Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS17190

Experiment: R2A with D-Cycloserine 0.2 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with D-Cycloserine 0.2 mg/ml
4,288,155	-		CA265_RS17180	0.88	-0.3
4,288,171	+		CA265_RS17180	0.89	-0.3
4,288,172	-		CA265_RS17180	0.89	+0.8
4,288,172	-		CA265_RS17180	0.89	-1.0
4,288,190	+				+1.1
4,288,250	+				+0.2
4,288,275	+				-0.2
4,288,287	+				-0.7
4,288,304	-				+1.1
4,288,304	-				+0.5
4,288,314	+				-0.3
4,288,398	+				-1.0
4,288,399	-				-0.5
4,288,458	+				-0.2
4,288,476	+				-0.8
4,288,477	-				+0.6
4,288,546	-				+1.0
4,288,649	+		CA265_RS17185	0.30	-0.1
4,288,654	+		CA265_RS17185	0.30	+0.1
4,288,654	+		CA265_RS17185	0.30	+0.2
4,288,654	+		CA265_RS17185	0.30	-0.8
4,288,655	-		CA265_RS17185	0.31	+0.2
4,288,655	-		CA265_RS17185	0.31	+0.6
4,288,655	-		CA265_RS17185	0.31	+0.5
4,288,655	-		CA265_RS17185	0.31	-0.1
4,288,669	-		CA265_RS17185	0.33	-0.5
4,288,708	-		CA265_RS17185	0.41	+0.5
4,288,866	+		CA265_RS17185	0.71	+0.8
4,288,867	-		CA265_RS17185	0.71	-0.4
4,288,887	+		CA265_RS17185	0.75	+1.6
4,288,897	+		CA265_RS17185	0.77	+0.1
4,288,897	+		CA265_RS17185	0.77	+0.5
4,288,898	-		CA265_RS17185	0.77	-0.3
4,289,033	-				+0.9
4,289,033	-				+0.1
4,289,086	+				+0.7
4,289,094	+				-0.0
4,289,094	+				+0.8
4,289,113	+				+0.7
4,289,114	-				+1.8
4,289,126	+				+0.9
4,289,208	+				-0.4
4,289,260	+				+1.8
4,289,377	+		CA265_RS17190	0.16	+0.8
4,289,378	-		CA265_RS17190	0.16	+1.7
4,289,382	-		CA265_RS17190	0.16	+1.3
4,289,382	-		CA265_RS17190	0.16	+1.8
4,289,400	+		CA265_RS17190	0.17	+1.6
4,289,405	+		CA265_RS17190	0.17	+0.5
4,289,416	-		CA265_RS17190	0.18	+0.7
4,289,416	-		CA265_RS17190	0.18	+1.3
4,289,420	-		CA265_RS17190	0.18	+1.6
4,289,430	-		CA265_RS17190	0.19	+1.3
4,289,446	+		CA265_RS17190	0.19	+0.5
4,289,446	+		CA265_RS17190	0.19	+2.1
4,289,447	-		CA265_RS17190	0.19	+1.8
4,289,493	-		CA265_RS17190	0.22	+2.1
4,289,493	-		CA265_RS17190	0.22	+1.4
4,289,556	+		CA265_RS17190	0.25	+1.2
4,289,556	+		CA265_RS17190	0.25	+1.1
4,289,557	-		CA265_RS17190	0.26	+1.5
4,289,557	-		CA265_RS17190	0.26	+1.3
4,289,576	+		CA265_RS17190	0.27	+1.5
4,289,630	-		CA265_RS17190	0.30	-0.3
4,289,644	-		CA265_RS17190	0.30	+2.2
4,289,659	+		CA265_RS17190	0.31	+0.9
4,289,660	-		CA265_RS17190	0.31	+0.7
4,289,660	-		CA265_RS17190	0.31	+1.1
4,289,730	+		CA265_RS17190	0.35	+0.7
4,289,731	-		CA265_RS17190	0.35	+0.8
4,289,736	+		CA265_RS17190	0.35	+1.6
4,289,782	+		CA265_RS17190	0.38	+1.5
4,289,782	+		CA265_RS17190	0.38	+1.2
4,289,783	-		CA265_RS17190	0.38	+1.6
4,289,783	-		CA265_RS17190	0.38	+1.8
4,289,814	+		CA265_RS17190	0.40	+1.6
4,289,814	+		CA265_RS17190	0.40	+0.2
