Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS01445

Experiment: R2A with D-Cycloserine 0.2 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS01440 and CA265_RS01445 are separated by 402 nucleotidesCA265_RS01445 and CA265_RS01450 are separated by 177 nucleotides CA265_RS01440: CA265_RS01440 - hypothetical protein, at 365,716 to 366,900 _RS01440 CA265_RS01445: CA265_RS01445 - hypothetical protein, at 367,303 to 368,619 _RS01445 CA265_RS01450: CA265_RS01450 - hypothetical protein, at 368,797 to 371,172 _RS01450 Position (kb) 367 368 369Strain fitness (log2 ratio) -2 -1 0 1 2 3at 366.332 kb on + strand, within CA265_RS01440at 366.332 kb on + strand, within CA265_RS01440at 366.355 kb on - strand, within CA265_RS01440at 366.355 kb on - strand, within CA265_RS01440at 366.405 kb on - strand, within CA265_RS01440at 366.442 kb on - strand, within CA265_RS01440at 366.463 kb on - strand, within CA265_RS01440at 366.566 kb on + strand, within CA265_RS01440at 366.592 kb on + strand, within CA265_RS01440at 366.592 kb on + strand, within CA265_RS01440at 366.593 kb on - strand, within CA265_RS01440at 366.599 kb on + strand, within CA265_RS01440at 366.609 kb on - strand, within CA265_RS01440at 366.642 kb on + strand, within CA265_RS01440at 366.645 kb on + strand, within CA265_RS01440at 366.646 kb on - strand, within CA265_RS01440at 366.646 kb on - strand, within CA265_RS01440at 366.690 kb on + strand, within CA265_RS01440at 366.859 kb on - strandat 366.944 kb on + strandat 367.093 kb on + strandat 367.125 kb on - strandat 367.138 kb on - strandat 367.138 kb on - strandat 367.138 kb on - strandat 367.141 kb on + strandat 367.379 kb on - strandat 367.442 kb on + strand, within CA265_RS01445at 367.445 kb on - strand, within CA265_RS01445at 367.477 kb on - strand, within CA265_RS01445at 367.574 kb on - strand, within CA265_RS01445at 367.588 kb on - strand, within CA265_RS01445at 367.624 kb on + strand, within CA265_RS01445at 367.625 kb on - strand, within CA265_RS01445at 367.625 kb on - strand, within CA265_RS01445at 367.629 kb on - strand, within CA265_RS01445at 367.631 kb on - strand, within CA265_RS01445at 367.632 kb on + strand, within CA265_RS01445at 367.632 kb on + strand, within CA265_RS01445at 367.633 kb on - strand, within CA265_RS01445at 367.714 kb on - strand, within CA265_RS01445at 367.736 kb on + strand, within CA265_RS01445at 367.736 kb on + strand, within CA265_RS01445at 367.737 kb on - strand, within CA265_RS01445at 367.737 kb on - strand, within CA265_RS01445at 367.745 kb on + strand, within CA265_RS01445at 367.745 kb on + strand, within CA265_RS01445at 367.745 kb on + strand, within CA265_RS01445at 367.854 kb on + strand, within CA265_RS01445at 367.865 kb on - strand, within CA265_RS01445at 367.925 kb on - strand, within CA265_RS01445at 367.925 kb on - strand, within CA265_RS01445at 367.925 kb on - strand, within CA265_RS01445at 367.971 kb on - strand, within CA265_RS01445at 368.038 kb on - strand, within CA265_RS01445at 368.052 kb on + strand, within CA265_RS01445at 368.073 kb on + strand, within CA265_RS01445at 368.073 kb on + strand, within CA265_RS01445at 368.074 kb on - strand, within CA265_RS01445at 368.121 kb on + strand, within CA265_RS01445at 368.206 kb on + strand, within CA265_RS01445at 368.223 kb on - strand, within CA265_RS01445at 368.357 kb on - strand, within CA265_RS01445at 368.358 kb on + strand, within CA265_RS01445at 368.443 kb on - strand, within CA265_RS01445at 368.476 kb on + strand, within CA265_RS01445at 368.556 kb on + strandat 368.566 kb on - strandat 368.566 kb on - strandat 368.602 kb on + strandat 368.624 kb on + strandat 368.649 kb on + strandat 368.657 kb on - strandat 368.661 kb on - strandat 368.681 kb on + strandat 368.681 kb on + strandat 368.715 kb on + strandat 368.725 kb on + strandat 368.758 kb on + strandat 368.767 kb on - strandat 368.795 kb on + strandat 368.843 kb on + strandat 368.853 kb on + strandat 368.896 kb on + strandat 369.019 kb on + strandat 369.019 kb on + strandat 369.020 kb on - strandat 369.058 kb on + strand, within CA265_RS01450at 369.059 kb on - strand, within CA265_RS01450at 369.064 kb on - strand, within CA265_RS01450at 369.084 kb on - strand, within CA265_RS01450at 369.144 kb on + strand, within CA265_RS01450at 369.162 kb on + strand, within CA265_RS01450at 369.163 kb on - strand, within CA265_RS01450at 369.278 kb on - strand, within CA265_RS01450at 369.316 kb on - strand, within CA265_RS01450at 369.316 kb on - strand, within CA265_RS01450at 369.408 kb on + strand, within CA265_RS01450at 369.429 kb on + strand, within CA265_RS01450at 369.551 kb on + strand, within CA265_RS01450at 369.589 kb on - strand, within CA265_RS01450

