Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS09415

Experiment: R2A with D-Cycloserine 0.2 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with D-Cycloserine 0.2 mg/ml
2,332,610	+		CA265_RS09405	0.80	+0.4
2,332,610	+		CA265_RS09405	0.80	+1.2
2,332,611	-		CA265_RS09405	0.80	+0.4
2,332,611	-		CA265_RS09405	0.80	+1.4
2,332,706	-		CA265_RS09405	0.90	+0.4
2,332,708	+		CA265_RS09405	0.90	+0.6
2,332,708	+		CA265_RS09405	0.90	-0.7
2,332,709	-				+1.1
2,332,754	-				+0.1
2,332,796	-				+0.5
2,332,858	+				+1.6
2,332,943	+				+0.5
2,333,135	+				-0.2
2,333,411	+		CA265_RS09410	0.29	+0.3
2,333,418	+		CA265_RS09410	0.32	+0.1
2,333,419	-		CA265_RS09410	0.32	+2.4
2,333,483	+		CA265_RS09410	0.57	-0.2
2,333,495	+		CA265_RS09410	0.62	+0.0
2,333,495	+		CA265_RS09410	0.62	-1.4
2,333,526	-		CA265_RS09410	0.74	+2.3
2,333,555	+		CA265_RS09410	0.85	-0.4
2,333,555	+		CA265_RS09410	0.85	-0.2
2,333,594	+				+0.6
2,333,595	-				+1.7
2,333,605	+				+0.3
2,333,615	+		CA265_RS09415	0.11	-0.4
2,333,642	-		CA265_RS09415	0.24	+3.2
2,333,651	+		CA265_RS09415	0.28	+0.6
2,333,787	+				+0.2
2,333,787	+				+0.0
2,333,788	-				-0.4
2,333,850	+				-1.1
2,333,924	-				-0.1
2,333,967	+				-0.4
2,334,031	+				-0.3
2,334,158	+		CA265_RS09420	0.62	+0.1
2,334,177	-		CA265_RS09420	0.72	-0.2
2,334,180	+		CA265_RS09420	0.73	-0.5
2,334,425	-		CA265_RS09425	0.81	-0.1
2,334,460	+				-0.4
2,334,489	+				+0.4
2,334,496	+				+0.9
2,334,541	-				-0.3
2,334,548	+				+0.0
2,334,587	+				-0.1
2,334,587	+				-0.2
2,334,591	+				-0.5
2,334,723	-				-2.1
2,334,750	+				-0.8
2,334,751	-				-0.3
2,334,754	+				-1.2
2,334,754	+				-0.4
2,334,755	-				+0.0
2,334,755	-				-1.4
2,334,755	-				+0.5
2,334,793	+				-0.3