Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS01455

Experiment: R2A with D-Cycloserine 0.2 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS01450 and CA265_RS01455 are separated by 4 nucleotidesCA265_RS01455 and CA265_RS01460 are separated by 54 nucleotidesCA265_RS01460 and CA265_RS01465 are separated by 338 nucleotides CA265_RS01450: CA265_RS01450 - hypothetical protein, at 368,797 to 371,172 _RS01450 CA265_RS01455: CA265_RS01455 - MFS transporter, at 371,177 to 372,418 _RS01455 CA265_RS01460: CA265_RS01460 - hypothetical protein, at 372,473 to 372,841 _RS01460 CA265_RS01465: CA265_RS01465 - hypothetical protein, at 373,180 to 373,386 _RS01465 Position (kb) 371 372 373Strain fitness (log2 ratio) -2 -1 0 1 2at 370.204 kb on + strand, within CA265_RS01450at 370.204 kb on + strand, within CA265_RS01450at 370.205 kb on - strand, within CA265_RS01450at 370.205 kb on - strand, within CA265_RS01450at 370.249 kb on - strand, within CA265_RS01450at 370.257 kb on + strand, within CA265_RS01450at 370.333 kb on - strand, within CA265_RS01450at 370.333 kb on - strand, within CA265_RS01450at 370.396 kb on - strand, within CA265_RS01450at 370.483 kb on - strand, within CA265_RS01450at 370.483 kb on - strand, within CA265_RS01450at 370.486 kb on - strand, within CA265_RS01450at 370.651 kb on - strand, within CA265_RS01450at 370.767 kb on - strand, within CA265_RS01450at 370.809 kb on + strand, within CA265_RS01450at 370.810 kb on - strand, within CA265_RS01450at 370.839 kb on - strand, within CA265_RS01450at 370.843 kb on + strand, within CA265_RS01450at 370.843 kb on + strand, within CA265_RS01450at 370.917 kb on - strand, within CA265_RS01450at 370.917 kb on - strand, within CA265_RS01450at 371.027 kb on + strandat 371.045 kb on - strandat 371.058 kb on + strandat 371.058 kb on + strandat 371.126 kb on + strandat 371.126 kb on + strandat 371.153 kb on + strandat 371.165 kb on - strandat 371.165 kb on - strandat 371.165 kb on - strandat 371.170 kb on + strandat 371.210 kb on + strandat 371.211 kb on - strandat 371.211 kb on - strandat 371.219 kb on - strandat 371.219 kb on - strandat 371.260 kb on + strandat 371.260 kb on + strandat 371.260 kb on + strandat 371.261 kb on - strandat 371.265 kb on - strandat 371.265 kb on - strandat 371.265 kb on - strandat 371.341 kb on - strand, within CA265_RS01455at 371.354 kb on - strand, within CA265_RS01455at 371.409 kb on + strand, within CA265_RS01455at 371.439 kb on + strand, within CA265_RS01455at 371.440 kb on - strand, within CA265_RS01455at 371.449 kb on + strand, within CA265_RS01455at 371.453 kb on - strand, within CA265_RS01455at 371.507 kb on + strand, within CA265_RS01455at 371.508 kb on - strand, within CA265_RS01455at 371.508 kb on - strand, within CA265_RS01455at 371.566 kb on + strand, within CA265_RS01455at 371.566 kb on + strand, within CA265_RS01455at 371.606 kb on - strand, within CA265_RS01455at 371.606 kb on - strand, within CA265_RS01455at 371.719 kb on - strand, within CA265_RS01455at 371.770 kb on + strand, within CA265_RS01455at 371.824 kb on + strand, within CA265_RS01455at 371.825 kb on - strand, within CA265_RS01455at 371.825 kb on - strand, within CA265_RS01455at 371.835 kb on + strand, within