Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS09395

Experiment: R2A with D-Cycloserine 0.2 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with D-Cycloserine 0.2 mg/ml
2,329,821	+		CA265_RS09385	0.13	+0.4
2,329,821	+		CA265_RS09385	0.13	-1.1
2,329,878	-		CA265_RS09385	0.26	-2.0
2,329,892	-		CA265_RS09385	0.29	-1.6
2,329,915	-		CA265_RS09385	0.34	-1.2
2,329,944	+		CA265_RS09385	0.40	+0.4
2,329,953	+		CA265_RS09385	0.42	+0.2
2,330,036	-		CA265_RS09385	0.61	-1.7
2,330,036	-		CA265_RS09385	0.61	-0.5
2,330,131	+		CA265_RS09385	0.82	-0.3
2,330,135	+		CA265_RS09385	0.83	+0.3
2,330,213	-				-0.5
2,330,225	+				-0.2
2,330,225	+				+1.6
2,330,226	-				-1.5
2,330,235	-				-2.0
2,330,245	+				-0.2
2,330,246	-				-2.0
2,330,251	-				-1.3
2,330,262	-				-1.9
2,330,285	+		CA265_RS09390	0.14	-0.9
2,330,347	-		CA265_RS09390	0.26	-3.2
2,330,351	+		CA265_RS09390	0.26	+0.4
2,330,381	+		CA265_RS09390	0.32	+0.3
2,330,423	+		CA265_RS09390	0.40	+0.6
2,330,425	+		CA265_RS09390	0.40	-0.3
2,330,425	+		CA265_RS09390	0.40	+0.4
2,330,425	+		CA265_RS09390	0.40	-0.6
2,330,426	-		CA265_RS09390	0.40	-0.8
2,330,426	-		CA265_RS09390	0.40	-1.4
2,330,426	-		CA265_RS09390	0.40	-2.4
2,330,467	+		CA265_RS09390	0.48	+0.8
2,330,468	-		CA265_RS09390	0.48	-2.9
2,330,514	+		CA265_RS09390	0.57	+0.2
2,330,565	+		CA265_RS09390	0.67	+0.4
2,330,566	-		CA265_RS09390	0.67	-1.1
2,330,644	-		CA265_RS09390	0.82	-1.3
2,330,658	+		CA265_RS09390	0.84	+1.1
2,330,659	-		CA265_RS09390	0.84	-0.5
2,330,735	+				+0.6
2,330,899	+		CA265_RS09395	0.21	+0.3
2,330,899	+		CA265_RS09395	0.21	-1.3
2,330,980	-		CA265_RS09395	0.38	-1.7
2,331,011	+		CA265_RS09395	0.45	+0.2
2,331,015	-		CA265_RS09395	0.46	-0.6
2,331,048	-		CA265_RS09395	0.53	-0.2
2,331,186	-		CA265_RS09395	0.82	+0.2
2,331,235	+				-0.1
2,331,407	-				+2.3
2,331,433	+		CA265_RS09400	0.15	-0.9
2,331,527	-		CA265_RS09400	0.34	+4.3
2,331,579	+		CA265_RS09400	0.45	-0.0
2,331,580	-		CA265_RS09400	0.45	+3.1
2,331,600	+		CA265_RS09400	0.50	+0.2
2,331,600	+		CA265_RS09400	0.50	+0.3
2,331,632	-		CA265_RS09400	0.56	+3.6
2,331,673	+		CA265_RS09400	0.65	-0.5
2,331,801	-				+2.7
2,331,920	-				+4.3
2,331,954	+		CA265_RS09405	0.11	-0.8
2,331,955	-		CA265_RS09405	0.11	+2.6
2,331,963	+		CA265_RS09405	0.12	+0.1
2,331,964	-		CA265_RS09405	0.12	+3.4
2,331,973	+		CA265_RS09405	0.13	+0.1
2,331,974	-		CA265_RS09405	0.13	+4.1
2,332,072	+		CA265_RS09405	0.24	-0.8
2,332,078	+		CA265_RS09405	0.24	+0.1
2,332,082	-		CA265_RS09405	0.25	+2.0
2,332,099	-		CA265_RS09405	0.26	+0.5
2,332,116	+		CA265_RS09405	0.28	+0.2
2,332,145	+		CA265_RS09405	0.31	+0.5
2,332,162	+		CA265_RS09405	0.33	-0.7
2,332,258	+		CA265_RS09405	0.43	+0.1