Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS13515

Experiment: pyruvate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS13510 and AZOBR_RS13515 are separated by 130 nucleotidesAZOBR_RS13515 and AZOBR_RS13520 are separated by 8 nucleotides AZOBR_RS13510: AZOBR_RS13510 - threonyl-tRNA synthetase, at 2,866,806 to 2,868,770 _RS13510 AZOBR_RS13515: AZOBR_RS13515 - diguanylate phosphodiesterase, at 2,868,901 to 2,870,136 _RS13515 AZOBR_RS13520: AZOBR_RS13520 - dihydroorotate dehydrogenase, at 2,870,145 to 2,871,218 _RS13520 Position (kb) 2868 2869 2870 2871Strain fitness (log2 ratio) -2 -1 0 1 2at 2868.898 kb on + strandat 2868.899 kb on - strandat 2868.899 kb on - strandat 2868.902 kb on + strandat 2868.902 kb on + strandat 2868.903 kb on - strandat 2868.903 kb on - strandat 2868.903 kb on - strandat 2868.962 kb on + strandat 2868.962 kb on + strandat 2868.963 kb on - strandat 2869.131 kb on - strand, within AZOBR_RS13515at 2869.494 kb on - strand, within AZOBR_RS13515at 2870.252 kb on - strandat 2870.267 kb on - strand, within AZOBR_RS13520at 2870.305 kb on + strand, within AZOBR_RS13520at 2870.372 kb on - strand, within AZOBR_RS13520at 2870.372 kb on - strand, within AZOBR_RS13520at 2870.710 kb on + strand, within AZOBR_RS13520at 2870.749 kb on + strand, within AZOBR_RS13520at 2870.750 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction pyruvate (C)
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2,868,898 + -0.8
2,868,899 - +2.5
2,868,899 - -0.7
2,868,902 + +0.1
2,868,902 + +0.2
2,868,903 - -0.4
2,868,903 - +1.3
2,868,903 - -0.1
2,868,962 + -0.0
2,868,962 + +0.4
2,868,963 - -0.0
2,869,131 - AZOBR_RS13515 0.19 -0.5
2,869,494 - AZOBR_RS13515 0.48 +0.1
2,870,252 - -2.5
2,870,267 - AZOBR_RS13520 0.11 -1.7
2,870,305 + AZOBR_RS13520 0.15 +0.1
2,870,372 - AZOBR_RS13520 0.21 -1.7
2,870,372 - AZOBR_RS13520 0.21 -1.2
2,870,710 + AZOBR_RS13520 0.53 -2.7
2,870,749 + AZOBR_RS13520 0.56 -1.7
2,870,750 - +1.1

Or see this region's nucleotide sequence