Experiment: N-Acetyl-D-glucosamine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01141 and CCNA_01142 are separated by 686 nucleotides CCNA_01142 and CCNA_01143 are separated by 360 nucleotides CCNA_01143 and CCNA_01144 are separated by 29 nucleotides
CCNA_01141: CCNA_01141 - RecA protein, at 1,245,163 to 1,246,233
_01141
CCNA_01142: CCNA_01142 - hypothetical protein, at 1,246,920 to 1,247,396
_01142
CCNA_01143: CCNA_01143 - endoribonuclease L-PSP, at 1,247,757 to 1,248,239
_01143
CCNA_01144: CCNA_01144 - cytochrome c oxidase polypeptide II, at 1,248,269 to 1,248,661
_01144
Position (kb)
1246
1247
1248 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1245.931 kb on - strand, within CCNA_01141 at 1245.998 kb on + strand, within CCNA_01141 at 1246.015 kb on + strand, within CCNA_01141 at 1246.108 kb on + strand, within CCNA_01141 at 1246.203 kb on - strand at 1246.208 kb on + strand at 1246.208 kb on + strand at 1246.218 kb on + strand at 1246.235 kb on - strand at 1246.250 kb on - strand at 1246.295 kb on - strand at 1246.303 kb on + strand at 1246.387 kb on + strand at 1246.387 kb on + strand at 1246.387 kb on + strand at 1246.387 kb on + strand at 1246.387 kb on + strand at 1246.387 kb on + strand at 1246.387 kb on + strand at 1246.387 kb on + strand at 1246.395 kb on - strand at 1246.395 kb on - strand at 1246.395 kb on - strand at 1246.395 kb on - strand at 1246.395 kb on - strand at 1246.395 kb on - strand at 1246.395 kb on - strand at 1246.395 kb on - strand at 1246.406 kb on + strand at 1246.406 kb on + strand at 1246.406 kb on + strand at 1246.414 kb on - strand at 1246.414 kb on - strand at 1246.414 kb on - strand at 1246.414 kb on - strand at 1246.453 kb on + strand at 1246.471 kb on - strand at 1246.498 kb on + strand at 1246.498 kb on + strand at 1246.568 kb on - strand at 1246.583 kb on - strand at 1246.634 kb on + strand at 1246.634 kb on + strand at 1246.642 kb on - strand at 1246.642 kb on - strand at 1246.642 kb on - strand at 1246.644 kb on + strand at 1246.651 kb on + strand at 1246.652 kb on - strand at 1246.683 kb on + strand at 1246.690 kb on - strand at 1246.690 kb on - strand at 1246.696 kb on + strand at 1246.715 kb on - strand at 1246.728 kb on + strand at 1246.728 kb on + strand at 1246.728 kb on + strand at 1246.728 kb on + strand at 1246.728 kb on + strand at 1246.736 kb on - strand at 1246.741 kb on - strand at 1246.750 kb on + strand at 1246.758 kb on - strand at 1246.835 kb on - strand at 1246.971 kb on + strand, within CCNA_01142 at 1247.049 kb on + strand, within CCNA_01142 at 1247.081 kb on + strand, within CCNA_01142 at 1247.089 kb on - strand, within CCNA_01142 at 1247.106 kb on + strand, within CCNA_01142 at 1247.131 kb on + strand, within CCNA_01142 at 1247.137 kb