Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02582

Experiment: N-Acetyl-D-glucosamine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_02579 and CCNA_02580 are separated by 10 nucleotidesCCNA_02580 and CCNA_02581 are separated by 310 nucleotidesCCNA_02581 and CCNA_02582 overlap by 14 nucleotidesCCNA_02582 and CCNA_02583 are separated by 66 nucleotidesCCNA_02583 and CCNA_03970 are separated by 105 nucleotides CCNA_02579: CCNA_02579 - cytochrome P450, at 2,729,929 to 2,731,203 _02579 CCNA_02580: CCNA_02580 - rubredoxin, at 2,731,214 to 2,731,393 _02580 CCNA_02581: CCNA_02581 - hypothetical protein, at 2,731,704 to 2,732,189 _02581 CCNA_02582: CCNA_02582 - hypothetical protein, at 2,732,176 to 2,732,322 _02582 CCNA_02583: CCNA_02583 - phosphoribosylformylglycinamidine synthase I, at 2,732,389 to 2,733,051 _02583 CCNA_03970: CCNA_03970 - hypothetical protein, at 2,733,157 to 2,733,348 _03970 Position (kb) 2732 2733Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 2731.218 kb on + strandat 2731.227 kb on + strandat 2731.235 kb on - strand, within CCNA_02580at 2731.256 kb on + strand, within CCNA_02580at 2731.274 kb on + strand, within CCNA_02580at 2731.293 kb on - strand, within CCNA_02580at 2731.334 kb on + strand, within CCNA_02580at 2731.334 kb on + strand, within CCNA_02580at 2731.334 kb on + strand, within CCNA_02580at 2731.339 kb on + strand, within CCNA_02580at 2731.372 kb on + strand, within CCNA_02580at 2731.411 kb on - strandat 2731.429 kb on + strandat 2731.449 kb on + strandat 2731.467 kb on - strandat 2731.474 kb on + strandat 2731.474 kb on + strandat 2731.475 kb on - strandat 2731.508 kb on + strandat 2731.508 kb on + strandat 2731.508 kb on + strandat 2731.516 kb on - strandat 2731.516 kb on - strandat 2731.520 kb on + strandat 2731.523 kb on + strandat 2731.525 kb on + strandat 2731.533 kb on - strandat 2731.533 kb on - strandat 2731.551 kb on + strandat 2731.665 kb on - strandat 2731.674 kb on + strandat 2731.698 kb on + strandat 2731.698 kb on + strandat 2731.730 kb on + strandat 2731.730 kb on + strandat 2731.738 kb on - strandat 2731.738 kb on - strandat 2731.738 kb on - strandat 2731.738 kb on - strandat 2731.738 kb on - strandat 2731.745 kb on + strandat 2731.745 kb on + strandat 2731.745 kb on + strandat 2731.781 kb on - strand, within CCNA_02581at 2731.821 kb on + strand, within CCNA_02581at 2731.830 kb on + strand, within CCNA_02581at 2731.854 kb on - strand, within CCNA_02581at 2731.872 kb on + strand, within CCNA_02581at 2731.967 kb on + strand, within CCNA_02581at 2731.967 kb on + strand, within CCNA_02581at 2732.012 kb on + strand, within CCNA_02581at 2732.020 kb on - strand, within CCNA_02581at 2732.023 kb on - strand, within CCNA_02581at 2732.025 kb on + strand, within CCNA_02581at 2732.027 kb on + strand, within CCNA_02581at 2732.056 kb on + strand, within CCNA_02581at 2732.056 kb on + strand, within CCNA_02581at 2732.056 kb on + strand, within CCNA_02581at 2732.087 kb on + strand, within CCNA_02581at 2732.122 kb on + strand, within CCNA_02581at 2732.177 kb on - strandat 2732.182 kb on - strandat 2732.183 kb on + strandat 2732.224 kb on - strand, within CCNA_02582at 2732.253 kb on + strand, within CCNA_02582at 2732.261 kb on - strand, within CCNA_02582at 2732.268 kb on + strand, within CCNA_02582at 2732.268 kb on + strand, within CCNA_02582at 2732.273 kb on + strand, within CCNA_02582at 2732.348 kb on + strandat 2732.348 kb on + strandat 2732.356 kb on - strandat 2732.371 kb on + strandat 2732.371 kb on + strandat 2732.459 kb on + strand, within CCNA_02583at 2732.459 kb on + strand, within CCNA_02583at 2732.459 kb on + strand, within CCNA_02583at 2732.461 kb on + strand, within CCNA_02583at 2732.467 kb on - strand, within CCNA_02583at 2732.467 kb on - strand, within CCNA_02583at 2732.513 kb on + strand, within CCNA_02583at 2732.513 kb on + strand, within CCNA_02583at 2732.517 kb on + strand, within CCNA_02583at 2732.675 kb on - strand, within CCNA_02583at 2732.755 kb on + strand, within CCNA_02583at 2732.808 kb on - strand, within CCNA_02583at 2732.832 kb on - strand, within CCNA_02583at 2732.853 kb on + strand, within CCNA_02583at 2732.856 kb on - strand, within CCNA_02583at 2732.872 kb on + strand, within CCNA_02583at 2732.881 kb on + strand, within CCNA_02583at 2732.889 kb on - strand, within CCNA_02583at 2733.003 kb on - strandat 2733.024 kb on + strandat 2733.027 kb on - strandat 2733.075 kb on + strandat 2733.104 kb on + strandat 2733.169 kb on + strandat 2733.169 kb on + strandat 2733.177 kb on - strand, within CCNA_03970at 2733.225 kb on - strandat 2733.252 kb on + strand, within CCNA_03970at 2733.301 kb on - strand, within CCNA_03970