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with D-Cycloserine 0.2 mg/ml
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366,332 + CA265_RS01440 0.52 -2.6
366,332 + CA265_RS01440 0.52 -0.4
366,355 - CA265_RS01440 0.54 -0.5
366,355 - CA265_RS01440 0.54 +0.2
366,405 - CA265_RS01440 0.58 -0.8
366,442 - CA265_RS01440 0.61 -0.7
366,463 - CA265_RS01440 0.63 -0.8
366,566 + CA265_RS01440 0.72 +0.0
366,592 + CA265_RS01440 0.74 -1.5
366,592 + CA265_RS01440 0.74 -0.4
366,593 - CA265_RS01440 0.74 -0.2
366,599 + CA265_RS01440 0.75 +0.0
366,609 - CA265_RS01440 0.75 -0.2
366,642 + CA265_RS01440 0.78 +0.6
366,645 + CA265_RS01440 0.78 +0.3
366,646 - CA265_RS01440 0.78 -0.7
366,646 - CA265_RS01440 0.78 +0.5
366,690 + CA265_RS01440 0.82 -1.7
366,859 - +1.5
366,944 + -0.3
367,093 + +1.4
367,125 - -2.0
367,138 - -1.3
367,138 - -1.3
367,138 - -0.7
367,141 + +0.0
367,379 - -0.1
367,442 + CA265_RS01445 0.11 -0.4
367,445 - CA265_RS01445 0.11 +0.9
367,477 - CA265_RS01445 0.13 -0.2
367,574 - CA265_RS01445 0.21 -0.5
367,588 - CA265_RS01445 0.22 +0.2
367,624 + CA265_RS01445 0.24 -1.7
367,625 - CA265_RS01445 0.24 +0.0
367,625 - CA265_RS01445 0.24 +0.2
367,629 - CA265_RS01445 0.25 -0.2
367,631 - CA265_RS01445 0.25 -0.1
367,632 + CA265_RS01445 0.25 -0.2
367,632 + CA265_RS01445 0.25 +1.9
367,633 - CA265_RS01445 0.25 -0.0
367,714 - CA265_RS01445 0.31 -0.4
367,736 + CA265_RS01445 0.33 +0.5
367,736 + CA265_RS01445 0.33 -0.4
367,737 - CA265_RS01445 0.33 -0.9
367,737 - CA265_RS01445 0.33 -0.2
367,745 + CA265_RS01445 0.34 -0.0
367,745 + CA265_RS01445 0.34 +0.9
367,745 + CA265_RS01445 0.34 +0.5
367,854 + CA265_RS01445 0.42 -0.2
367,865 - CA265_RS01445 0.43 -0.4
367,925 - CA265_RS01445 0.47 +0.8
367,925 - CA265_RS01445 0.47 -0.9
367,925 - CA265_RS01445 0.47 +0.1
367,971 - CA265_RS01445 0.51 +0.5
368,038 - CA265_RS01445 0.56 +0.1
368,052 + CA265_RS01445 0.57 +0.4
368,073 + CA265_RS01445 0.58 -0.1
368,073 + CA265_RS01445 0.58 +0.7
368,074 - CA265_RS01445 0.59 +0.1
368,121 + CA265_RS01445 0.62 +1.0
368,206 + CA265_RS01445 0.69 +1.7
368,223 - CA265_RS01445 0.70 -0.8
368,357 - CA265_RS01445 0.80 +0.4
368,358 + CA265_RS01445 0.80 +1.4
368,443 - CA265_RS01445 0.87 -0.5
368,476 + CA265_RS01445 0.89 +1.0
368,556 + +1.9
368,566 - -0.1
368,566 - -0.1
368,602 + +1.5
368,624 + +2.5
368,649 + +2.7
368,657 - -0.0
368,661 - -0.6
368,681 + +2.4
368,681 + +2.8
368,715 + +2.7
368,725 + +1.4
368,758 + +2.8
368,767 - -0.0
368,795 + +0.7
368,843 + -0.5
368,853 + -0.7
368,896 + -0.4
369,019 + +1.1
369,019 + +0.7
369,020 - +0.1
369,058 + CA265_RS01450 0.11 +0.4
369,059 - CA265_RS01450 0.11 +0.2
369,064 - CA265_RS01450 0.11 +0.1
369,084 - CA265_RS01450 0.12 -0.1
369,144 + CA265_RS01450 0.15 +0.6
369,162 + CA265_RS01450 0.15 +0.2
369,163 - CA265_RS01450 0.15 +0.1
369,278 - CA265_RS01450 0.20 +0.2
369,316 - CA265_RS01450 0.22 -0.3
369,316 - CA265_RS01450 0.22 +1.0
369,408 + CA265_RS01450 0.26 -0.6
369,429 + CA265_RS01450 0.27 +0.2
369,551 + CA265_RS01450 0.32 +0.7
369,589 - CA265_RS01450 0.33 -1.4

Or see this region's nucleotide sequence