on - strand, within CCNA_01142 at 1247.145 kb on + strand, within CCNA_01142 at 1247.158 kb on - strand, within CCNA_01142 at 1247.158 kb on - strand, within CCNA_01142 at 1247.214 kb on - strand, within CCNA_01142 at 1247.224 kb on - strand, within CCNA_01142 at 1247.228 kb on + strand, within CCNA_01142 at 1247.251 kb on + strand, within CCNA_01142 at 1247.273 kb on + strand, within CCNA_01142 at 1247.281 kb on - strand, within CCNA_01142 at 1247.293 kb on + strand, within CCNA_01142 at 1247.304 kb on - strand, within CCNA_01142 at 1247.335 kb on + strand, within CCNA_01142 at 1247.411 kb on + strand at 1247.411 kb on + strand at 1247.418 kb on - strand at 1247.419 kb on - strand at 1247.438 kb on - strand at 1247.440 kb on - strand at 1247.461 kb on - strand at 1247.468 kb on + strand at 1247.476 kb on - strand at 1247.534 kb on - strand at 1247.551 kb on - strand at 1247.563 kb on - strand at 1247.577 kb on + strand at 1247.628 kb on - strand at 1247.667 kb on + strand at 1247.670 kb on + strand at 1247.675 kb on - strand at 1247.780 kb on + strand at 1247.785 kb on + strand at 1247.793 kb on - strand at 1247.793 kb on - strand at 1247.850 kb on - strand, within CCNA_01143 at 1247.850 kb on - strand, within CCNA_01143 at 1247.853 kb on - strand, within CCNA_01143 at 1247.985 kb on + strand, within CCNA_01143 at 1247.993 kb on - strand, within CCNA_01143 at 1247.993 kb on - strand, within CCNA_01143 at 1247.995 kb on + strand, within CCNA_01143 at 1247.995 kb on + strand, within CCNA_01143 at 1248.028 kb on + strand, within CCNA_01143 at 1248.029 kb on - strand, within CCNA_01143 at 1248.036 kb on - strand, within CCNA_01143 at 1248.087 kb on - strand, within CCNA_01143 at 1248.091 kb on - strand, within CCNA_01143 at 1248.107 kb on + strand, within CCNA_01143 at 1248.138 kb on + strand, within CCNA_01143 at 1248.142 kb on - strand, within CCNA_01143 at 1248.179 kb on + strand, within CCNA_01143 at 1248.195 kb on + strand at 1248.247 kb on + strand at 1248.255 kb on - strand at 1248.255 kb on - strand at 1248.261 kb on - strand at 1248.275 kb on - strand at 1248.275 kb on - strand at 1248.292 kb on + strand at 1248.292 kb on + strand at 1248.292 kb on + strand at 1248.300 kb on - strand at 1248.300 kb on - strand at 1248.376 kb on + strand, within CCNA_01144 at 1248.385 kb on - strand, within CCNA_01144 at 1248.391 kb on - strand, within CCNA_01144
Per-strain Table