CA265_RS01455at 371.848 kb on + strand, within CA265_RS01455at 371.854 kb on + strand, within CA265_RS01455at 371.928 kb on + strand, within CA265_RS01455at 371.933 kb on - strand, within CA265_RS01455at 371.985 kb on + strand, within CA265_RS01455at 371.985 kb on + strand, within CA265_RS01455at 372.013 kb on - strand, within CA265_RS01455at 372.021 kb on - strand, within CA265_RS01455at 372.023 kb on + strand, within CA265_RS01455at 372.049 kb on - strand, within CA265_RS01455at 372.052 kb on + strand, within CA265_RS01455at 372.053 kb on - strand, within CA265_RS01455at 372.053 kb on - strand, within CA265_RS01455at 372.085 kb on - strand, within CA265_RS01455at 372.085 kb on - strand, within CA265_RS01455at 372.085 kb on - strand, within CA265_RS01455at 372.125 kb on + strand, within CA265_RS01455at 372.125 kb on + strand, within CA265_RS01455at 372.144 kb on + strand, within CA265_RS01455at 372.241 kb on + strand, within CA265_RS01455at 372.246 kb on + strand, within CA265_RS01455at 372.264 kb on + strand, within CA265_RS01455at 372.278 kb on + strand, within CA265_RS01455at 372.300 kb on + strandat 372.322 kb on + strandat 372.323 kb on - strandat 372.427 kb on - strandat 372.552 kb on + strand, within CA265_RS01460at 372.568 kb on + strand, within CA265_RS01460at 372.609 kb on + strand, within CA265_RS01460at 372.651 kb on - strand, within CA265_RS01460at 372.679 kb on + strand, within CA265_RS01460at 372.734 kb on + strand, within CA265_RS01460at 372.735 kb on - strand, within CA265_RS01460at 372.735 kb on - strand, within CA265_RS01460at 372.742 kb on - strand, within CA265_RS01460at 372.742 kb on - strand, within CA265_RS01460at 372.742 kb on - strand, within CA265_RS01460at 372.742 kb on - strand, within CA265_RS01460at 372.779 kb on - strand, within CA265_RS01460at 372.881 kb on - strandat 372.916 kb on - strandat 372.941 kb on + strandat 372.942 kb on - strandat 372.943 kb on + strandat 372.965 kb on + strandat 372.966 kb on - strandat 372.969 kb on - strandat 372.985 kb on - strandat 373.026 kb on - strandat 373.027 kb on + strandat 373.127 kb on - strandat 373.130 kb on + strandat 373.206 kb on + strand, within CA265_RS01465at 373.224 kb on + strand, within CA265_RS01465at 373.225 kb on - strand, within CA265_RS01465at 373.225 kb on - strand, within CA265_RS01465at 373.244 kb on + strand, within CA265_RS01465at 373.246 kb on + strand, within CA265_RS01465at 373.248 kb on + strand, within CA265_RS01465at 373.248 kb on + strand, within CA265_RS01465at 373.322 kb on - strand, within CA265_RS01465at 373.322 kb on - strand, within CA265_RS01465at 373.336 kb on - strand, within CA265_RS01465

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with D-Cycloserine 0.2 mg/ml
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370,204 + CA265_RS01450 0.59 +1.2
370,204 + CA265_RS01450 0.59 +0.5
370,205 - CA265_RS01450 0.59 +0.1
370,205 - CA265_RS01450 0.59 +0.2
370,249 - CA265_RS01450 0.61 +0.9
370,257 + CA265_RS01450 0.61 +0.3
370,333 - CA265_RS01450 0.65 -0.2
370,333 - CA265_RS01450 0.65 -1.4
370,396 - CA265_RS01450 0.67 +0.6
370,483 - CA265_RS01450 0.71 -0.4
370,483 - CA265_RS01450 0.71 -1.3
370,486 - CA265_RS01450 0.71 +1.5
