Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS25170

Experiment: R2A with D-Cycloserine 0.2 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with D-Cycloserine 0.2 mg/ml
6,127,138	+		CA265_RS25165	0.50	+0.5
6,127,139	-		CA265_RS25165	0.50	+0.5
6,127,139	-		CA265_RS25165	0.50	+1.0
6,127,139	-		CA265_RS25165	0.50	+0.7
6,127,141	+		CA265_RS25165	0.50	+0.0
6,127,168	+		CA265_RS25165	0.52	-0.8
6,127,169	-		CA265_RS25165	0.52	-1.5
6,127,176	-		CA265_RS25165	0.52	+1.0
6,127,257	-		CA265_RS25165	0.57	-0.4
6,127,257	-		CA265_RS25165	0.57	+0.6
6,127,286	+		CA265_RS25165	0.59	+0.7
6,127,287	-		CA265_RS25165	0.59	+1.4
6,127,287	-		CA265_RS25165	0.59	-0.5
6,127,292	+		CA265_RS25165	0.59	+0.1
6,127,292	+		CA265_RS25165	0.59	-1.5
6,127,293	-		CA265_RS25165	0.59	+0.4
6,127,331	+		CA265_RS25165	0.62	+0.9
6,127,334	-		CA265_RS25165	0.62	+0.4
6,127,385	+		CA265_RS25165	0.65	+0.4
6,127,399	+		CA265_RS25165	0.66	+0.3
6,127,400	-		CA265_RS25165	0.66	+1.2
6,127,400	-		CA265_RS25165	0.66	+0.7
6,127,430	+		CA265_RS25165	0.68	+0.1
6,127,430	+		CA265_RS25165	0.68	-0.0
6,127,430	+		CA265_RS25165	0.68	+1.1
6,127,431	-		CA265_RS25165	0.68	-0.2
6,127,444	+		CA265_RS25165	0.69	+2.8
6,127,510	-		CA265_RS25165	0.73	+0.7
6,127,518	+		CA265_RS25165	0.73	+0.5
6,127,519	-		CA265_RS25165	0.73	+0.2
6,127,519	-		CA265_RS25165	0.73	-0.2
6,127,523	-		CA265_RS25165	0.73	-0.1
6,127,548	+		CA265_RS25165	0.75	+0.2
6,127,549	-		CA265_RS25165	0.75	+0.8
6,127,549	-		CA265_RS25165	0.75	+0.7
6,127,636	+		CA265_RS25165	0.80	+0.1
6,127,637	-		CA265_RS25165	0.80	+0.1
6,127,638	+		CA265_RS25165	0.80	+0.2
6,127,638	+		CA265_RS25165	0.80	+0.5
6,127,639	-		CA265_RS25165	0.80	+0.6
6,127,639	-		CA265_RS25165	0.80	+0.3
6,127,639	-		CA265_RS25165	0.80	-0.6
6,127,659	+		CA265_RS25165	0.82	-0.3
6,127,659	+		CA265_RS25165	0.82	+0.9
6,127,800	+				+0.4
6,127,801	-				+0.4
6,127,804	+				+0.7
6,127,804	+				+0.3
6,127,875	-				+0.2
6,127,934	+				+1.0
6,127,972	+				+1.5
6,127,972	+				+1.1
6,128,030	-				-1.9
6,128,755	+				+0.1
6,128,816	-				+0.4
6,128,821	-				+0.9
6,128,880	+				-0.3
6,128,881	-				+0.3
6,128,882	+				+0.9
6,128,887	+				+0.0
6,128,939	+				+0.4
6,128,949	-				+0.7
6,128,972	+				-1.0
6,128,973	-				+0.1
6,129,131	-		CA265_RS25175	0.27	-0.4
6,129,131	-		CA265_RS25175	0.27	-0.2
6,129,147	+		CA265_RS25175	0.29	+0.1
6,129,229	-		CA265_RS25175	0.38	+0.8
6,129,260	-				+1.0
6,129,364	+		CA265_RS25175	0.53	-1.0
6,129,423	+		CA265_RS25175	0.60	-0.8
6,129,423	+		CA265_RS25175	0.60	+0.7
6,129,429	-		CA265_RS25175	0.60	+0.0
6,129,517	+		CA265_RS25175	0.70	+0.3
6,129,599	-		CA265_RS25175	0.79	+0.5
6,129,631	+		CA265_RS25175	0.83	+0.3
6,129,632	-		CA265_RS25175	0.83	+0.0
6,129,677	-		CA265_RS25175	0.88	-0.9