Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_2456

Experiment: D-Galactose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_2455 and Ac3H11_2456 are separated by 248 nucleotidesAc3H11_2456 and Ac3H11_2457 are separated by 57 nucleotidesAc3H11_2457 and Ac3H11_2458 are separated by 205 nucleotides Ac3H11_2455 - Membrane-bound lytic murein transglycosylase B precursor (EC 3.2.1.-), at 715,168 to 716,553 _2455 Ac3H11_2456 - ATP-dependent Clp protease ATP-binding subunit ClpA, at 716,802 to 719,150 _2456 Ac3H11_2457 - ATP-dependent Clp protease adaptor protein ClpS, at 719,208 to 719,492 _2457 Ac3H11_2458 - DNA polymerase III alpha subunit (EC 2.7.7.7), at 719,698 to 723,312 _2458 Position (kb) 716 717 718 719 720Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 715.942 kb on + strand, within Ac3H11_2455at 715.943 kb on - strand, within Ac3H11_2455at 716.150 kb on + strand, within Ac3H11_2455at 716.151 kb on - strand, within Ac3H11_2455at 716.151 kb on - strand, within Ac3H11_2455at 716.151 kb on - strand, within Ac3H11_2455at 716.151 kb on - strand, within Ac3H11_2455at 716.151 kb on - strand, within Ac3H11_2455at 716.267 kb on - strand, within Ac3H11_2455at 716.284 kb on + strand, within Ac3H11_2455at 716.285 kb on - strand, within Ac3H11_2455at 716.285 kb on - strand, within Ac3H11_2455at 716.285 kb on - strand, within Ac3H11_2455at 716.285 kb on - strand, within Ac3H11_2455at 716.285 kb on - strand, within Ac3H11_2455at 716.626 kb on + strandat 716.627 kb on - strandat 716.659 kb on - strandat 716.750 kb on + strandat 716.750 kb on + strandat 716.750 kb on + strandat 716.750 kb on + strandat 716.750 kb on + strandat 716.750 kb on + strandat 716.751 kb on - strandat 716.751 kb on - strandat 716.751 kb on - strandat 716.751 kb on - strandat 716.751 kb on - strandat 717.514 kb on + strand, within Ac3H11_2456at 717.515 kb on - strand, within Ac3H11_2456at 717.515 kb on - strand, within Ac3H11_2456at 717.515 kb on - strand, within Ac3H11_2456at 717.562 kb on + strand, within Ac3H11_2456at 717.562 kb on + strand, within Ac3H11_2456at 717.562 kb on + strand, within Ac3H11_2456at 717.563 kb on - strand, within Ac3H11_2456at 717.604 kb on + strand, within Ac3H11_2456at 717.604 kb on + strand, within Ac3H11_2456at 717.604 kb on + strand, within Ac3H11_2456at 717.605 kb on - strand, within Ac3H11_2456at 717.605 kb on - strand, within Ac3H11_2456at 717.605 kb on - strand, within Ac3H11_2456at 717.970 kb on + strand, within Ac3H11_2456at 717.970 kb on + strand, within Ac3H11_2456at 717.970 kb on + strand, within Ac3H11_2456at 717.970 kb on + strand, within Ac3H11_2456at 717.970 kb on + strand, within Ac3H11_2456at 717.971 kb on - strand, within Ac3H11_2456at 717.971 kb on - strand, within Ac3H11_2456at 717.971 kb on - strand, within Ac3H11_2456at 717.971 kb on - strand, within Ac3H11_2456at 717.971 kb on - strand, within Ac3H11_2456at 717.971 kb on - strand, within Ac3H11_2456at 717.971 kb on - strand, within Ac3H11_2456at 717.971 kb on - strand, within Ac3H11_2456at 717.971 kb on - strand, within Ac3H11_2456at 718.015 kb on + strand, within Ac3H11_2456at 718.015 kb on + strand, within Ac3H11_2456at 718.015 kb on + strand, within Ac3H11_2456at 718.016 kb on - strand, within Ac3H11_2456at 718.016 kb on - strand, within Ac3H11_2456at 718.016 kb on - strand, within Ac3H11_2456at 718.016 kb on - strand, within Ac3H11_2456at 718.016 kb on - strand, within Ac3H11_2456at 718.016 kb on - strand, within Ac3H11_2456at 718.016 kb on - strand, within Ac3H11_2456at 718.016 kb on - strand, within Ac3H11_2456at 718.016 kb on - strand, within Ac3H11_2456at 718.016 kb on - strand, within Ac3H11_2456at 718.153 kb on + strand, within Ac3H11_2456at 718.153 kb on + strand, within Ac3H11_2456at 718.153 kb on + strand, within Ac3H11_2456at 718.154 kb on - strand, within Ac3H11_2456at 718.357 kb on + strand, within Ac3H11_2456at 718.357 kb on + strand, within Ac3H11_2456at 718.358 kb on - strand, within Ac3H11_2456at 718.358 kb on - strand, within Ac3H11_2456at 718.358 kb on - strand, within Ac3H11_2456at 718.358 kb on - strand, within Ac3H11_2456at 718.358 kb on - strand, within Ac3H11_2456at 718.386 kb on - strand, within Ac3H11_2456at 718.396 kb on + strand, within Ac3H11_2456at 718.396 kb on + strand, within Ac3H11_2456at 718.396 kb on + strand, within Ac3H11_2456at 718.396 kb on + strand, within Ac3H11_2456at 718.396 kb on + strand, within Ac3H11_2456at 718.396 kb on + strand, within Ac3H11_2456at 718.397 kb on - strand, within Ac3H11_2456at 718.397 kb on - strand, within Ac3H11_2456at 718.397 kb on - strand, within Ac3H11_2456at 718.397 kb on - strand, within Ac3H11_2456at 718.397 kb on - strand, within Ac3H11_2456at 718.555 kb on + strand, within Ac3H11_2456at 718.555 kb on + strand, within Ac3H11_2456at 718.555 kb on + strand, within Ac3H11_2456at 718.555 kb on + strand, within Ac3H11_2456at 718.780 kb on + strand, within Ac3H11_2456at 718.780 kb on + strand, within Ac3H11_2456at 718.780 kb on + strand, within Ac3H11_2456at 718.780 kb on + strand, within Ac3H11_2456at 718.780 kb on + strand, within Ac3H11_2456at 718.780 kb on + strand, within Ac3H11_2456at 718.780 kb on + strand, within Ac3H11_2456at 718.780 kb on + strand, within Ac3H11_2456at 718.781 kb on - strand, within Ac3H11_2456at 718.781 kb on - strand, within Ac3H11_2456at 718.781 kb on - strand, within Ac3H11_2456at 718.781 kb on - strand, within Ac3H11_2456at 718.781 kb on - strand, within Ac3H11_2456at 718.781 kb on - strand, within Ac3H11_2456at 718.781 kb on - strand, within Ac3H11_2456at 718.781 kb on - strand, within Ac3H11_2456at 718.783 kb on + strand, within Ac3H11_2456at 718.783 kb on + strand, within Ac3H11_2456at 718.783 kb on + strand, within Ac3H11_2456at 718.783 kb on + strand, within Ac3H11_2456at 718.783 kb on + strand, within Ac3H11_2456at 718.783 kb on + strand, within Ac3H11_2456at 718.783 kb on + strand, within Ac3H11_2456at 718.783 kb on + strand, within Ac3H11_2456at 718.783 kb on + strand, within Ac3H11_2456at 718.784 kb on - strand, within Ac3H11_2456at 718.784 kb on - strand, within Ac3H11_2456at 718.784 kb on - strand, within Ac3H11_2456at 718.784 kb on - strand, within Ac3H11_2456at 718.784 