Experiment: N-Acetyl-D-glucosamine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02164 and CCNA_02165 are separated by 62 nucleotides CCNA_02165 and CCNA_02166 overlap by 4 nucleotides CCNA_02166 and CCNA_02167 are separated by 43 nucleotides
CCNA_02164: CCNA_02164 - glutamate dehydrogenase/leucine dehydrogenase, at 2,318,142 to 2,319,203
_02164
CCNA_02165: CCNA_02165 - lysophospholipase, at 2,319,266 to 2,320,324
_02165
CCNA_02166: CCNA_02166 - uracil DNA glycosylase superfamily protein, at 2,320,321 to 2,320,905
_02166
CCNA_02167: CCNA_02167 - glutathione S-transferase, at 2,320,949 to 2,321,581
_02167
Position (kb)
2319
2320
2321 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2318.313 kb on + strand, within CCNA_02164 at 2318.321 kb on - strand, within CCNA_02164 at 2318.580 kb on - strand, within CCNA_02164 at 2318.592 kb on + strand, within CCNA_02164 at 2318.602 kb on + strand, within CCNA_02164 at 2318.615 kb on - strand, within CCNA_02164 at 2318.697 kb on - strand, within CCNA_02164 at 2318.734 kb on + strand, within CCNA_02164 at 2318.869 kb on + strand, within CCNA_02164 at 2318.919 kb on - strand, within CCNA_02164 at 2319.023 kb on + strand, within CCNA_02164 at 2319.134 kb on - strand at 2319.251 kb on - strand at 2319.281 kb on - strand at 2319.319 kb on + strand at 2319.345 kb on - strand at 2319.389 kb on - strand, within CCNA_02165 at 2319.390 kb on - strand, within CCNA_02165 at 2319.414 kb on - strand, within CCNA_02165 at 2319.434 kb on - strand, within CCNA_02165 at 2319.455 kb on + strand, within CCNA_02165 at 2319.463 kb on + strand, within CCNA_02165 at 2319.463 kb on + strand, within CCNA_02165 at 2319.471 kb on - strand, within CCNA_02165 at 2319.487 kb on + strand, within CCNA_02165 at 2319.493 kb on + strand, within CCNA_02165 at 2319.552 kb on + strand, within CCNA_02165 at 2319.558 kb on + strand, within CCNA_02165 at 2319.560 kb on - strand, within CCNA_02165 at 2319.560 kb on - strand, within CCNA_02165 at 2319.605 kb on + strand, within CCNA_02165 at 2319.605 kb on + strand, within CCNA_02165 at 2319.620 kb on - strand, within CCNA_02165 at 2319.630 kb on - strand at 2319.631 kb on - strand, within CCNA_02165 at 2319.635 kb on + strand, within CCNA_02165 at 2319.635 kb on + strand, within CCNA_02165 at 2319.648 kb on + strand, within CCNA_02165 at 2319.656 kb on - strand, within CCNA_02165 at 2319.656 kb on - strand, within CCNA_02165 at 2319.656 kb on - strand, within CCNA_02165 at 2319.711 kb on + strand, within CCNA_02165 at 2319.712 kb on - strand, within CCNA_02165 at 2319.713 kb on - strand, within CCNA_02165 at 2319.714 kb on - strand, within CCNA_02165 at 2319.714 kb on - strand, within CCNA_02165 at 2319.753 kb on + strand, within CCNA_02165 at 2319.812 kb on + strand, within CCNA_02165 at 2319.812 kb on + strand, within CCNA_02165 at 2319.812 kb on + strand, within CCNA_02165 at 2319.812 kb on + strand, within