370,651 - CA265_RS01450 0.78 -1.1
370,767 - CA265_RS01450 0.83 +0.0
370,809 + CA265_RS01450 0.85 +0.7
370,810 - CA265_RS01450 0.85 -2.4
370,839 - CA265_RS01450 0.86 +0.4
370,843 + CA265_RS01450 0.86 +0.5
370,843 + CA265_RS01450 0.86 +1.0
370,917 - CA265_RS01450 0.89 -0.6
370,917 - CA265_RS01450 0.89 -0.4
371,027 + +0.7
371,045 - +0.6
371,058 + +1.0
371,058 + +0.4
371,126 + +0.6
371,126 + -0.2
371,153 + -0.4
371,165 - -0.5
371,165 - -0.6
371,165 - -0.3
371,170 + -0.0
371,210 + +0.5
371,211 - +0.5
371,211 - +0.2
371,219 - +0.4
371,219 - -0.4
371,260 + +0.5
371,260 + -1.0
371,260 + -0.1
371,261 - -0.4
371,265 - +1.1
371,265 - -0.4
371,265 - +0.6
371,341 - CA265_RS01455 0.13 -0.1
371,354 - CA265_RS01455 0.14 -1.3
371,409 + CA265_RS01455 0.19 +0.2
371,439 + CA265_RS01455 0.21 +0.7
371,440 - CA265_RS01455 0.21 +0.6
371,449 + CA265_RS01455 0.22 +0.8
371,453 - CA265_RS01455 0.22 +0.3
371,507 + CA265_RS01455 0.27 +0.4
371,508 - CA265_RS01455 0.27 -0.1
371,508 - CA265_RS01455 0.27 +0.2
371,566 + CA265_RS01455 0.31 +1.9
371,566 + CA265_RS01455 0.31 +1.3
371,606 - CA265_RS01455 0.35 -0.5
371,606 - CA265_RS01455 0.35 -0.2
371,719 - CA265_RS01455 0.44 -0.4
371,770 + CA265_RS01455 0.48 -1.3
371,824 + CA265_RS01455 0.52 -0.3
371,825 - CA265_RS01455 0.52 +0.3
371,825 - CA265_RS01455 0.52 -0.1
371,835 + CA265_RS01455 0.53 -1.2
371,848 + CA265_RS01455 0.54 +1.9
371,854 + CA265_RS01455 0.55 +0.6
371,928 + CA265_RS01455 0.60 +0.4
371,933 - CA265_RS01455 0.61 -0.0
371,985 + CA265_RS01455 0.65 -0.2
371,985 + CA265_RS01455 0.65 +0.0
372,013 - CA265_RS01455 0.67 -0.3
372,021 - CA265_RS01455 0.68 +0.1
372,023 + CA265_RS01455 0.68 -0.8
372,049 - CA265_RS01455 0.70 +0.0
372,052 + CA265_RS01455 0.70 +0.8
372,053 - CA265_RS01455 0.71 +0.5
372,053 - CA265_RS01455 0.71 +0.3
372,085 - CA265_RS01455 0.73 +0.7
372,085 - CA265_RS01455 0.73 -0.5
372,085 - CA265_RS01455 0.73 +0.2
372,125 + CA265_RS01455 0.76 -0.3
372,125 + CA265_RS01455 0.76 +0.7
372,144 + CA265_RS01455 0.78 -0.1
372,241 + CA265_RS01455 0.86 -0.4
372,246 + CA265_RS01455 0.86 -0.3
372,264 + CA265_RS01455 0.88 +0.1
372,278 + CA265_RS01455 0.89 -1.7
372,300 + +1.1
372,322 + +0.7
372,323 - +0.2
372,427 - -0.6
372,552 + CA265_RS01460 0.21 -0.3
372,568 + CA265_RS01460 0.26 -0.1
372,609 + CA265_RS01460 0.37 -0.2
372,651 - CA265_RS01460 0.48 -1.1
372,679 + CA265_RS01460 0.56 +0.5
372,734 + CA265_RS01460 0.71 +0.1
372,735 - CA265_RS01460 0.71 -0.8
372,735 - CA265_RS01460 0.71 -1.3
372,742 - CA265_RS01460 0.73 -0.0
372,742 - CA265_RS01460 0.73 -0.8
372,742 - CA265_RS01460 0.73 -1.4
372,742 - CA265_RS01460 0.73 -0.4
372,779 - CA265_RS01460 0.83 +1.0
372,881 - +0.6
372,916 - -0.3
372,941 + -0.9
372,942 - -0.6
372,943 + -0.0
372,965 + +0.4
372,966 - -0.9
372,969 - -0.1
372,985 - -0.2
373,026 - -0.6
373,027 + +0.3
373,127 - -0.2
373,130 + +0.9
373,206 + CA265_RS01465 0.13 +0.0
373,224 + CA265_RS01465 0.21 -0.4
373,225 - CA265_RS01465 0.22 +0.1
373,225 - CA265_RS01465 0.22 +0.2
373,244 + CA265_RS01465 0.31 -0.2
373,246 + CA265_RS01465 0.32 +0.1
373,248 + CA265_RS01465 0.33 -0.2
373,248 + CA265_RS01465 0.33 +0.6
373,322 - CA265_RS01465 0.69 -0.8
373,322 - CA265_RS01465 0.69 +1.0
373,336 - CA265_RS01465 0.75 +0.3

Or see this region's nucleotide sequence