Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01142

Experiment: N-Acetyl-D-glucosamine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_01141 and CCNA_01142 are separated by 686 nucleotidesCCNA_01142 and CCNA_01143 are separated by 360 nucleotidesCCNA_01143 and CCNA_01144 are separated by 29 nucleotides CCNA_01141: CCNA_01141 - RecA protein, at 1,245,163 to 1,246,233 _01141 CCNA_01142: CCNA_01142 - hypothetical protein, at 1,246,920 to 1,247,396 _01142 CCNA_01143: CCNA_01143 - endoribonuclease L-PSP, at 1,247,757 to 1,248,239 _01143 CCNA_01144: CCNA_01144 - cytochrome c oxidase polypeptide II, at 1,248,269 to 1,248,661 _01144 Position (kb) 1246 1247 1248Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1245.931 kb on - strand, within CCNA_01141at 1245.998 kb on + strand, within CCNA_01141at 1246.015 kb on + strand, within CCNA_01141at 1246.108 kb on + strand, within CCNA_01141at 1246.203 kb on - strandat 1246.208 kb on + strandat 1246.208 kb on + strandat 1246.218 kb on + strandat 1246.235 kb on - strandat 1246.250 kb on - strandat 1246.295 kb on - strandat 1246.303 kb on + strandat 1246.387 kb on + strandat 1246.387 kb on + strandat 1246.387 kb on + strandat 1246.387 kb on + strandat 1246.387 kb on + strandat 1246.387 kb on + strandat 1246.387 kb on + strandat 1246.387 kb on + strandat 1246.395 kb on - strandat 1246.395 kb on - strandat 1246.395 kb on - strandat 1246.395 kb on - strandat 1246.395 kb on - strandat 1246.395 kb on - strandat 1246.395 kb on - strandat 1246.395 kb on - strandat 1246.406 kb on + strandat 1246.406 kb on + strandat 1246.406 kb on + strandat 1246.414 kb on - strandat 1246.414 kb on - strandat 1246.414 kb on - strandat 1246.414 kb on - strandat 1246.453 kb on + strandat 1246.471 kb on - strandat 1246.498 kb on + strandat 1246.498 kb on + strandat 1246.568 kb on - strandat 1246.583 kb on - strandat 1246.634 kb on + strandat 1246.634 kb on + strandat 1246.642 kb on - strandat 1246.642 kb on - strandat 1246.642 kb on - strandat 1246.644 kb on + strandat 1246.651 kb on + strandat 1246.652 kb on - strandat 1246.683 kb on + strandat 1246.690 kb on - strandat 1246.690 kb on - strandat 1246.696 kb on + strandat 1246.715 kb on - strandat 1246.728 kb on + strandat 1246.728 kb on + strandat 1246.728 kb on + strandat 1246.728 kb on + strandat 1246.728 kb on + strandat 1246.736 kb on - strandat 1246.741 kb on - strandat 1246.750 kb on + strandat 1246.758 kb on - strandat 1246.835 kb on - strandat 1246.971 kb on + strand, within CCNA_01142at 1247.049 kb on + strand, within CCNA_01142at 1247.081 kb on + strand, within CCNA_01142at 1247.089 kb on - strand, within CCNA_01142at 1247.106 kb on + strand, within CCNA_01142at 1247.131 kb on + strand, within CCNA_01142at 1247.137 kb on - strand, within