CCNA_02165 at 2319.820 kb on - strand, within CCNA_02165 at 2319.820 kb on - strand, within CCNA_02165 at 2319.820 kb on - strand, within CCNA_02165 at 2319.820 kb on - strand, within CCNA_02165 at 2319.821 kb on - strand, within CCNA_02165 at 2319.835 kb on + strand, within CCNA_02165 at 2319.867 kb on - strand, within CCNA_02165 at 2319.872 kb on - strand, within CCNA_02165 at 2319.889 kb on - strand, within CCNA_02165 at 2319.915 kb on + strand, within CCNA_02165 at 2319.940 kb on - strand, within CCNA_02165 at 2319.951 kb on + strand, within CCNA_02165 at 2319.951 kb on + strand, within CCNA_02165 at 2319.951 kb on + strand, within CCNA_02165 at 2319.951 kb on + strand, within CCNA_02165 at 2319.951 kb on + strand, within CCNA_02165 at 2319.959 kb on - strand, within CCNA_02165 at 2319.959 kb on - strand, within CCNA_02165 at 2320.005 kb on - strand, within CCNA_02165 at 2320.044 kb on - strand, within CCNA_02165 at 2320.049 kb on + strand, within CCNA_02165 at 2320.089 kb on + strand, within CCNA_02165 at 2320.095 kb on - strand, within CCNA_02165 at 2320.107 kb on - strand, within CCNA_02165 at 2320.142 kb on - strand, within CCNA_02165 at 2320.178 kb on - strand, within CCNA_02165 at 2320.272 kb on + strand at 2320.304 kb on + strand at 2320.304 kb on + strand at 2320.312 kb on - strand at 2320.312 kb on - strand at 2320.344 kb on - strand at 2320.354 kb on - strand at 2320.358 kb on - strand at 2320.361 kb on + strand at 2320.361 kb on + strand at 2320.361 kb on + strand at 2320.368 kb on + strand at 2320.369 kb on - strand at 2320.373 kb on + strand at 2320.406 kb on + strand, within CCNA_02166 at 2320.406 kb on + strand, within CCNA_02166 at 2320.478 kb on + strand, within CCNA_02166 at 2320.486 kb on - strand, within CCNA_02166 at 2320.486 kb on - strand, within CCNA_02166 at 2320.486 kb on - strand, within CCNA_02166 at 2320.508 kb on + strand, within CCNA_02166 at 2320.509 kb on + strand, within CCNA_02166 at 2320.513 kb on + strand, within CCNA_02166 at 2320.513 kb on + strand, within CCNA_02166 at 2320.513 kb on + strand, within CCNA_02166 at 2320.521 kb on - strand, within CCNA_02166 at 2320.521 kb on - strand, within CCNA_02166 at 2320.521 kb on - strand, within CCNA_02166 at 2320.521 kb on - strand, within CCNA_02166 at 2320.545 kb on + strand, within CCNA_02166 at 2320.550 kb on + strand, within CCNA_02166 at 2320.558 kb on - strand, within CCNA_02166 at 2320.558 kb on - strand, within CCNA_02166 at 2320.558 kb on - strand, within CCNA_02166 at 2320.587 kb on + strand, within CCNA_02166 at 2320.590 kb on - strand, within CCNA_02166 at 2320.590 kb on - strand, within CCNA_02166 at 2320.590 kb on - strand, within CCNA_02166 at 2320.595 kb on - strand, within CCNA_02166 at 2320.605 kb on + strand, within CCNA_02166 at 2320.707 kb on - strand, within CCNA_02166 at 2320.730 kb on + strand, within CCNA_02166 at 2320.738 kb on - strand, within