Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_152

Experiment: D-Galactose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_151 and Ac3H11_152 are separated by 36 nucleotidesAc3H11_152 and Ac3H11_153 are separated by 106 nucleotides Ac3H11_151 - Methyl-accepting chemotaxis protein I (serine chemoreceptor protein), at 35,127 to 36,611 _151 Ac3H11_152 - hypothetical protein, at 36,648 to 36,797 _152 Ac3H11_153 - Similar to 5-oxoprolinase (EC 3.5.2.9) and Methylhydantoinases A, B (EC 3.5.2.14), contradiction in experimental data (see Annotation), at 36,904 to 40,548 _153 Position (kb) 36 37Strain fitness (log2 ratio) -1 0 1at 35.899 kb on + strand, within Ac3H11_151at 36.205 kb on + strand, within Ac3H11_151at 36.444 kb on + strand, within Ac3H11_151at 36.444 kb on + strand, within Ac3H11_151at 36.650 kb on - strandat 36.780 kb on - strand, within Ac3H11_152at 36.791 kb on - strandat 37.199 kb on + strandat 37.368 kb on - strand, within Ac3H11_153at 37.604 kb on + strand, within Ac3H11_153at 37.604 kb on + strand, within Ac3H11_153at 37.605 kb on - strand, within Ac3H11_153at 37.605 kb on - strand, within Ac3H11_153at 37.605 kb on - strand, within Ac3H11_153at 37.605 kb on - strand, within Ac3H11_153

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Galactose (C)
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35,899 + Ac3H11_151 0.52 +1.4
36,205 + Ac3H11_151 0.73 -0.3
36,444 + Ac3H11_151 0.89 +0.6
36,444 + Ac3H11_151 0.89 +0.1
36,650 - -0.1
36,780 - Ac3H11_152 0.88 +0.7
36,791 - +1.2
37,199 + -0.1
37,368 - Ac3H11_153 0.13 -1.2
37,604 + Ac3H11_153 0.19 +0.1
37,604 + Ac3H11_153 0.19 -0.1
37,605 - Ac3H11_153 0.19 +0.9
37,605 - Ac3H11_153 0.19 -1.3
37,605 - Ac3H11_153 0.19 +0.2
37,605 - Ac3H11_153 0.19 +0.6

Or see this region's nucleotide sequence