CCNA_01142at 1247.145 kb on + strand, within CCNA_01142at 1247.158 kb on - strand, within CCNA_01142at 1247.158 kb on - strand, within CCNA_01142at 1247.214 kb on - strand, within CCNA_01142at 1247.224 kb on - strand, within CCNA_01142at 1247.228 kb on + strand, within CCNA_01142at 1247.251 kb on + strand, within CCNA_01142at 1247.273 kb on + strand, within CCNA_01142at 1247.281 kb on - strand, within CCNA_01142at 1247.293 kb on + strand, within CCNA_01142at 1247.304 kb on - strand, within CCNA_01142at 1247.335 kb on + strand, within CCNA_01142at 1247.411 kb on + strandat 1247.411 kb on + strandat 1247.418 kb on - strandat 1247.419 kb on - strandat 1247.438 kb on - strandat 1247.440 kb on - strandat 1247.461 kb on - strandat 1247.468 kb on + strandat 1247.476 kb on - strandat 1247.534 kb on - strandat 1247.551 kb on - strandat 1247.563 kb on - strandat 1247.577 kb on + strandat 1247.628 kb on - strandat 1247.667 kb on + strandat 1247.670 kb on + strandat 1247.675 kb on - strandat 1247.780 kb on + strandat 1247.785 kb on + strandat 1247.793 kb on - strandat 1247.793 kb on - strandat 1247.850 kb on - strand, within CCNA_01143at 1247.850 kb on - strand, within CCNA_01143at 1247.853 kb on - strand, within CCNA_01143at 1247.985 kb on + strand, within CCNA_01143at 1247.993 kb on - strand, within CCNA_01143at 1247.993 kb on - strand, within CCNA_01143at 1247.995 kb on + strand, within CCNA_01143at 1247.995 kb on + strand, within CCNA_01143at 1248.028 kb on + strand, within CCNA_01143at 1248.029 kb on - strand, within CCNA_01143at 1248.036 kb on - strand, within CCNA_01143at 1248.087 kb on - strand, within CCNA_01143at 1248.091 kb on - strand, within CCNA_01143at 1248.107 kb on + strand, within CCNA_01143at 1248.138 kb on + strand, within CCNA_01143at 1248.142 kb on - strand, within CCNA_01143at 1248.179 kb on + strand, within CCNA_01143at 1248.195 kb on + strandat 1248.247 kb on + strandat 1248.255 kb on - strandat 1248.255 kb on - strandat 1248.261 kb on - strandat 1248.275 kb on - strandat 1248.275 kb on - strandat 1248.292 kb on + strandat 1248.292 kb on + strandat 1248.292 kb on + strandat 1248.300 kb on - strandat 1248.300 kb on - strandat 1248.376 kb on + strand, within CCNA_01144at 1248.385 kb on - strand, within CCNA_01144at 1248.391 kb on - strand, within CCNA_01144

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Per-strain Table

Position Strand Gene LocusTag Fraction N-Acetyl-D-glucosamine (N)
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1,245,931 - CCNA_01141 0.72 -1.3
1,245,998 + CCNA_01141 0.78 +2.2
1,246,015 + CCNA_01141 0.80 +1.4
1,246,108 + CCNA_01141 0.88 +0.7
1,246,203 - +1.4
1,246,208 + -0.5
1,246,208 + -0.4
1,246,218 + +3.3
1,246,235 - -0.2
1,246,250 - -0.7
1,246,295 - -0.6
1,246,303 + -0.1