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Per-strain Table

Position Strand Gene LocusTag Fraction N-Acetyl-D-glucosamine (N)
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2,731,218 + -0.7
2,731,227 + +0.3
2,731,235 - CCNA_02580 0.12 -0.8
2,731,256 + CCNA_02580 0.23 +1.4
2,731,274 + CCNA_02580 0.33 -0.7
2,731,293 - CCNA_02580 0.44 -0.7
2,731,334 + CCNA_02580 0.67 +1.0
2,731,334 + CCNA_02580 0.67 -0.8
2,731,334 + CCNA_02580 0.67 -0.0
2,731,339 + CCNA_02580 0.69 -0.1
2,731,372 + CCNA_02580 0.88 -1.9
2,731,411 - -0.0
2,731,429 + -0.8
2,731,449 + -0.5
2,731,467 - -0.2
2,731,474 + +2.0
2,731,474 + +2.0
2,731,475 - -0.7
2,731,508 + -0.3
2,731,508 + +2.8
2,731,508 + -1.4
2,731,516 - -1.0
2,731,516 - +0.3
2,731,520 + -0.2
2,731,523 + -0.0
2,731,525 + -2.1
2,731,533 - +0.6
2,731,533 - +2.0
2,731,551 + -1.3
2,731,665 - -1.2
2,731,674 + -1.4
2,731,698 + +0.2
2,731,698 + -0.7
2,731,730 + +1.0
2,731,730 + -1.6
2,731,738 - +1.0
2,731,738 - -0.9
2,731,738 - +0.1
2,731,738 - +0.4
2,731,738 - +1.0
2,731,745 + -1.4
2,731,745 + -0.9
2,731,745 + +0.2
2,731,781 - CCNA_02581 0.16 +0.4
2,731,821 + CCNA_02581 0.24 -0.7
2,731,830 + CCNA_02581 0.26 +0.9
2,731,854 - CCNA_02581 0.31 -1.0
2,731,872 + CCNA_02581 0.35 +0.4
2,731,967 + CCNA_02581 0.54 -1.4
2,731,967 + CCNA_02581 0.54 +0.0
2,732,012 + CCNA_02581 0.63 -0.5
2,732,020 - CCNA_02581 0.65 +3.8
2,732,023 - CCNA_02581 0.66 -0.2
2,732,025 + CCNA_02581 0.66 -0.7
2,732,027 + CCNA_02581 0.66 -0.0
2,732,056 + CCNA_02581 0.72 -0.1
2,732,056 + CCNA_02581 0.72 +2.6
2,732,056 + CCNA_02581 0.72 -0.4
2,732,087 + CCNA_02581 0.79 +2.6
2,732,122 + CCNA_02581 0.86 -0.1
2,732,177 - +1.2
2,732,182 - -0.0
2,732,183 + -0.9
2,732,224 - CCNA_02582 0.33 -0.6
2,732,253 + CCNA_02582 0.52 -1.1
2,732,261 - CCNA_02582 0.58 -0.8
2,732,268 + CCNA_02582 0.63 -1.4
2,732,268 + CCNA_02582 0.63 +0.2
2,732,273 + CCNA_02582 0.66 +0.6
2,732,348 + +0.7
2,732,348 + -0.9
2,732,356 - +1.8
2,732,371 + -0.1
2,732,371 + -1.2
2,732,459 + CCNA_02583 0.11 +0.2
2,732,459 + CCNA_02583 0.11 -0.9
2,732,459 + CCNA_02583 0.11 +2.0
2,732,461 + CCNA_02583 0.11 +1.1
2,732,467 - CCNA_02583 0.12 -0.8
2,732,467 - CCNA_02583 0.12 -0.9
2,732,513 + CCNA_02583 0.19 +1.0
2,732,513 + CCNA_02583 0.19 +1.4
2,732,517 + CCNA_02583 0.19 -1.3
2,732,675 - CCNA_02583 0.43 -0.4
2,732,755 + CCNA_02583 0.55 -1.2
2,732,808 - CCNA_02583 0.63 -1.5
2,732,832 - CCNA_02583 0.67 -1.7
2,732,853 + CCNA_02583 0.70 -0.3
2,732,856 - CCNA_02583 0.70 -1.7
2,732,872 + CCNA_02583 0.73 +0.3
2,732,881 + CCNA_02583 0.74 -0.8
2,732,889 - CCNA_02583 0.75 +0.0
2,733,003 - -0.9
2,733,024 + -1.0
2,733,027 - -1.0
2,733,075 + +1.0
2,733,104 + +0.8
2,733,169 + +1.4
2,733,169 + -1.2
2,733,177 - CCNA_03970 0.10 -0.2
2,733,225 - +2.2
2,733,252 + CCNA_03970 0.49 +0.5
2,733,301 - CCNA_03970 0.75 +0.4

Or see this region's nucleotide sequence