kb on - strand, within Ac3H11_2456at 718.784 kb on - strand, within Ac3H11_2456at 718.784 kb on - strand, within Ac3H11_2456at 718.784 kb on - strand, within Ac3H11_2456at 718.784 kb on - strand, within Ac3H11_2456at 718.784 kb on - strand, within Ac3H11_2456at 718.784 kb on - strand, within Ac3H11_2456at 718.784 kb on - strand, within Ac3H11_2456at 718.784 kb on - strand, within Ac3H11_2456at 718.784 kb on - strand, within Ac3H11_2456at 718.956 kb on - strandat 718.956 kb on - strandat 719.181 kb on + strandat 719.182 kb on - strandat 719.182 kb on - strandat 719.182 kb on - strandat 719.182 kb on - strandat 719.182 kb on - strandat 719.182 kb on - strandat 719.182 kb on - strandat 719.187 kb on + strandat 719.187 kb on + strandat 719.187 kb on + strandat 719.187 kb on + strandat 719.187 kb on + strandat 719.187 kb on + strandat 719.188 kb on - strandat 719.188 kb on - strandat 719.188 kb on - strandat 719.188 kb on - strandat 719.188 kb on - strandat 719.188 kb on - strandat 719.188 kb on - strandat 719.209 kb on + strandat 719.210 kb on - strandat 719.210 kb on - strandat 719.305 kb on + strand, within Ac3H11_2457at 719.305 kb on + strand, within Ac3H11_2457at 719.305 kb on + strand, within Ac3H11_2457at 719.305 kb on + strand, within Ac3H11_2457at 719.306 kb on - strand, within Ac3H11_2457at 719.306 kb on - strand, within Ac3H11_2457at 719.306 kb on - strand, within Ac3H11_2457at 719.306 kb on - strand, within Ac3H11_2457at 719.306 kb on - strand, within Ac3H11_2457at 719.422 kb on + strand, within Ac3H11_2457at 719.422 kb on + strand, within Ac3H11_2457at 719.422 kb on + strand, within Ac3H11_2457at 719.422 kb on + strand, within Ac3H11_2457at 719.422 kb on + strand, within Ac3H11_2457at 719.422 kb on + strand, within Ac3H11_2457at 719.422 kb on + strand, within Ac3H11_2457at 719.422 kb on + strand, within Ac3H11_2457at 719.422 kb on + strand, within Ac3H11_2457at 719.422 kb on + strand, within Ac3H11_2457at 719.423 kb on - strand, within Ac3H11_2457at 719.423 kb on - strand, within Ac3H11_2457at 719.449 kb on + strand, within Ac3H11_2457at 719.449 kb on + strand, within Ac3H11_2457at 719.449 kb on + strand, within Ac3H11_2457at 719.449 kb on + strand, within Ac3H11_2457at 719.449 kb on + strand, within Ac3H11_2457at 719.449 kb on + strand, within Ac3H11_2457at 719.449 kb on + strand, within Ac3H11_2457at 719.449 kb on + strand, within Ac3H11_2457at 719.449 kb on + strand, within Ac3H11_2457at 719.450 kb on - strand, within Ac3H11_2457at 719.450 kb on - strand, within Ac3H11_2457at 719.450 kb on - strand, within Ac3H11_2457at 719.450 kb on - strand, within Ac3H11_2457at 719.450 kb on - strand, within Ac3H11_2457at 719.450 kb on - strand, within Ac3H11_2457at 719.450 kb on - strand, within Ac3H11_2457at 719.450 kb on - strand, within Ac3H11_2457at 719.525 kb on + strandat 719.579 kb on + strandat 719.579 kb on + strandat 719.579 kb on + strandat 719.579 kb on + strandat 719.580 kb on - strandat 719.580 kb on - strandat 719.580 kb on - strandat 719.580 kb on - strandat 719.699 kb on + strandat 719.699 kb on + strandat 719.699 kb on + strandat 719.700 kb on - strandat 719.700 kb on - strandat 719.700 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Galactose (C)