1,246,387 + -0.4
1,246,387 + -1.6
1,246,387 + +1.3
1,246,387 + +0.6
1,246,387 + +1.6
1,246,387 + -0.4
1,246,387 + +0.2
1,246,387 + -0.2
1,246,395 - +0.2
1,246,395 - +0.2
1,246,395 - +0.5
1,246,395 - -0.1
1,246,395 - +1.0
1,246,395 - +0.4
1,246,395 - +0.1
1,246,395 - +2.2
1,246,406 + -0.3
1,246,406 + -0.4
1,246,406 + -0.7
1,246,414 - -0.1
1,246,414 - -1.8
1,246,414 - -1.9
1,246,414 - -0.9
1,246,453 + -1.6
1,246,471 - -1.8
1,246,498 + +1.1
1,246,498 + +0.0
1,246,568 - +0.1
1,246,583 - -0.3
1,246,634 + +1.0
1,246,634 + -1.1
1,246,642 - -0.8
1,246,642 - -0.7
1,246,642 - +0.2
1,246,644 + +1.4
1,246,651 + +1.6
1,246,652 - +0.6
1,246,683 + +3.0
1,246,690 - -1.7
1,246,690 - +0.1
1,246,696 + -1.0
1,246,715 - +1.6
1,246,728 + +0.6
1,246,728 + +0.5
1,246,728 + -1.2
1,246,728 + +2.0
1,246,728 + +0.6
1,246,736 - -0.4
1,246,741 - -0.0
1,246,750 + -0.9
1,246,758 - -0.7
1,246,835 - +0.8
1,246,971 + CCNA_01142 0.11 -1.5
1,247,049 + CCNA_01142 0.27 -1.2
1,247,081 + CCNA_01142 0.34 -1.9
1,247,089 - CCNA_01142 0.35 -1.7
1,247,106 + CCNA_01142 0.39 +0.1
1,247,131 + CCNA_01142 0.44 -1.5
1,247,137 - CCNA_01142 0.45 -1.7
1,247,145 + CCNA_01142 0.47 -1.1
1,247,158 - CCNA_01142 0.50 -0.0
1,247,158 - CCNA_01142 0.50 -0.7
1,247,214 - CCNA_01142 0.62 +3.0
1,247,224 - CCNA_01142 0.64 +1.4
1,247,228 + CCNA_01142 0.65 +0.2
1,247,251 + CCNA_01142 0.69 +0.2
1,247,273 + CCNA_01142 0.74 +0.9
1,247,281 - CCNA_01142 0.76 -2.6
1,247,293 + CCNA_01142 0.78 -1.1
1,247,304 - CCNA_01142 0.81 -0.1
1,247,335 + CCNA_01142 0.87 -1.3
1,247,411 + +0.0
1,247,411 + -1.2
1,247,418 - -0.0
1,247,419 - +0.4
1,247,438 - +0.6
1,247,440 - -0.0
1,247,461 - -2.4
1,247,468 + -1.1
1,247,476 - -1.1
1,247,534 - +0.2
1,247,551 - -0.6
1,247,563 - -0.0
1,247,577 + -1.8
1,247,628 - -0.8
1,247,667 + -0.1
1,247,670 + +1.0
1,247,675 - +0.6
1,247,780 + -1.2
1,247,785 + -0.1
1,247,793 - -0.1
1,247,793 - -0.6
1,247,850 - CCNA_01143 0.19 -1.7
1,247,850 - CCNA_01143 0.19 -0.4
1,247,853 - CCNA_01143 0.20 +1.2
1,247,985 + CCNA_01143 0.47 +1.9
1,247,993 - CCNA_01143 0.49 +1.2
1,247,993 - CCNA_01143 0.49 +0.5
1,247,995 + CCNA_01143 0.49 +0.3
1,247,995 + CCNA_01143 0.49 -0.4
1,248,028 + CCNA_01143 0.56 -1.7
1,248,029 - CCNA_01143 0.56 -0.5
1,248,036 - CCNA_01143 0.58 -1.4
1,248,087 - CCNA_01143 0.68 -0.4
1,248,091 - CCNA_01143 0.69 -0.9
1,248,107 + CCNA_01143 0.72 +1.7
1,248,138 + CCNA_01143 0.79 +0.2
1,248,142 - CCNA_01143 0.80 +0.6
1,248,179 + CCNA_01143 0.87 -0.8
1,248,195 + +0.3
1,248,247 + +0.9
1,248,255 - +1.8
1,248,255 - +0.8
1,248,261 - -0.9
1,248,275 - +1.4
1,248,275 - +0.2
1,248,292 + -0.5
1,248,292 + -0.9
1,248,292 + +1.6
1,248,300 - -0.6
1,248,300 - -1.5
1,248,376 + CCNA_01144 0.27 -1.5
1,248,385 - CCNA_01144 0.30 -0.2
1,248,391 - CCNA_01144 0.31 +0.1

Or see this region's nucleotide sequence