Position Strand Gene LocusTag Fraction N-Acetyl-D-glucosamine (N) remove 1,245,931 - CCNA_01141 0.72 -1.3 1,245,998 + CCNA_01141 0.78 +2.2 1,246,015 + CCNA_01141 0.80 +1.4 1,246,108 + CCNA_01141 0.88 +0.7 1,246,203 - +1.4 1,246,208 + -0.5 1,246,208 + -0.4 1,246,218 + +3.3 1,246,235 - -0.2 1,246,250 - -0.7 1,246,295 - -0.6 1,246,303 + -0.1 1,246,387 + -0.4 1,246,387 + -1.6 1,246,387 + +1.3 1,246,387 + +0.6 1,246,387 + +1.6 1,246,387 + -0.4 1,246,387 + +0.2 1,246,387 + -0.2 1,246,395 - +0.2 1,246,395 - +0.2 1,246,395 - +0.5 1,246,395 - -0.1 1,246,395 - +1.0 1,246,395 - +0.4 1,246,395 - +0.1 1,246,395 - +2.2 1,246,406 + -0.3 1,246,406 + -0.4 1,246,406 + -0.7 1,246,414 - -0.1 1,246,414 - -1.8 1,246,414 - -1.9 1,246,414 - -0.9 1,246,453 + -1.6 1,246,471 - -1.8 1,246,498 + +1.1 1,246,498 + +0.0 1,246,568 - +0.1 1,246,583 - -0.3 1,246,634 + +1.0 1,246,634 + -1.1 1,246,642 - -0.8 1,246,642 - -0.7 1,246,642 - +0.2 1,246,644 + +1.4 1,246,651 + +1.6 1,246,652 - +0.6 1,246,683 + +3.0 1,246,690 - -1.7 1,246,690 - +0.1 1,246,696 + -1.0 1,246,715 - +1.6 1,246,728 + +0.6 1,246,728 + +0.5 1,246,728 + -1.2 1,246,728 + +2.0 1,246,728 + +0.6 1,246,736 - -0.4 1,246,741 - -0.0 1,246,750 + -0.9 1,246,758 - -0.7 1,246,835 - +0.8 1,246,971 + CCNA_01142 0.11 -1.5 1,247,049 + CCNA_01142 0.27 -1.2 1,247,081 + CCNA_01142 0.34 -1.9 1,247,089 - CCNA_01142 0.35 -1.7 1,247,106 + CCNA_01142 0.39 +0.1 1,247,131 + CCNA_01142 0.44 -1.5 1,247,137 - CCNA_01142 0.45 -1.7 1,247,145 + CCNA_01142 0.47 -1.1 1,247,158 - CCNA_01142 0.50 -0.0 1,247,158 - CCNA_01142 0.50 -0.7 1,247,214 - CCNA_01142 0.62 +3.0 1,247,224 - CCNA_01142 0.64 +1.4 1,247,228 + CCNA_01142 0.65 +0.2 1,247,251 + CCNA_01142 0.69 +0.2 1,247,273 + CCNA_01142 0.74 +0.9 1,247,281 - CCNA_01142 0.76 -2.6 1,247,293 + CCNA_01142 0.78 -1.1 1,247,304 - CCNA_01142 0.81 -0.1 1,247,335 + CCNA_01142 0.87 -1.3 1,247,411 + +0.0 1,247,411 + -1.2 1,247,418 - -0.0 1,247,419 - +0.4 1,247,438 - +0.6 1,247,440 - -0.0 1,247,461 - -2.4 1,247,468 + -1.1 1,247,476 - -1.1 1,247,534 - +0.2 1,247,551 - -0.6 1,247,563 - -0.0 1,247,577 + -1.8 1,247,628 - -0.8 1,247,667 + -0.1 1,247,670 + +1.0 1,247,675 - +0.6 1,247,780 + -1.2 1,247,785 + -0.1 1,247,793 - -0.1 1,247,793 - -0.6 1,247,850 - CCNA_01143 0.19 -1.7 1,247,850 - CCNA_01143 0.19 -0.4 1,247,853 - CCNA_01143 0.20 +1.2 1,247,985 + CCNA_01143 0.47 +1.9 1,247,993 - CCNA_01143 0.49 +1.2 1,247,993 - CCNA_01143 0.49 +0.5 1,247,995 + CCNA_01143 0.49 +0.3 1,247,995 + CCNA_01143 0.49 -0.4 1,248,028 + CCNA_01143 0.56 -1.7 1,248,029 - CCNA_01143 0.56 -0.5 1,248,036 - CCNA_01143 0.58 -1.4 1,248,087 - CCNA_01143 0.68 -0.4 1,248,091 - CCNA_01143 0.69 -0.9 1,248,107 + CCNA_01143 0.72 +1.7 1,248,138 + CCNA_01143 0.79 +0.2 1,248,142 - CCNA_01143 0.80 +0.6 1,248,179 + CCNA_01143 0.87 -0.8 1,248,195 + +0.3 1,248,247 + +0.9 1,248,255 - +1.8 1,248,255 - +0.8 1,248,261 - -0.9 1,248,275 - +1.4 1,248,275 - +0.2 1,248,292 + -0.5 1,248,292 + -0.9 1,248,292 + +1.6 1,248,300 - -0.6 1,248,300 - -1.5 1,248,376 + CCNA_01144 0.27 -1.5 1,248,385 - CCNA_01144 0.30 -0.2 1,248,391 - CCNA_01144 0.31 +0.1
Or see this region's nucleotide sequence