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715,942 + Ac3H11_2455 0.56 +0.1
715,943 - Ac3H11_2455 0.56 -0.9
716,150 + Ac3H11_2455 0.71 +0.6
716,151 - Ac3H11_2455 0.71 +0.8
716,151 - Ac3H11_2455 0.71 +0.2
716,151 - Ac3H11_2455 0.71 +1.3
716,151 - Ac3H11_2455 0.71 -0.1
716,151 - Ac3H11_2455 0.71 -0.2
716,267 - Ac3H11_2455 0.79 +0.0
716,284 + Ac3H11_2455 0.81 -0.4
716,285 - Ac3H11_2455 0.81 +0.2
716,285 - Ac3H11_2455 0.81 -0.3
716,285 - Ac3H11_2455 0.81 +0.4
716,285 - Ac3H11_2455 0.81 +0.3
716,285 - Ac3H11_2455 0.81 +0.3
716,626 + -0.0
716,627 - -0.5
716,659 - -0.9
716,750 + +1.0
716,750 + +0.3
716,750 + +0.4
716,750 + +0.2
716,750 + -0.5
716,750 + -0.5
716,751 - +0.9
716,751 - -0.3
716,751 - +1.8
716,751 - +0.2
716,751 - -0.4
717,514 + Ac3H11_2456 0.30 -1.4
717,515 - Ac3H11_2456 0.30 -1.2
717,515 - Ac3H11_2456 0.30 -0.5
717,515 - Ac3H11_2456 0.30 -1.6
717,562 + Ac3H11_2456 0.32 -1.4
717,562 + Ac3H11_2456 0.32 -1.9
717,562 + Ac3H11_2456 0.32 +0.9
717,563 - Ac3H11_2456 0.32 -1.7
717,604 + Ac3H11_2456 0.34 -1.6
717,604 + Ac3H11_2456 0.34 -1.1
717,604 + Ac3H11_2456 0.34 -0.7
717,605 - Ac3H11_2456 0.34 +0.7
717,605 - Ac3H11_2456 0.34 -1.6
717,605 - Ac3H11_2456 0.34 +0.9
717,970 + Ac3H11_2456 0.50 -3.0
717,970 + Ac3H11_2456 0.50 -0.1
717,970 + Ac3H11_2456 0.50 -1.7
717,970 + Ac3H11_2456 0.50 -3.2
717,970 + Ac3H11_2456 0.50 +0.3
717,971 - Ac3H11_2456 0.50 -2.6
717,971 - Ac3H11_2456 0.50 -1.8
717,971 - Ac3H11_2456 0.50 -2.4
717,971 - Ac3H11_2456 0.50 +0.0
717,971 - Ac3H11_2456 0.50 -1.9
717,971 - Ac3H11_2456 0.50 -0.9
717,971 - Ac3H11_2456 0.50 -1.3
717,971 - Ac3H11_2456 0.50 -2.4
717,971 - Ac3H11_2456 0.50 -2.5
718,015 + Ac3H11_2456 0.52 +0.6
718,015 + Ac3H11_2456 0.52 -2.7
718,015 + Ac3H11_2456 0.52 -1.9
718,016 - Ac3H11_2456 0.52 -0.8
718,016 - Ac3H11_2456 0.52 -1.4
718,016 - Ac3H11_2456 0.52 -0.9
718,016 - Ac3H11_2456 0.52 -1.1
718,016 - Ac3H11_2456 0.52 -1.0
718,016 - Ac3H11_2456 0.52 -1.4
718,016 - Ac3H11_2456 0.52 -0.7
718,016 - Ac3H11_2456 0.52 -1.8
718,016 - Ac3H11_2456 0.52 -1.3
718,016 - Ac3H11_2456 0.52 -1.4
718,153 + Ac3H11_2456 0.58 -2.3
718,153 + Ac3H11_2456 0.58 -0.7
718,153 + Ac3H11_2456 0.58 -1.4
718,154 - Ac3H11_2456 0.58 -0.1
718,357 + Ac3H11_2456 0.66 -1.4
718,357 + Ac3H11_2456 0.66 -0.1
718,358 - Ac3H11_2456 0.66 -1.4
718,358 - Ac3H11_2456 0.66 -2.1
718,358 - Ac3H11_2456 0.66 -1.7
718,358 - Ac3H11_2456 0.66 -2.4
718,358 - Ac3H11_2456 0.66 -0.3
718,386 - Ac3H11_2456 0.67 -2.0
718,396 + Ac3H11_2456 0.68 -1.0
718,396 + Ac3H11_2456 0.68 -1.3
718,396 + Ac3H11_2456 0.68 -1.5
718,396 + Ac3H11_2456 0.68 -2.1
718,396 + Ac3H11_2456 0.68 -2.5
718,396 + Ac3H11_2456 0.68 -2.6
718,397 - Ac3H11_2456 0.68 -0.6
718,397 - Ac3H11_2456 0.68 -1.6
718,397 - Ac3H11_2456 0.68 -0.9
718,397 - Ac3H11_2456 0.68 -2.4
718,397 - Ac3H11_2456 0.68 -0.1
718,555 + Ac3H11_2456 0.75 -1.3
718,555 + Ac3H11_2456 0.75 -1.3
718,555 + Ac3H11_2456 0.75 -1.1
718,555 + Ac3H11_2456 0.75 -0.7
718,780 + Ac3H11_2456 0.84 -0.1