CCNA_02166 at 2320.752 kb on + strand, within CCNA_02166 at 2320.760 kb on - strand, within CCNA_02166 at 2320.811 kb on + strand, within CCNA_02166 at 2320.830 kb on + strand, within CCNA_02166 at 2320.917 kb on + strand at 2320.919 kb on - strand at 2320.955 kb on - strand at 2321.000 kb on - strand at 2321.003 kb on + strand at 2321.011 kb on - strand at 2321.011 kb on - strand at 2321.019 kb on + strand, within CCNA_02167 at 2321.025 kb on + strand, within CCNA_02167 at 2321.025 kb on + strand, within CCNA_02167 at 2321.026 kb on - strand, within CCNA_02167 at 2321.027 kb on - strand, within CCNA_02167 at 2321.027 kb on - strand, within CCNA_02167 at 2321.027 kb on - strand, within CCNA_02167 at 2321.033 kb on - strand, within CCNA_02167 at 2321.073 kb on - strand, within CCNA_02167 at 2321.107 kb on + strand, within CCNA_02167 at 2321.107 kb on + strand, within CCNA_02167 at 2321.115 kb on - strand, within CCNA_02167 at 2321.143 kb on + strand, within CCNA_02167 at 2321.157 kb on + strand, within CCNA_02167 at 2321.163 kb on - strand, within CCNA_02167 at 2321.165 kb on - strand, within CCNA_02167 at 2321.245 kb on + strand, within CCNA_02167 at 2321.302 kb on + strand, within CCNA_02167
Per-strain Table
Position Strand Gene LocusTag Fraction N-Acetyl-D-glucosamine (N) remove 2,318,313 + CCNA_02164 0.16 +2.9 2,318,321 - CCNA_02164 0.17 -0.9 2,318,580 - CCNA_02164 0.41 -0.3 2,318,592 + CCNA_02164 0.42 +0.9 2,318,602 + CCNA_02164 0.43 +0.9 2,318,615 - CCNA_02164 0.45 -0.4 2,318,697 - CCNA_02164 0.52 +0.6 2,318,734 + CCNA_02164 0.56 +1.9 2,318,869 + CCNA_02164 0.68 +1.3 2,318,919 - CCNA_02164 0.73 -0.1 2,319,023 + CCNA_02164 0.83 +1.9 2,319,134 - +1.1 2,319,251 - -1.0 2,319,281 - +1.3 2,319,319 + -0.3 2,319,345 - -0.5 2,319,389 - CCNA_02165 0.12 -0.8 2,319,390 - CCNA_02165 0.12 +0.5 2,319,414 - CCNA_02165 0.14 -1.2 2,319,434 - CCNA_02165 0.16 +1.3 2,319,455 + CCNA_02165 0.18 +0.5 2,319,463 + CCNA_02165 0.19 -1.2 2,319,463 + CCNA_02165 0.19 -1.1 2,319,471 - CCNA_02165 0.19 -0.1 2,319,487 + CCNA_02165 0.21 +1.3 2,319,493 + CCNA_02165 0.21 +2.9 2,319,552 + CCNA_02165 0.27 +0.0 2,319,558 + CCNA_02165 0.28 +0.9 2,319,560 - CCNA_02165 0.28 -0.4 2,319,560 - CCNA_02165 0.28 -1.5 2,319,605 + CCNA_02165 0.32 -0.4 2,319,605 + CCNA_02165 0.32 +0.6 2,319,620 - CCNA_02165 0.33 +0.0 2,319,630 - +2.9 2,319,631 - CCNA_02165 0.34 -1.6 2,319,635 + CCNA_02165 0.35 -2.5 2,319,635 + CCNA_02165 0.35 -1.8 2,319,648 + CCNA_02165 0.36 +0.2 2,319,656 - CCNA_02165 0.37 -1.1 2,319,656 - CCNA_02165 0.37 +1.3 2,319,656 - CCNA_02165 0.37 -0.3 2,319,711 + CCNA_02165 0.42 -1.2 2,319,712 - CCNA_02165 0.42 +0.0 2,319,713 - CCNA_02165 0.42 -0.9 2,319,714 - CCNA_02165 0.42 +1.9 2,319,714 - CCNA_02165 0.42 -1.3 2,319,753 + CCNA_02165 0.46 -1.0 2,319,812 + CCNA_02165 0.52 -0.8 2,319,812 + CCNA_02165 0.52 +0.9 2,319,812 + CCNA_02165 0.52 -1.0 2,319,812 + CCNA_02165 0.52 -0.7 2,319,820 - CCNA_02165 