4,289,815	-		CA265_RS17190	0.40	+0.9
4,289,815	-		CA265_RS17190	0.40	+1.4
4,289,818	+		CA265_RS17190	0.40	+1.5
4,289,905	+		CA265_RS17190	0.45	+0.8
4,289,905	+		CA265_RS17190	0.45	+1.9
4,289,963	-				+3.0
4,289,978	-		CA265_RS17190	0.49	+2.0
4,289,979	+		CA265_RS17190	0.49	+0.9
4,289,979	+		CA265_RS17190	0.49	+1.4
4,289,980	-		CA265_RS17190	0.49	+0.8
4,289,980	-		CA265_RS17190	0.49	+0.9
4,290,119	-		CA265_RS17190	0.56	+1.7
4,290,130	-		CA265_RS17190	0.57	+0.5
4,290,278	+		CA265_RS17190	0.65	+1.0
4,290,316	+		CA265_RS17190	0.67	+1.1
4,290,316	+		CA265_RS17190	0.67	+1.1
4,290,317	-		CA265_RS17190	0.67	+1.1
4,290,338	-		CA265_RS17190	0.68	+1.1
4,290,346	+		CA265_RS17190	0.69	+0.2
4,290,529	-		CA265_RS17190	0.79	+0.6
4,290,566	+		CA265_RS17190	0.81	+0.6
4,290,575	-		CA265_RS17190	0.82	+1.0
4,290,587	-		CA265_RS17190	0.82	+2.5
4,290,619	+		CA265_RS17190	0.84	-0.0
4,290,620	-		CA265_RS17190	0.84	+1.3
4,290,626	-		CA265_RS17190	0.84	+0.6
4,290,661	-		CA265_RS17190	0.86	-0.4
4,290,688	+		CA265_RS17190	0.88	+0.6
4,290,692	-		CA265_RS17190	0.88	+0.9
4,290,693	+		CA265_RS17190	0.88	+2.0
4,290,710	-		CA265_RS17190	0.89	-1.3
4,290,785	-				+0.6
4,290,785	-				+1.5
4,290,851	+				+0.9
4,290,851	+				+0.3
4,290,851	+				+1.4
4,290,858	-				+1.0
4,290,862	+				+2.9
4,290,889	+				+0.9
4,290,910	+				+0.9
4,290,910	+				+1.9
4,290,910	+				+1.4
4,290,939	+				-0.0
4,290,957	+				+0.3
4,290,996	+				+1.0
4,290,996	+				+0.6
4,291,171	+		CA265_RS17195	0.17	-0.2
4,291,179	+		CA265_RS17195	0.17	+0.8
4,291,255	+		CA265_RS17195	0.22	+0.4
4,291,256	-		CA265_RS17195	0.22	-0.8
4,291,287	+		CA265_RS17195	0.24	+0.8
4,291,306	+		CA265_RS17195	0.25	+0.1
4,291,307	-		CA265_RS17195	0.25	-1.4
4,291,307	-		CA265_RS17195	0.25	-1.2
4,291,329	-		CA265_RS17195	0.26	-1.2
4,291,329	-		CA265_RS17195	0.26	-1.3
4,291,447	+		CA265_RS17195	0.34	-0.3
4,291,448	-		CA265_RS17195	0.34	-1.2
4,291,531	-		CA265_RS17195	0.39	+0.4
4,291,531	-		CA265_RS17195	0.39	-1.3
4,291,590	-		CA265_RS17195	0.42	-0.7
4,291,623	+		CA265_RS17195	0.44	+0.2
4,291,623	+		CA265_RS17195	0.44	-0.1
4,291,646	+		CA265_RS17195	0.46	-0.7
4,291,704	-		CA265_RS17195	0.49	-0.9
4,291,704	-		CA265_RS17195	0.49	-0.9
4,291,705	+		CA265_RS17195	0.49	+0.6
4,291,705	+		CA265_RS17195	0.49	+1.7
4,291,731	+		CA265_RS17195	0.51	+1.7
4,291,732	-		CA265_RS17195	0.51	-1.4
4,291,736	-		CA265_RS17195	0.51	-0.7
4,291,755	-		CA265_RS17195	0.52	-1.7
4,291,801	-		CA265_RS17195	0.55	-0.5
4,291,825	-		CA265_RS17195	0.57	-1.0
4,291,857	+		CA265_RS17195	0.59	-0.2
4,291,858	-		CA265_RS17195	0.59	-0.7
4,291,858	-		CA265_RS17195	0.59	-0.4
4,291,860	-		CA265_RS17195	0.59	+0.9