718,780 + Ac3H11_2456 0.84 -2.3
718,780 + Ac3H11_2456 0.84 -1.4
718,780 + Ac3H11_2456 0.84 +0.1
718,780 + Ac3H11_2456 0.84 +0.2
718,780 + Ac3H11_2456 0.84 -1.7
718,780 + Ac3H11_2456 0.84 -3.5
718,780 + Ac3H11_2456 0.84 -2.3
718,781 - Ac3H11_2456 0.84 -1.1
718,781 - Ac3H11_2456 0.84 -2.4
718,781 - Ac3H11_2456 0.84 -1.2
718,781 - Ac3H11_2456 0.84 -1.8
718,781 - Ac3H11_2456 0.84 -1.1
718,781 - Ac3H11_2456 0.84 -2.6
718,781 - Ac3H11_2456 0.84 -0.8
718,781 - Ac3H11_2456 0.84 -1.9
718,783 + Ac3H11_2456 0.84 -0.7
718,783 + Ac3H11_2456 0.84 -0.4
718,783 + Ac3H11_2456 0.84 -2.3
718,783 + Ac3H11_2456 0.84 -1.9
718,783 + Ac3H11_2456 0.84 -0.1
718,783 + Ac3H11_2456 0.84 -1.4
718,783 + Ac3H11_2456 0.84 -0.7
718,783 + Ac3H11_2456 0.84 +0.9
718,783 + Ac3H11_2456 0.84 +0.9
718,784 - Ac3H11_2456 0.84 -2.8
718,784 - Ac3H11_2456 0.84 -0.1
718,784 - Ac3H11_2456 0.84 +0.9
718,784 - Ac3H11_2456 0.84 -0.1
718,784 - Ac3H11_2456 0.84 -1.7
718,784 - Ac3H11_2456 0.84 -1.9
718,784 - Ac3H11_2456 0.84 +0.2
718,784 - Ac3H11_2456 0.84 -2.3
718,784 - Ac3H11_2456 0.84 -0.1
718,784 - Ac3H11_2456 0.84 -0.8
718,784 - Ac3H11_2456 0.84 -3.3
718,784 - Ac3H11_2456 0.84 -2.0
718,784 - Ac3H11_2456 0.84 -0.7
718,784 - Ac3H11_2456 0.84 -0.7
718,956 - -2.6
718,956 - -1.6
719,181 + -0.8
719,182 - -0.2
719,182 - -1.1
719,182 - -0.8
719,182 - -0.1
719,182 - +0.1
719,182 - -0.5
719,182 - -0.0
719,187 + +0.9
719,187 + +0.4
719,187 + -1.5
719,187 + -2.2
719,187 + -0.6
719,187 + -0.2
719,188 - -0.8
719,188 - +0.2
719,188 - -1.1
719,188 - -0.8
719,188 - -0.2
719,188 - -0.2
719,188 - +0.2
719,209 + -2.0
719,210 - +0.5
719,210 - -0.2
719,305 + Ac3H11_2457 0.34 -0.5
719,305 + Ac3H11_2457 0.34 -0.8
719,305 + Ac3H11_2457 0.34 -0.2
719,305 + Ac3H11_2457 0.34 -0.9
719,306 - Ac3H11_2457 0.34 -0.4
719,306 - Ac3H11_2457 0.34 -0.6
719,306 - Ac3H11_2457 0.34 -0.5
719,306 - Ac3H11_2457 0.34 -0.4
719,306 - Ac3H11_2457 0.34 -1.8
719,422 + Ac3H11_2457 0.75 -0.3
719,422 + Ac3H11_2457 0.75 -0.1
719,422 + Ac3H11_2457 0.75 +0.5
719,422 + Ac3H11_2457 0.75 -0.8
719,422 + Ac3H11_2457 0.75 -1.1
719,422 + Ac3H11_2457 0.75 -1.0
719,422 + Ac3H11_2457 0.75 -0.4
719,422 + Ac3H11_2457 0.75 -1.0
719,422 + Ac3H11_2457 0.75 -0.9
719,422 + Ac3H11_2457 0.75 -2.1
719,423 - Ac3H11_2457 0.75 +0.0
719,423 - Ac3H11_2457 0.75 -1.0
719,449 + Ac3H11_2457 0.85 -1.9
719,449 + Ac3H11_2457 0.85 -2.1
719,449 + Ac3H11_2457 0.85 -2.4
719,449 + Ac3H11_2457 0.85 -1.0
719,449 + Ac3H11_2457 0.85 -1.8
719,449 + Ac3H11_2457 0.85 -0.4
719,449 + Ac3H11_2457 0.85 -0.6
719,449 + Ac3H11_2457 0.85 -0.5
719,449 + Ac3H11_2457 0.85 -0.5
719,450 - Ac3H11_2457 0.85 +0.5
719,450 - Ac3H11_2457 0.85 -0.9
719,450 - Ac3H11_2457 0.85 -1.0
719,450 - Ac3H11_2457 0.85 -0.6
719,450 - Ac3H11_2457 0.85 -1.2
719,450 - Ac3H11_2457 0.85 -0.8
719,450 - Ac3H11_2457 0.85 -0.7
719,450 - Ac3H11_2457 0.85 -0.6
719,525 + +0.1
719,579 + +1.0
719,579 + -0.5
719,579 + -0.4
719,579 + -2.0
719,580 - -0.4
719,580 - -0.2
719,580 - +0.5
719,580 - +0.1
719,699 + -0.5
719,699 + +0.4
719,699 + -0.5
719,700 - -0.4
719,700 - +0.2
719,700 - -0.1

Or see this region's nucleotide sequence