0.52 -1.1 2,319,820 - CCNA_02165 0.52 +0.0 2,319,820 - CCNA_02165 0.52 -0.3 2,319,820 - CCNA_02165 0.52 +0.5 2,319,821 - CCNA_02165 0.52 +1.9 2,319,835 + CCNA_02165 0.54 -0.7 2,319,867 - CCNA_02165 0.57 +0.4 2,319,872 - CCNA_02165 0.57 -1.8 2,319,889 - CCNA_02165 0.59 -0.6 2,319,915 + CCNA_02165 0.61 +0.5 2,319,940 - CCNA_02165 0.64 +0.9 2,319,951 + CCNA_02165 0.65 -2.0 2,319,951 + CCNA_02165 0.65 +0.0 2,319,951 + CCNA_02165 0.65 +0.3 2,319,951 + CCNA_02165 0.65 -2.0 2,319,951 + CCNA_02165 0.65 -0.3 2,319,959 - CCNA_02165 0.65 +0.3 2,319,959 - CCNA_02165 0.65 -0.3 2,320,005 - CCNA_02165 0.70 +0.4 2,320,044 - CCNA_02165 0.73 +0.9 2,320,049 + CCNA_02165 0.74 -1.0 2,320,089 + CCNA_02165 0.78 -1.7 2,320,095 - CCNA_02165 0.78 -2.6 2,320,107 - CCNA_02165 0.79 -1.1 2,320,142 - CCNA_02165 0.83 -1.0 2,320,178 - CCNA_02165 0.86 -2.1 2,320,272 + +0.3 2,320,304 + +0.4 2,320,304 + -1.9 2,320,312 - -1.3 2,320,312 - +1.2 2,320,344 - -1.8 2,320,354 - -2.0 2,320,358 - -0.8 2,320,361 + -0.3 2,320,361 + +1.0 2,320,361 + -0.0 2,320,368 + +0.6 2,320,369 - +2.0 2,320,373 + -2.2 2,320,406 + CCNA_02166 0.15 -0.1 2,320,406 + CCNA_02166 0.15 -2.4 2,320,478 + CCNA_02166 0.27 -0.1 2,320,486 - CCNA_02166 0.28 -1.1 2,320,486 - CCNA_02166 0.28 +0.6 2,320,486 - CCNA_02166 0.28 -1.4 2,320,508 + CCNA_02166 0.32 -0.0 2,320,509 + CCNA_02166 0.32 -1.6 2,320,513 + CCNA_02166 0.33 -1.1 2,320,513 + CCNA_02166 0.33 -1.4 2,320,513 + CCNA_02166 0.33 -0.7 2,320,521 - CCNA_02166 0.34 -1.1 2,320,521 - CCNA_02166 0.34 -0.9 2,320,521 - CCNA_02166 0.34 -0.7 2,320,521 - CCNA_02166 0.34 +0.3 2,320,545 + CCNA_02166 0.38 +1.7 2,320,550 + CCNA_02166 0.39 -0.5 2,320,558 - CCNA_02166 0.41 +2.0 2,320,558 - CCNA_02166 0.41 +1.5 2,320,558 - CCNA_02166 0.41 -1.2 2,320,587 + CCNA_02166 0.45 -0.4 2,320,590 - CCNA_02166 0.46 -1.1 2,320,590 - CCNA_02166 0.46 +0.1 2,320,590 - CCNA_02166 0.46 +0.2 2,320,595 - CCNA_02166 0.47 +2.3 2,320,605 + CCNA_02166 0.49 +1.9 2,320,707 - CCNA_02166 0.66 +0.0 2,320,730 + CCNA_02166 0.70 -1.8 2,320,738 - CCNA_02166 0.71 +1.1 2,320,752 + CCNA_02166 0.74 +0.2 2,320,760 - CCNA_02166 0.75 -0.1 2,320,811 + CCNA_02166 0.84 -1.0 2,320,830 + CCNA_02166 0.87 +0.4 2,320,917 + +0.0 2,320,919 - +0.2 2,320,955 - +0.3 2,321,000 - +0.8 2,321,003 + -0.8 2,321,011 - +0.4 2,321,011 - -1.2 2,321,019 + CCNA_02167 0.11 -1.3 2,321,025 + CCNA_02167 0.12 +0.5 2,321,025 + CCNA_02167 0.12 -2.3 2,321,026 - CCNA_02167 0.12 +1.6 2,321,027 - CCNA_02167 0.12 +0.3 2,321,027 - CCNA_02167 0.12 -0.5 2,321,027 - CCNA_02167 0.12 +0.6 2,321,033 - CCNA_02167 0.13 +0.9 2,321,073 - CCNA_02167 0.20 +0.0 2,321,107 + CCNA_02167 0.25 -0.6 2,321,107 + CCNA_02167 0.25 +1.0 2,321,115 - CCNA_02167 0.26 -0.8 2,321,143 + CCNA_02167 0.31 +1.9 2,321,157 + CCNA_02167 0.33 +0.0 2,321,163 - CCNA_02167 0.34 -1.4 2,321,165 - CCNA_02167 0.34 -1.8 2,321,245 + CCNA_02167 0.47 -1.0 2,321,302 + CCNA_02167 0.56 -1.3
Or see this region's nucleotide sequence