Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS01910

Experiment: R2A with D-Cycloserine 0.2 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS01905 and CA265_RS01910 are separated by 47 nucleotidesCA265_RS01910 and CA265_RS01915 are separated by 533 nucleotides CA265_RS01905: CA265_RS01905 - hypothetical protein, at 473,844 to 476,279 _RS01905 CA265_RS01910: CA265_RS01910 - hypothetical protein, at 476,327 to 479,257 _RS01910 CA265_RS01915: CA265_RS01915 - SusC/RagA family protein, at 479,791 to 482,955 _RS01915 Position (kb) 476 477 478 479 480Strain fitness (log2 ratio) -3 -2 -1 0 1at 475.376 kb on + strand, within CA265_RS01905at 475.496 kb on + strand, within CA265_RS01905at 475.546 kb on + strand, within CA265_RS01905at 475.547 kb on - strand, within CA265_RS01905at 475.581 kb on - strand, within CA265_RS01905at 475.581 kb on - strand, within CA265_RS01905at 475.581 kb on - strandat 475.583 kb on - strand, within CA265_RS01905at 475.644 kb on + strand, within CA265_RS01905at 475.645 kb on - strand, within CA265_RS01905at 475.685 kb on - strand, within CA265_RS01905at 475.721 kb on - strand, within CA265_RS01905at 475.865 kb on - strand, within CA265_RS01905at 475.865 kb on - strand, within CA265_RS01905at 475.876 kb on + strand, within CA265_RS01905at 475.905 kb on + strand, within CA265_RS01905at 475.910 kb on + strand, within CA265_RS01905at 476.009 kb on + strand, within CA265_RS01905at 476.009 kb on + strand, within CA265_RS01905at 476.012 kb on + strand, within CA265_RS01905at 476.190 kb on - strandat 476.226 kb on - strandat 476.267 kb on + strandat 476.287 kb on + strandat 476.288 kb on - strandat 476.288 kb on - strandat 476.342 kb on - strandat 476.356 kb on + strandat 476.490 kb on + strandat 476.569 kb on + strandat 476.623 kb on + strand, within CA265_RS01910at 476.623 kb on + strand, within CA265_RS01910at 476.624 kb on - strand, within CA265_RS01910at 476.665 kb on + strand, within CA265_RS01910at 476.698 kb on + strand, within CA265_RS01910at 476.772 kb on + strand, within CA265_RS01910at 476.827 kb on + strand, within CA265_RS01910at 476.827 kb on + strand, within CA265_RS01910at 476.827 kb on + strand, within CA265_RS01910at 476.828 kb on - strand, within CA265_RS01910at 476.828 kb on - strand, within CA265_RS01910at 476.850 kb on + strand, within CA265_RS01910at 476.933 kb on - strand, within CA265_RS01910at 476.935 kb on + strand, within CA265_RS01910at 476.935 kb on + strand, within CA265_RS01910at 476.936 kb on - strand, within CA265_RS01910at 476.948 kb on - strand, within CA265_RS01910at 476.973 kb on + strand, within CA265_RS01910at 477.026 kb on - strand, within CA265_RS01910at 477.055 kb on + strand, within CA265_RS01910at 477.077 kb on - strand, within CA265_RS01910at 477.077 kb on - strand, within CA265_RS01910at 477.089 kb on - strand, within