Experiment: N-Acetyl-D-glucosamine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00546 and CCNA_00547 are separated by 294 nucleotides CCNA_00547 and CCNA_00548 are separated by 24 nucleotides CCNA_00548 and CCNA_00549 overlap by 7 nucleotides
CCNA_00546: CCNA_00546 - hypothetical protein, at 564,671 to 565,453
_00546
CCNA_00547: CCNA_00547 - PurR-family transcriptional regulator, at 565,748 to 565,879
_00547
CCNA_00548: CCNA_00548 - transposase, HTH-Tnp1 superfamily, at 565,904 to 566,170
_00548
CCNA_00549: CCNA_00549 - transposase, IS2 family, at 566,164 to 567,090
_00549
Position (kb) 565
566 Strain fitness (log2 ratio) -2
-1
0
1
2 at 565.602 kb on + strand at 565.620 kb on - strand at 565.662 kb on - strand at 565.663 kb on + strand at 565.671 kb on - strand at 565.753 kb on + strand at 565.753 kb on + strand at 565.753 kb on + strand at 565.753 kb on + strand at 565.753 kb on + strand at 565.761 kb on - strand at 565.782 kb on - strand, within CCNA_00547 at 565.810 kb on + strand, within CCNA_00547 at 565.810 kb on + strand, within CCNA_00547 at 565.810 kb on + strand, within CCNA_00547 at 565.810 kb on + strand, within CCNA_00547 at 565.818 kb on - strand, within CCNA_00547 at 565.847 kb on - strand, within CCNA_00547 at 565.881 kb on - strand at 565.881 kb on - strand at 565.881 kb on - strand at 565.881 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction N-Acetyl-D-glucosamine (N) remove 565,602 + -0.9 565,620 - +0.1 565,662 - -0.2 565,663 + -1.5 565,671 - +1.8 565,753 + -1.0 565,753 + -0.1 565,753 + -0.7 565,753 + +0.4 565,753 + -1.6 565,761 - -1.3 565,782 - CCNA_00547 0.26 -1.1 565,810 + CCNA_00547 0.47 +0.5 565,810 + CCNA_00547 0.47 -0.7 565,810 + CCNA_00547 0.47 -0.7 565,810 + CCNA_00547 0.47 +0.4 565,818 - CCNA_00547 0.53 -0.3 565,847 - CCNA_00547 0.75 -1.9 565,881 - +0.0 565,881 - -0.7 565,881 - +0.9 565,881 - -1.4
Or see this region's nucleotide sequence