Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02926

Experiment: N-Acetyl-D-glucosamine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_02925 and CCNA_02926 are separated by 279 nucleotidesCCNA_02926 and CCNA_02927 are separated by 148 nucleotides CCNA_02925: CCNA_02925 - carbamoyl-phosphate synthase small chain, at 3,086,931 to 3,088,097 _02925 CCNA_02926: CCNA_02926 - hypothetical protein, at 3,088,377 to 3,088,547 _02926 CCNA_02927: CCNA_02927 - short chain dehydrogenase, at 3,088,696 to 3,089,433 _02927 Position (kb) 3088 3089Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3088.098 kb on + strandat 3088.190 kb on + strandat 3088.198 kb on - strandat 3088.208 kb on - strandat 3088.208 kb on - strandat 3088.224 kb on + strandat 3088.280 kb on + strandat 3088.280 kb on + strandat 3088.288 kb on - strandat 3088.301 kb on + strandat 3088.301 kb on + strandat 3088.301 kb on + strandat 3088.307 kb on + strandat 3088.309 kb on - strandat 3088.312 kb on + strandat 3088.320 kb on - strandat 3088.320 kb on - strandat 3088.324 kb on + strandat 3088.324 kb on + strandat 3088.324 kb on + strandat 3088.332 kb on - strandat 3088.332 kb on - strandat 3088.332 kb on - strandat 3088.344 kb on + strandat 3088.368 kb on - strandat 3088.368 kb on - strandat 3088.369 kb on - strandat 3088.389 kb on + strandat 3088.389 kb on + strandat 3088.405 kb on + strand, within CCNA_02926at 3088.413 kb on - strand, within CCNA_02926at 3088.434 kb on - strand, within CCNA_02926at 3088.437 kb on + strand, within CCNA_02926at 3088.466 kb on - strand, within CCNA_02926at 3088.490 kb on - strand, within CCNA_02926at 3088.490 kb on - strand, within CCNA_02926at 3088.550 kb on + strandat 3088.558 kb on - strandat 3088.558 kb on - strandat 3088.602 kb on - strandat 3088.616 kb on + strandat 3088.616 kb on + strandat 3088.616 kb on + strandat 3088.616 kb on + strandat 3088.616 kb on + strandat 3088.616 kb on + strandat 3088.616 kb on + strandat 3088.616 kb on + strandat 3088.624 kb on - strandat 3088.624 kb on - strandat 3088.624 kb on - strandat 3088.624 kb on - strandat 3088.624 kb on - strandat 3088.624 kb on - strandat 3088.649 kb on + strandat 3088.649 kb on + strandat 3088.657 kb on - strandat 3088.659 kb on + strandat 3088.664 kb on + strandat 3088.672 kb on - strandat 3088.778 kb on + strand, within CCNA_02927at 3088.778 kb on + strand, within CCNA_02927at 3088.778 kb on + strand, within CCNA_02927at 3088.786 kb on - strand, within CCNA_02927at 3088.786 kb on - strand, within CCNA_02927at 3088.786 kb on - strand, within CCNA_02927at 3088.786 kb on - strand, within CCNA_02927at 3088.811 kb on + strand, within CCNA_02927at 3088.815 kb on - strand, within CCNA_02927at 3088.844 kb on - strand, within CCNA_02927at 3088.853 kb on + strand, within CCNA_02927at 3088.853 kb on + strand, within CCNA_02927at 3088.861 kb on - strand, within CCNA_02927at 3088.873 kb on + strand, within CCNA_02927at 3088.874 kb on + strand, within CCNA_02927at 3088.874 kb on + strand, within CCNA_02927at 3088.881 kb on - strand, within CCNA_02927at 3088.882 kb on - strand, within CCNA_02927at 3088.882 kb on - strand, within CCNA_02927at 3088.919 kb on + strand, within CCNA_02927at 3088.929 kb on + strand, within CCNA_02927at 3088.929 kb on + strand, within CCNA_02927at 3088.945 kb on - strandat 3088.953 kb on - strand, within CCNA_02927at 3088.954 kb on - strand, within CCNA_02927at 3088.954 kb on - strand, within CCNA_02927at 3088.956 kb on + strand, within CCNA_02927at 3088.959 kb on - strand, within CCNA_02927at 3088.964 kb on - strand, within CCNA_02927at 3088.970 kb on - strand, within CCNA_02927at 3089.021 kb on - strand, within CCNA_02927at 3089.036 kb on + strand, within CCNA_02927at 3089.038 kb on + strand, within CCNA_02927at 3089.044 kb on - strand, within CCNA_02927at 3089.048 kb on + strand, within CCNA_02927at 3089.051 kb on - strand, within CCNA_02927at 3089.058 kb on + strand, within CCNA_02927at 3089.080 kb on + strand, within CCNA_02927at 3089.154 kb on + strand, within CCNA_02927at 3089.154 kb on + strand, within CCNA_02927at 3089.154 kb on + strand, within CCNA_02927at 3089.154 kb on + strand, within CCNA_02927at 3089.162 kb on - strand, within CCNA_02927at 3089.186 kb on + strand, within CCNA_02927at 3089.191 kb on + strand, within CCNA_02927at 3089.191 kb on + strand, within CCNA_02927at 3089.194 kb on - strand, within CCNA_02927at 3089.199 kb on - strand, within CCNA_02927at 3089.204 kb on - strand, within CCNA_02927at 3089.204 kb on - strand, within CCNA_02927at 3089.204 kb on - strand, within CCNA_02927at 3089.228 kb on + strand, within CCNA_02927at 3089.228 kb on + strand, within CCNA_02927at 3089.228 kb on - strand, within CCNA_02927at 3089.228 kb on - strand, within CCNA_02927at 3089.244 kb on + strand, within CCNA_02927at 3089.257 kb on - strand, within CCNA_02927at 3089.268 kb on - strand, within CCNA_02927at 3089.273 kb on - strand, within CCNA_02927at 3089.278 kb on - strand, within CCNA_02927at 3089.292 kb on + strand, within CCNA_02927at 3089.293 kb on + strand, within CCNA_02927at 3089.300 kb on - strand, within CCNA_02927at 3089.324 kb on + strand, within CCNA_02927at 3089.346 kb on + strand, within CCNA_02927at 3089.346 kb on + strand, within CCNA_02927at 3089.369 kb on - strandat 3089.391 kb on - strandat 3089.395 kb on + strandat 3089.410 kb on - strandat 3089.418 kb on - strandat 3089.502 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction N-Acetyl-D-glucosamine (N)
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3,088,098 + +3.0
3,088,190 + +0.3
3,088,198 - -0.1
3,088,208 - +0.3
3,088,208 - +0.2
3,088,224 + -0.3
3,088,280 + +0.8
3,088,280 + -1.2
3,088,288 - +0.0
3,088,301 + +0.4
3,088,301 + +0.5
3,088,301 + +1.1
3,088,307 + +0.7
3,088,309 - +0.7
3,088,312 + -0.2
3,088,320 - +0.9
3,088,320 - +0.4
3,088,324 + -0.6
3,088,324 + -0.4
3,088,324 + -0.1
3,088,332 - +0.4
3,088,332 - +1.6
3,088,332 - +1.4
3,088,344 + -0.9
3,088,368 - +1.4
3,088,368 - -1.5