CA265_RS01910at 477.123 kb on + strandat 477.124 kb on - strand, within CA265_RS01910at 477.176 kb on - strand, within CA265_RS01910at 477.187 kb on + strand, within CA265_RS01910at 477.187 kb on + strand, within CA265_RS01910at 477.188 kb on - strand, within CA265_RS01910at 477.188 kb on - strand, within CA265_RS01910at 477.206 kb on + strand, within CA265_RS01910at 477.208 kb on + strand, within CA265_RS01910at 477.209 kb on - strand, within CA265_RS01910at 477.209 kb on - strand, within CA265_RS01910at 477.213 kb on + strand, within CA265_RS01910at 477.213 kb on + strand, within CA265_RS01910at 477.214 kb on - strand, within CA265_RS01910at 477.248 kb on - strand, within CA265_RS01910at 477.284 kb on - strand, within CA265_RS01910at 477.419 kb on - strand, within CA265_RS01910at 477.419 kb on - strand, within CA265_RS01910at 477.505 kb on + strand, within CA265_RS01910at 477.505 kb on + strand, within CA265_RS01910at 477.546 kb on + strand, within CA265_RS01910at 477.547 kb on - strand, within CA265_RS01910at 477.547 kb on - strand, within CA265_RS01910at 477.608 kb on + strand, within CA265_RS01910at 477.609 kb on - strand, within CA265_RS01910at 477.609 kb on - strand, within CA265_RS01910at 477.638 kb on - strand, within CA265_RS01910at 477.705 kb on + strand, within CA265_RS01910at 477.705 kb on + strand, within CA265_RS01910at 477.716 kb on + strand, within CA265_RS01910at 477.762 kb on + strand, within CA265_RS01910at 477.821 kb on - strand, within CA265_RS01910at 477.831 kb on + strand, within CA265_RS01910at 477.831 kb on + strand, within CA265_RS01910at 477.832 kb on - strand, within CA265_RS01910at 477.832 kb on - strand, within CA265_RS01910at 478.015 kb on + strand, within CA265_RS01910at 478.039 kb on - strand, within CA265_RS01910at 478.084 kb on + strand, within CA265_RS01910at 478.197 kb on + strand, within CA265_RS01910at 478.198 kb on - strand, within CA265_RS01910at 478.215 kb on + strand, within CA265_RS01910at 478.241 kb on + strand, within CA265_RS01910at 478.241 kb on + strand, within CA265_RS01910at 478.242 kb on - strand, within CA265_RS01910at 478.378 kb on - strand, within CA265_RS01910at 478.452 kb on - strand, within CA265_RS01910at 478.484 kb on + strand, within CA265_RS01910at 478.484 kb on + strand, within CA265_RS01910at 478.485 kb on - strand, within CA265_RS01910at 478.485 kb on - strand, within CA265_RS01910at 478.488 kb on + strand, within CA265_RS01910at 478.488 kb on + strand, within CA265_RS01910at 478.488 kb on + strand, within CA265_RS01910at 478.549 kb on - strand, within CA265_RS01910at 478.809 kb on + strand, within CA265_RS01910at 478.836 kb on + strand, within CA265_RS01910at 478.865 kb on + strand, within CA265_RS01910at 478.874 kb on + strand, within CA265_RS01910at 478.875 kb on - strand, within CA265_RS01910at 478.875 kb on - strand, within