Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS18225

Experiment: R2A with D-Cycloserine 0.2 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with D-Cycloserine 0.2 mg/ml
4,543,501	+		CA265_RS18220	0.40	-0.8
4,543,714	+		CA265_RS18220	0.57	-0.3
4,543,715	-		CA265_RS18220	0.57	-1.0
4,543,753	-		CA265_RS18220	0.60	-0.8
4,543,800	-		CA265_RS18220	0.63	+0.8
4,543,801	-		CA265_RS18220	0.64	+0.6
4,543,814	+		CA265_RS18220	0.65	-1.0
4,543,815	-		CA265_RS18220	0.65	-0.3
4,543,819	+		CA265_RS18220	0.65	-1.2
4,543,820	-		CA265_RS18220	0.65	+0.5
4,543,967	-		CA265_RS18220	0.77	-0.9
4,543,973	+		CA265_RS18220	0.77	+1.5
4,543,974	-		CA265_RS18220	0.77	-0.6
4,543,974	-		CA265_RS18220	0.77	-1.3
4,543,979	-		CA265_RS18220	0.78	+0.3
4,543,979	-		CA265_RS18220	0.78	+0.1
4,543,981	+		CA265_RS18220	0.78	+0.2
4,544,061	-		CA265_RS18220	0.84	+0.1
4,544,119	-		CA265_RS18220	0.89	+0.1
4,544,180	-				-0.5
4,544,195	-				-0.4
4,544,237	-				-0.4
4,544,257	-				-0.5
4,544,257	-				+1.1
4,544,257	-				+0.4
4,544,257	-				-0.0
4,544,257	-				+0.8
4,544,366	+				+0.8
4,544,371	+				+0.8
4,544,372	-				-0.5
4,544,379	+				+0.2
4,544,379	+				+0.0
4,544,380	-				+1.0
4,544,380	-				+0.0
4,544,411	-				-1.3
4,544,413	+				+1.0
4,544,413	+				+1.1
4,544,414	-				+0.7
4,544,415	+				-0.8
4,544,442	+				-2.4
4,544,443	-				-2.3
4,544,490	+		CA265_RS18225	0.10	-0.4
4,544,513	+		CA265_RS18225	0.14	-1.1
4,544,513	+		CA265_RS18225	0.14	-0.1
4,544,535	-		CA265_RS18225	0.17	+1.1
4,544,538	+		CA265_RS18225	0.17	-1.2
4,544,571	+		CA265_RS18225	0.22	-1.8
4,544,643	+		CA265_RS18225	0.33	-1.9
4,544,699	+		CA265_RS18225	0.41	-2.5
4,544,699	+		CA265_RS18225	0.41	-1.6
4,544,699	+		CA265_RS18225	0.41	-2.9
4,544,700	-		CA265_RS18225	0.41	+0.2
4,544,703	-		CA265_RS18225	0.41	+0.0
4,544,802	-		CA265_RS18225	0.56	+1.5
4,544,804	-		CA265_RS18225	0.56	-0.3
4,544,824	+		CA265_RS18225	0.59	-1.8
4,544,868	-		CA265_RS18225	0.65	-2.0
4,544,871	-		CA265_RS18225	0.66	-1.6
4,544,946	+		CA265_RS18225	0.77	-0.3
4,544,957	+		CA265_RS18225	0.78	-1.5
4,544,957	+		CA265_RS18225	0.78	-1.9
4,545,021	-		CA265_RS18225	0.87	-1.7
4,545,021	-		CA265_RS18225	0.87	-0.5
4,545,037	-		CA265_RS18225	0.90	-0.3
4,545,078	+				-0.8
4,545,112	-				+0.8
4,545,120	+				-0.6
4,545,173	+				-3.3
4,545,173	+				-0.4
4,545,194	+				-1.2
4,545,194	+				-2.1
4,545,196	+				-1.6
4,545,196	+				-1.6
4,545,196	+				-2.5
4,545,231	+				-0.1
4,545,323	-				+4.0
4,545,354	+		CA265_RS18230	0.10	-1.5
4,545,475	+		CA265_RS18230	0.17	-3.1
4,545,502	-		CA265_RS18230	0.19	+4.9
4,545,530	+		CA265_RS18230	0.21	-1.5
4,545,540	-		CA265_RS18230	0.21	+4.7
4,545,556	+		CA265_RS18230	0.22	-0.4
4,545,557	-		CA265_RS18230	0.22	+4.3
4,545,623	+		CA265_RS18230	0.26	-1.9
4,545,624	-		CA265_RS18230	0.26	+4.6
4,545,624	-		CA265_RS18230	0.26	+4.2
4,545,648	-		CA265_RS18230	0.28	+4.0
4,545,671	+		CA265_RS18230	0.29	-0.4
4,545,693	+		CA265_RS18230	0.30	+2.8
4,545,693	+		CA265_RS18230	0.30	-1.3
4,545,726	+		CA265_RS18230	0.32	+0.4
4,545,726	+		CA265_RS18230	0.32	-0.9
4,545,768	-		CA265_RS18230	0.35	+2.9
4,545,872	+		CA265_RS18230	0.41	-2.4
4,545,926	-		CA265_RS18230	0.44	+4.7
4,545,928	-		CA265_RS18230	0.44	+4.7
4,546,013	+		CA265_RS18230	0.49	-0.2
4,546,014	-		CA265_RS18230	0.49	+4.2
4,546,089	+		CA265_RS18230	0.54	-0.2