3,088,369 - -0.4
3,088,389 + -0.9
3,088,389 + +0.8
3,088,405 + CCNA_02926 0.16 +0.2
3,088,413 - CCNA_02926 0.21 -2.0
3,088,434 - CCNA_02926 0.33 +0.0
3,088,437 + CCNA_02926 0.35 -1.1
3,088,466 - CCNA_02926 0.52 +0.0
3,088,490 - CCNA_02926 0.66 +0.4
3,088,490 - CCNA_02926 0.66 -1.1
3,088,550 + +0.9
3,088,558 - +0.8
3,088,558 - +1.1
3,088,602 - -0.9
3,088,616 + -0.4
3,088,616 + -1.5
3,088,616 + +0.1
3,088,616 + -0.2
3,088,616 + +0.0
3,088,616 + -0.3
3,088,616 + +1.7
3,088,616 + +0.5
3,088,624 - +0.7
3,088,624 - -0.6
3,088,624 - -0.7
3,088,624 - -1.9
3,088,624 - -0.9
3,088,624 - -1.0
3,088,649 + +0.8
3,088,649 + -1.4
3,088,657 - -1.5
3,088,659 + +2.0
3,088,664 + +0.0
3,088,672 - -0.8
3,088,778 + CCNA_02927 0.11 +3.0
3,088,778 + CCNA_02927 0.11 +0.2
3,088,778 + CCNA_02927 0.11 -2.0
3,088,786 - CCNA_02927 0.12 +0.3
3,088,786 - CCNA_02927 0.12 -1.1
3,088,786 - CCNA_02927 0.12 +0.7
3,088,786 - CCNA_02927 0.12 +1.1
3,088,811 + CCNA_02927 0.16 -0.5
3,088,815 - CCNA_02927 0.16 +1.6
3,088,844 - CCNA_02927 0.20 -0.9
3,088,853 + CCNA_02927 0.21 +0.2
3,088,853 + CCNA_02927 0.21 -2.0
3,088,861 - CCNA_02927 0.22 +1.0
3,088,873 + CCNA_02927 0.24 -1.2
3,088,874 + CCNA_02927 0.24 +1.9
3,088,874 + CCNA_02927 0.24 -0.3
3,088,881 - CCNA_02927 0.25 -0.5
3,088,882 - CCNA_02927 0.25 +0.8
3,088,882 - CCNA_02927 0.25 +1.0
3,088,919 + CCNA_02927 0.30 +2.1
3,088,929 + CCNA_02927 0.32 -1.0
3,088,929 + CCNA_02927 0.32 -0.2
3,088,945 - +2.0
3,088,953 - CCNA_02927 0.35 -1.0
3,088,954 - CCNA_02927 0.35 -0.1
3,088,954 - CCNA_02927 0.35 +0.4
3,088,956 + CCNA_02927 0.35 -0.5
3,088,959 - CCNA_02927 0.36 +0.4
3,088,964 - CCNA_02927 0.36 -0.2
3,088,970 - CCNA_02927 0.37 +0.3
3,089,021 - CCNA_02927 0.44 +0.3
3,089,036 + CCNA_02927 0.46 +1.3
3,089,038 + CCNA_02927 0.46 +0.2
3,089,044 - CCNA_02927 0.47 +1.1
3,089,048 + CCNA_02927 0.48 +0.3
3,089,051 - CCNA_02927 0.48 -1.1
3,089,058 + CCNA_02927 0.49 -0.5
3,089,080 + CCNA_02927 0.52 -1.1
3,089,154 + CCNA_02927 0.62 +0.5
3,089,154 + CCNA_02927 0.62 -0.8
3,089,154 + CCNA_02927 0.62 +0.6
3,089,154 + CCNA_02927 0.62 -0.6
3,089,162 - CCNA_02927 0.63 -0.5
3,089,186 + CCNA_02927 0.66 -0.7
3,089,191 + CCNA_02927 0.67 +1.1
3,089,191 + CCNA_02927 0.67 +1.0
3,089,194 - CCNA_02927 0.67 -0.3
3,089,199 - CCNA_02927 0.68 +0.6
3,089,204 - CCNA_02927 0.69 +1.4
3,089,204 - CCNA_02927 0.69 -0.5
3,089,204 - CCNA_02927 0.69 -0.0
3,089,228 + CCNA_02927 0.72 -0.8
3,089,228 + CCNA_02927 0.72 -1.5
3,089,228 - CCNA_02927 0.72 -1.5
3,089,228 - CCNA_02927 0.72 +1.0
3,089,244 + CCNA_02927 0.74 -0.5
3,089,257 - CCNA_02927 0.76 -1.6
3,089,268 - CCNA_02927 0.78 +0.5
3,089,273 - CCNA_02927 0.78 -0.8
3,089,278 - CCNA_02927 0.79 +0.5
3,089,292 + CCNA_02927 0.81 -0.3
3,089,293 + CCNA_02927 0.81 +2.0
3,089,300 - CCNA_02927 0.82 -1.0
3,089,324 + CCNA_02927 0.85 -1.5
3,089,346 + CCNA_02927 0.88 -1.1
3,089,346 + CCNA_02927 0.88 -1.0
3,089,369 - -0.8
3,089,391 - +0.7
3,089,395 + -1.6
3,089,410 - +1.4
3,089,418 - -1.2
3,089,502 + +1.3

Or see this region's nucleotide sequence