CA265_RS01910at 478.875 kb on - strand, within CA265_RS01910at 478.885 kb on + strand, within CA265_RS01910at 478.948 kb on - strand, within CA265_RS01910at 479.033 kb on + strandat 479.055 kb on + strandat 479.056 kb on - strandat 479.056 kb on - strandat 479.087 kb on - strandat 479.087 kb on - strandat 479.186 kb on + strandat 479.227 kb on + strandat 479.228 kb on - strandat 479.228 kb on - strandat 479.228 kb on - strandat 479.248 kb on - strandat 479.420 kb on - strandat 479.439 kb on + strandat 479.439 kb on + strandat 479.676 kb on - strandat 479.696 kb on + strandat 479.697 kb on - strandat 479.748 kb on + strandat 479.763 kb on + strandat 479.848 kb on - strandat 479.902 kb on - strandat 479.902 kb on - strandat 479.907 kb on + strandat 479.926 kb on + strandat 479.926 kb on + strandat 479.986 kb on - strandat 480.043 kb on - strandat 480.156 kb on + strand, within CA265_RS01915at 480.164 kb on + strand, within CA265_RS01915at 480.165 kb on - strand, within CA265_RS01915at 480.165 kb on - strand, within CA265_RS01915at 480.186 kb on - strand, within CA265_RS01915at 480.201 kb on + strand, within CA265_RS01915

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with D-Cycloserine 0.2 mg/ml
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475,376 + CA265_RS01905 0.63 -1.2
475,496 + CA265_RS01905 0.68 -1.4
475,546 + CA265_RS01905 0.70 -1.4
475,547 - CA265_RS01905 0.70 -0.6
475,581 - CA265_RS01905 0.71 -0.2
475,581 - CA265_RS01905 0.71 +0.3
475,581 - -0.1
475,583 - CA265_RS01905 0.71 +0.5
475,644 + CA265_RS01905 0.74 -0.9
475,645 - CA265_RS01905 0.74 -0.4
475,685 - CA265_RS01905 0.76 +0.8
475,721 - CA265_RS01905 0.77 +1.5
475,865 - CA265_RS01905 0.83 +0.4
475,865 - CA265_RS01905 0.83 -0.0
475,876 + CA265_RS01905 0.83 -1.3
475,905 + CA265_RS01905 0.85 -1.1
475,910 + CA265_RS01905 0.85 -1.9
476,009 + CA265_RS01905 0.89 -0.4
476,009 + CA265_RS01905 0.89 -0.4
476,012 + CA265_RS01905 0.89 -1.0
476,190 - +0.0
476,226 - -1.2
476,267 + -2.2
476,287 + -1.9
476,288 - -0.3
476,288 - -0.5
476,342 - +0.4
476,356 + -0.7
476,490 + -0.4
476,569 + -0.7
476,623 + CA265_RS01910 0.10 -2.0
476,623 + CA265_RS01910 0.10 -2.3
476,624 - CA265_RS01910 0.10 +0.5
476,665 + CA265_RS01910 0.12 -2.2
476,698 + CA265_RS01910 0.13 -0.1
476,772 + CA265_RS01910 0.15 -1.4
476,827 + CA265_RS01910 0.17 -0.2
476,827 + CA265_RS01910 0.17 -0.7
476,827 + CA265_RS01910 0.17 -0.2
476,828 - CA265_RS01910 0.17 -1.1
476,828 - CA265_RS01910 0.17 -0.7
476,850 + CA265_RS01910 0.18 -1.6
476,933 - CA265_RS01910 0.21 -0.1
476,935 + CA265_RS01910 0.21 -0.1
476,935 + CA265_RS01910 0.21 -0.7
476,936 - CA265_RS01910 0.21 -0.1
476,948 - CA265_RS01910 0.21 +0.8
476,973 + CA265_RS01910 0.22 -0.7
477,026 - CA265_RS01910 0.24 -0.2
477,055 + CA265_RS01910 0.25 +0.2
477,077 - CA265_RS01910 0.26 -0.2
477,077 - CA265_RS01910 0.26 -0.8
