1.4 3,241,645 - CCNA_03092 0.61 -1.1 3,241,645 - CCNA_03092 0.61 -0.4 3,241,645 - CCNA_03092 0.61 +1.0 3,241,685 + CCNA_03092 0.64 +1.2 3,241,693 - CCNA_03092 0.65 -0.3 3,241,698 + CCNA_03092 0.65 -0.9
Or see this region's nucleotide sequence