Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02063

Experiment: N-Acetyl-D-glucosamine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_02062 and CCNA_02063 are separated by 82 nucleotidesCCNA_02063 and CCNA_02064 are separated by 100 nucleotides CCNA_02062: CCNA_02062 - DNA repair protein recN, at 2,211,778 to 2,213,484 _02062 CCNA_02063: CCNA_02063 - beta-barrel assembly machine (BAM) protein BamD, at 2,213,567 to 2,214,496 _02063 CCNA_02064: CCNA_02064 - UDP-3-O-(3-hydroxymyristoyl) N-acetylglucosamine deacetylase, at 2,214,597 to 2,215,493 _02064 Position (kb) 2213 2214 2215Strain fitness (log2 ratio) -2 -1 0 1 2at 2212.593 kb on - strand, within CCNA_02062at 2212.680 kb on - strand, within CCNA_02062at 2212.780 kb on - strand, within CCNA_02062at 2212.786 kb on + strand, within CCNA_02062at 2212.794 kb on - strand, within CCNA_02062at 2212.794 kb on - strand, within CCNA_02062at 2212.816 kb on - strand, within CCNA_02062at 2212.839 kb on - strand, within CCNA_02062at 2212.851 kb on - strand, within CCNA_02062at 2212.868 kb on - strand, within CCNA_02062at 2212.878 kb on + strand, within CCNA_02062at 2212.878 kb on + strand, within CCNA_02062at 2212.886 kb on - strand, within CCNA_02062at 2212.886 kb on - strand, within CCNA_02062at 2212.959 kb on + strand, within CCNA_02062at 2212.967 kb on - strand, within CCNA_02062at 2212.977 kb on - strand, within CCNA_02062at 2213.062 kb on - strand, within CCNA_02062at 2213.062 kb on - strand, within CCNA_02062at 2213.078 kb on + strand, within CCNA_02062at 2213.078 kb on + strand, within CCNA_02062at 2213.078 kb on - strand, within CCNA_02062at 2213.229 kb on + strand, within CCNA_02062at 2213.304 kb on - strand, within CCNA_02062at 2213.304 kb on - strand, within CCNA_02062at 2213.494 kb on - strandat 2213.521 kb on + strandat 2213.567 kb on + strandat 2213.588 kb on - strandat 2213.594 kb on + strandat 2213.662 kb on - strand, within CCNA_02063at 2213.672 kb on - strand, within CCNA_02063at 2213.679 kb on - strand, within CCNA_02063at 2213.690 kb on - strand, within CCNA_02063at 2213.690 kb on - strand, within CCNA_02063at 2213.771 kb on + strand, within CCNA_02063at 2214.498 kb on - strandat 2214.523 kb on - strandat 2214.523 kb on - strandat 2214.525 kb on + strandat 2214.525 kb on + strandat 2214.533 kb on + strandat 2214.533 kb on - strandat 2214.533 kb on - strandat 2214.533 kb on - strandat 2214.539 kb on - strandat 2214.541 kb on - strandat 2214.541 kb on - strandat 2214.594 kb on + strandat 2214.602 kb on - strandat 2214.643 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction N-Acetyl-D-glucosamine (N)
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2,212,593 - CCNA_02062 0.48 -0.1
2,212,680 - CCNA_02062 0.53 +0.3
2,212,780 - CCNA_02062 0.59 +1.2
2,212,786 + CCNA_02062 0.59 -0.9
2,212,794 - CCNA_02062 0.60 -0.5
2,212,794 - CCNA_02062 0.60 +1.3
2,212,816 - CCNA_02062 0.61 -0.7
2,212,839 - CCNA_02062 0.62 -0.6
2,212,851 - CCNA_02062 0.63 -2.6
2,212,868 - CCNA_02062 0.64 -1.0
2,212,878 + CCNA_02062 0.64 +2.6
2,212,878 + CCNA_02062 0.64 +0.3
2,212,886 - CCNA_02062 0.65 +2.0
2,212,886 - CCNA_02062 0.65 -0.8
2,212,959 + CCNA_02062 0.69 -0.4
2,212,967 - CCNA_02062 0.70 -0.6
2,212,977 - CCNA_02062 0.70 +0.9
2,213,062 - CCNA_02062 0.75 +0.6
2,213,062 - CCNA_02062 0.75 +0.1
2,213,078 + CCNA_02062 0.76 +0.1
2,213,078 + CCNA_02062 0.76 +0.6
2,213,078 - CCNA_02062 0.76 +0.1
2,213,229 + CCNA_02062 0.85 +1.0
2,213,304 - CCNA_02062 0.89 -1.6
2,213,304 - CCNA_02062 0.89 -1.6
2,213,494 - -0.8
2,213,521 + -0.6
2,213,567 + +0.6
2,213,588 - -0.3
2,213,594 + +0.6
2,213,662 - CCNA_02063 0.10 -2.4
2,213,672 - CCNA_02063 0.11 -0.9
2,213,679 - CCNA_02063 0.12 -1.7
2,213,690 - CCNA_02063 0.13 -0.2
2,213,690 - CCNA_02063 0.13 -0.3
2,213,771 + CCNA_02063 0.22 +0.6
2,214,498 - +1.2
2,214,523 - -0.3
2,214,523 - -1.3
2,214,525 + -1.9
2,214,525 + -1.8
2,214,533 + -0.4
2,214,533 - -0.4
2,214,533 - -1.1
2,214,533 - -0.6
2,214,539 - +1.3
2,214,541 - +0.3
2,214,541 - -1.3
2,214,594 + -1.1
2,214,602 - +1.1
2,214,643 - -0.3

Or see this region's nucleotide sequence