477,089 - CA265_RS01910 0.26 +0.1
477,123 + +0.5
477,124 - CA265_RS01910 0.27 +0.4
477,176 - CA265_RS01910 0.29 -0.7
477,187 + CA265_RS01910 0.29 -0.3
477,187 + CA265_RS01910 0.29 -1.1
477,188 - CA265_RS01910 0.29 +0.6
477,188 - CA265_RS01910 0.29 +0.6
477,206 + CA265_RS01910 0.30 -1.4
477,208 + CA265_RS01910 0.30 -0.7
477,209 - CA265_RS01910 0.30 -0.8
477,209 - CA265_RS01910 0.30 +0.1
477,213 + CA265_RS01910 0.30 +0.1
477,213 + CA265_RS01910 0.30 -0.8
477,214 - CA265_RS01910 0.30 +0.2
477,248 - CA265_RS01910 0.31 -0.3
477,284 - CA265_RS01910 0.33 +0.2
477,419 - CA265_RS01910 0.37 -1.5
477,419 - CA265_RS01910 0.37 +0.3
477,505 + CA265_RS01910 0.40 -1.8
477,505 + CA265_RS01910 0.40 -0.7
477,546 + CA265_RS01910 0.42 +0.2
477,547 - CA265_RS01910 0.42 +1.0
477,547 - CA265_RS01910 0.42 +0.3
477,608 + CA265_RS01910 0.44 -0.0
477,609 - CA265_RS01910 0.44 +0.3
477,609 - CA265_RS01910 0.44 +0.4
477,638 - CA265_RS01910 0.45 -0.1
477,705 + CA265_RS01910 0.47 -0.8
477,705 + CA265_RS01910 0.47 -0.2
477,716 + CA265_RS01910 0.47 -0.4
477,762 + CA265_RS01910 0.49 -1.1
477,821 - CA265_RS01910 0.51 +0.4
477,831 + CA265_RS01910 0.51 -0.8
477,831 + CA265_RS01910 0.51 -0.5
477,832 - CA265_RS01910 0.51 -0.5
477,832 - CA265_RS01910 0.51 -1.5
478,015 + CA265_RS01910 0.58 -1.4
478,039 - CA265_RS01910 0.58 -1.5
478,084 + CA265_RS01910 0.60 -0.1
478,197 + CA265_RS01910 0.64 -2.1
478,198 - CA265_RS01910 0.64 +0.5
478,215 + CA265_RS01910 0.64 -1.7
478,241 + CA265_RS01910 0.65 -1.6
478,241 + CA265_RS01910 0.65 -1.5
478,242 - CA265_RS01910 0.65 +1.2
478,378 - CA265_RS01910 0.70 +0.1
478,452 - CA265_RS01910 0.73 -0.3
478,484 + CA265_RS01910 0.74 -1.5
478,484 + CA265_RS01910 0.74 -2.8
478,485 - CA265_RS01910 0.74 -0.5
478,485 - CA265_RS01910 0.74 -0.1
478,488 + CA265_RS01910 0.74 -0.5
478,488 + CA265_RS01910 0.74 -2.3
478,488 + CA265_RS01910 0.74 -0.9
478,549 - CA265_RS01910 0.76 -0.6
478,809 + CA265_RS01910 0.85 -0.8
478,836 + CA265_RS01910 0.86 -1.3
478,865 + CA265_RS01910 0.87 -2.5
478,874 + CA265_RS01910 0.87 -2.9
478,875 - CA265_RS01910 0.87 -0.5
478,875 - CA265_RS01910 0.87 -0.7
478,875 - CA265_RS01910 0.87 -0.3
478,885 + CA265_RS01910 0.87 -1.8
478,948 - CA265_RS01910 0.89 +0.6
479,033 + -1.6
479,055 + +0.7
479,056 - +0.1
479,056 - -0.0
479,087 - +0.3
479,087 - +0.9
479,186 + +0.1
479,227 + +0.0
479,228 - +0.2
479,228 - +0.4
479,228 - +0.9
479,248 - -0.0
479,420 - -1.0
479,439 + +0.1
479,439 + -1.1
479,676 - +0.0
479,696 + -0.3
479,697 - -0.0
479,748 + +0.1
479,763 + +0.7
479,848 - +0.5
479,902 - -0.3
479,902 - +1.0
479,907 + -0.0
479,926 + -0.3
479,926 + -0.3
479,986 - -0.2
480,043 - +0.2
480,156 + CA265_RS01915 0.12 +0.7
480,164 + CA265_RS01915 0.12 -0.1
480,165 - CA265_RS01915 0.12 -0.3
480,165 - CA265_RS01915 0.12 -2.1
480,186 - CA265_RS01915 0.12 -0.1
480,201 + CA265_RS01915 0.13 +0.8

Or see this region's nucleotide sequence