Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS19200

Experiment: R2A with D-Cycloserine 0.2 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with D-Cycloserine 0.2 mg/ml
4,772,116	-		CA265_RS19195	0.27	+1.3
4,772,152	+		CA265_RS19195	0.31	+1.1
4,772,152	+		CA265_RS19195	0.31	+0.6
4,772,172	-		CA265_RS19195	0.33	+1.9
4,772,217	+		CA265_RS19195	0.37	+1.7
4,772,239	-		CA265_RS19195	0.40	+0.4
4,772,248	-		CA265_RS19195	0.40	+0.3
4,772,311	-		CA265_RS19195	0.47	+0.6
4,772,342	+		CA265_RS19195	0.50	+1.0
4,772,378	+		CA265_RS19195	0.54	+0.2
4,772,379	-		CA265_RS19195	0.54	+2.0
4,772,408	+		CA265_RS19195	0.57	+1.8
4,772,517	-		CA265_RS19195	0.68	+1.2
4,772,521	-		CA265_RS19195	0.68	+0.5
4,772,521	-		CA265_RS19195	0.68	+1.2
4,772,550	+		CA265_RS19195	0.71	+2.5
4,772,580	-		CA265_RS19195	0.74	+0.0
4,772,748	-				+0.5
4,772,811	+				+1.3
4,772,820	+				+1.1
4,772,822	+				+0.6
4,772,912	+				+0.1
4,772,920	+				-0.5
4,772,938	+				+1.2
4,772,938	+				-0.1
4,772,962	+				+1.1
4,773,042	+		CA265_RS19200	0.10	+0.7
4,773,042	+		CA265_RS19200	0.10	+0.3
4,773,043	-		CA265_RS19200	0.10	+0.6
4,773,047	+		CA265_RS19200	0.11	+0.4
4,773,063	+		CA265_RS19200	0.12	+0.8
4,773,081	+		CA265_RS19200	0.14	+0.5
4,773,094	+		CA265_RS19200	0.15	-0.9
4,773,095	-		CA265_RS19200	0.15	+0.2
4,773,099	+		CA265_RS19200	0.16	+0.5
4,773,105	+		CA265_RS19200	0.16	+0.2
4,773,125	-		CA265_RS19200	0.18	+0.5
4,773,178	+		CA265_RS19200	0.23	-1.2
4,773,179	-		CA265_RS19200	0.23	+2.1
4,773,179	-		CA265_RS19200	0.23	+0.9
4,773,228	+		CA265_RS19200	0.28	+0.2
4,773,228	+		CA265_RS19200	0.28	+0.1
4,773,233	-		CA265_RS19200	0.28	-0.0
4,773,233	-		CA265_RS19200	0.28	+0.3
4,773,254	-		CA265_RS19200	0.30	+0.4
4,773,254	-		CA265_RS19200	0.30	-0.4
4,773,254	-		CA265_RS19200	0.30	+1.0
4,773,290	+		CA265_RS19200	0.34	+0.0
4,773,305	+		CA265_RS19200	0.35	+0.2
4,773,330	-		CA265_RS19200	0.38	+0.2
4,773,330	-		CA265_RS19200	0.38	+0.2
4,773,362	-		CA265_RS19200	0.41	-0.0
4,773,381	+		CA265_RS19200	0.42	+0.4
4,773,382	-		CA265_RS19200	0.43	+0.2
4,773,534	+		CA265_RS19200	0.57	+0.6
4,773,534	+		CA265_RS19200	0.57	+0.4
4,773,534	+		CA265_RS19200	0.57	+0.3
4,773,534	+		CA265_RS19200	0.57	+0.4
4,773,535	-		CA265_RS19200	0.57	-0.8
4,773,538	-		CA265_RS19200	0.57	+0.2
4,773,540	-		CA265_RS19200	0.58	+0.5
4,773,571	-		CA265_RS19200	0.61	-0.3
4,773,582	+		CA265_RS19200	0.62	+0.6
4,773,582	+		CA265_RS19200	0.62	+0.2
4,773,631	-		CA265_RS19200	0.66	+0.3
4,773,631	-		CA265_RS19200	0.66	+1.2
4,773,657	+		CA265_RS19200	0.69	+1.5
4,773,684	+		CA265_RS19200	0.71	-0.3
4,773,684	+		CA265_RS19200	0.71	-0.2
4,773,745	-		CA265_RS19200	0.77	-0.0
4,773,769	+		CA265_RS19200	0.79	+0.5
4,773,770	-		CA265_RS19200	0.80	+1.9
4,773,775	-		CA265_RS19200	0.80	-0.0
4,773,775	-		CA265_RS19200	0.80	+0.3
4,773,853	-		CA265_RS19200	0.87	+1.8
4,773,878	+		CA265_RS19200	0.90	+0.8
4,773,879	-		CA265_RS19200	0.90	-0.1
4,773,879	-		CA265_RS19200	0.90	-0.0
4,773,892	+				+1.3
4,773,901	-				+0.3
4,773,913	+				+0.6
4,773,919	+				+1.1
4,773,995	+				+2.4
4,773,996	-				-0.4
4,774,000	-				+1.3
4,774,022	-				+0.2
4,774,022	-				+0.5
4,774,041	-				-0.0
4,774,121	-		CA265_RS19205	0.12	-0.2
4,774,126	+		CA265_RS19205	0.13	-0.1
4,774,213	+		CA265_RS19205	0.22	+0.2
4,774,213	+		CA265_RS19205	0.22	+0.0
4,774,214	-		CA265_RS19205	0.22	-0.8
4,774,231	+		CA265_RS19205	0.24	-0.5
4,774,238	+		CA265_RS19205	0.25	-0.3
4,774,254	+		CA265_RS19205	0.26	+0.7
4,774,336	+		CA265_RS19205	0.35	-0.0
4,774,336	+		CA265_RS19205	0.35	+0.7
4,774,419	+		CA265_RS19205	0.44	+0.3
4,774,424	-		CA265_RS19205	0.45	-0.8
4,774,439	+		CA265_RS19205	0.46	+1.6
4,774,483	+		CA265_RS19205	0.51	+0.2
4,774,489	-		CA265_RS19205	0.52	+0.0
4,774,569	+		CA265_RS19205	0.60	-1.2
4,774,570	-		CA265_RS19205	0.60	-0.4
4,774,581	-		CA265_RS19205	0.62	+0.1
4,774,653	+		CA265_RS19205	0.69	+0.3
4,774,654	-		CA265_RS19205	0.69	-1.2
4,774,700	-		CA265_RS19205	0.74	-0.4
4,774,718	-		CA265_RS19205	0.76	-0.2
4,774,720	+		CA265_RS19205	0.76	+0.8
4,774,721	-		CA265_RS19205	0.77	-0.2
4,774,731	-		CA265_RS19205	0.78	+0.0
4,774,844	+		CA265_RS19205	0.90	+0.3
4,774,844	+		CA265_RS19205	0.90	+1.2
4,774,844	+		CA265_RS19205	0.90	+0.5
4,774,945	-				+0.8
4,774,974	-				+2.1