Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS12790

Experiment: R2A with D-Cycloserine 0.2 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with D-Cycloserine 0.2 mg/ml
3,186,538	+				-0.7
3,186,629	+				-0.1
3,186,629	+				+1.3
3,186,647	+		CA265_RS12785	0.12	+0.1
3,186,692	+		CA265_RS12785	0.21	+0.3
3,186,700	+		CA265_RS12785	0.22	-0.5
3,186,700	+		CA265_RS12785	0.22	-0.2
3,186,701	-		CA265_RS12785	0.22	-0.1
3,186,701	-		CA265_RS12785	0.22	+1.0
3,186,701	-		CA265_RS12785	0.22	+0.2
3,186,702	+		CA265_RS12785	0.23	+0.4
3,186,710	+		CA265_RS12785	0.24	+1.8
3,186,711	-		CA265_RS12785	0.24	+0.6
3,186,741	+		CA265_RS12785	0.31	+1.0
3,186,764	-		CA265_RS12785	0.35	-0.7
3,186,767	-		CA265_RS12785	0.36	+0.1
3,186,830	-		CA265_RS12785	0.48	-0.6
3,186,833	-		CA265_RS12785	0.49	+0.4
3,186,833	-		CA265_RS12785	0.49	+0.2
3,186,833	-		CA265_RS12785	0.49	-0.0
3,186,842	+		CA265_RS12785	0.51	+0.4
3,186,964	-		CA265_RS12785	0.75	-1.0
3,186,966	+		CA265_RS12785	0.76	+0.0
3,186,966	+		CA265_RS12785	0.76	-0.5
3,186,994	-		CA265_RS12785	0.81	-0.2
3,186,994	-		CA265_RS12785	0.81	+0.3
3,187,057	+				+0.2
3,187,058	-				-0.1
3,187,097	-				+0.1
3,187,097	-				-0.5
3,187,118	+				+1.5
3,187,165	-				+0.6
3,187,169	-				-0.3
3,187,190	-				-1.0
3,187,248	-				+0.6
3,187,272	-				+0.7
3,187,345	+				-0.5
3,187,382	+				+1.0
3,187,385	+				-0.0
3,187,386	-				+0.8
3,187,467	+		CA265_RS12790	0.15	+0.4
3,187,471	-		CA265_RS12790	0.16	+0.3
3,187,522	+		CA265_RS12790	0.24	-0.2
3,187,618	-		CA265_RS12790	0.39	+0.8
3,187,618	-		CA265_RS12790	0.39	-0.1
3,187,657	+		CA265_RS12790	0.45	-0.8
3,187,667	-		CA265_RS12790	0.47	-0.1
3,187,667	-		CA265_RS12790	0.47	+0.3
3,187,679	+		CA265_RS12790	0.49	+1.9
3,187,719	+		CA265_RS12790	0.55	-0.3
3,187,720	-		CA265_RS12790	0.55	+1.1
3,187,724	-		CA265_RS12790	0.56	+0.2
3,187,725	+		CA265_RS12790	0.56	-0.3
3,187,743	-		CA265_RS12790	0.59	+1.1
3,187,752	+		CA265_RS12790	0.60	-0.3
3,187,753	-		CA265_RS12790	0.60	+1.5
3,187,757	-		CA265_RS12790	0.61	+1.0
3,187,758	+		CA265_RS12790	0.61	+1.7
3,187,795	-		CA265_RS12790	0.67	-0.0
3,187,872	-		CA265_RS12790	0.79	+0.7
3,187,902	+		CA265_RS12790	0.84	+0.8
3,187,916	-		CA265_RS12790	0.86	-0.2
3,187,934	-		CA265_RS12790	0.89	-0.1
3,187,966	-				-0.7
3,187,990	+				-0.8
3,187,990	+				+0.2
3,187,990	+				+0.2
3,187,991	-				+1.1
3,187,997	+				+0.5
3,188,019	-				-0.7
3,188,100	+				-0.7
3,188,137	-				+0.7
3,188,137	-				+0.5
3,188,140	+				-0.9
3,188,173	-				+0.2
3,188,337	+		CA265_RS12795	0.23	-0.2
3,188,525	-		CA265_RS12795	0.39	+1.0
3,188,557	+		CA265_RS12795	0.41	-0.1
3,188,558	-		CA265_RS12795	0.42	+0.7
3,188,564	-		CA265_RS12795	0.42	-0.1
3,188,586	+		CA265_RS12795	0.44	-1.3
3,188,612	+		CA265_RS12795	0.46	+0.4
3,188,612	+		CA265_RS12795	0.46	-0.2
3,188,612	+				+0.5
3,188,694	+		CA265_RS12795	0.53	-0.0
3,188,695	-		CA265_RS12795	0.53	+0.1
3,188,698	+		CA265_RS12795	0.53	+0.2
3,188,698	+		CA265_RS12795	0.53	-0.8
3,188,699	-		CA265_RS12795	0.53	+0.5
3,188,699	-		CA265_RS12795	0.53	+2.1
3,188,729	+		CA265_RS12795	0.56	+0.1
3,188,788	-		CA265_RS12795	0.61	+0.6
3,188,937	+		CA265_RS12795	0.73	-0.1
3,188,937	+		CA265_RS12795	0.73	+0.3