Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_28070

Experiment: Cisplatin 0.006 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_28065 and AO353_28070 are separated by 430 nucleotidesAO353_28070 and AO353_28075 are separated by 124 nucleotides AO353_28065: AO353_28065 - hypothetical protein, at 6,118,985 to 6,119,962 _28065 AO353_28070: AO353_28070 - LysR family transcriptional regulator, at 6,120,393 to 6,121,349 _28070 AO353_28075: AO353_28075 - hypothetical protein, at 6,121,474 to 6,122,232 _28075 Position (kb) 6120 6121 6122Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 6119.688 kb on - strand, within AO353_28065at 6119.756 kb on + strand, within AO353_28065at 6119.756 kb on + strand, within AO353_28065at 6119.819 kb on + strand, within AO353_28065at 6119.819 kb on + strand, within AO353_28065at 6119.819 kb on + strand, within AO353_28065at 6119.820 kb on - strand, within AO353_28065at 6119.820 kb on - strand, within AO353_28065at 6119.932 kb on + strandat 6119.932 kb on + strandat 6119.933 kb on - strandat 6119.948 kb on + strandat 6119.980 kb on + strandat 6119.980 kb on + strandat 6119.981 kb on - strandat 6120.038 kb on - strandat 6120.176 kb on + strandat 6120.317 kb on + strandat 6120.317 kb on + strandat 6120.317 kb on + strandat 6120.317 kb on + strandat 6120.317 kb on + strandat 6120.317 kb on + strandat 6120.318 kb on - strandat 6120.318 kb on - strandat 6120.318 kb on - strandat 6120.318 kb on - strandat 6120.318 kb on - strandat 6120.318 kb on - strandat 6120.340 kb on + strandat 6120.565 kb on + strand, within AO353_28070at 6120.565 kb on + strand, within AO353_28070at 6120.565 kb on + strand, within AO353_28070at 6120.565 kb on + strand, within AO353_28070at 6120.565 kb on + strand, within AO353_28070at 6120.566 kb on - strand, within AO353_28070at 6120.566 kb on - strand, within AO353_28070at 6120.600 kb on + strandat 6120.600 kb on + strand, within AO353_28070at 6120.750 kb on + strand, within AO353_28070at 6120.750 kb on + strand, within AO353_28070at 6120.751 kb on - strand, within AO353_28070at 6120.854 kb on - strand, within AO353_28070at 6120.854 kb on - strand, within AO353_28070at 6120.862 kb on + strand, within AO353_28070at 6120.862 kb on + strand, within AO353_28070at 6120.862 kb on + strand, within AO353_28070at 6121.003 kb on + strand, within AO353_28070at 6121.004 kb on - strand, within AO353_28070at 6121.337 kb on + strandat 6121.338 kb on - strandat 6121.338 kb on - strandat 6121.338 kb on - strandat 6121.483 kb on - strandat 6121.560 kb on - strand, within AO353_28075at 6121.560 kb on - strand, within AO353_28075at 6121.560 kb on - strand, within AO353_28075at 6121.813 kb on + strand, within AO353_28075at 6121.813 kb on + strand, within AO353_28075at 6121.813 kb on + strand, within AO353_28075at 6121.813 kb on + strand, within AO353_28075at 6121.813 kb on + strand, within AO353_28075at 6121.814 kb on - strand, within AO353_28075at 6121.814 kb on - strand, within AO353_28075at 6121.814 kb on - strand, within AO353_28075at 6121.814 kb on - strand, within AO353_28075at 6121.814 kb on - strand, within AO353_28075at 6121.916 kb on - strand, within AO353_28075at 6121.916 kb on - strand, within AO353_28075at 6122.077 kb on + strand, within AO353_28075at 6122.215 kb on + strandat 6122.215 kb on + strandat 6122.216 kb on - strandat 6122.269 kb on + strandat 6122.269 kb on + strandat 6122.269 kb on + strandat 6122.269 kb on + strandat 6122.270 kb on - strandat 6122.270 kb on - strandat 6122.270 kb on - strandat 6122.336 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.006 mg/ml
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6,119,688 - AO353_28065 0.72 +1.3
6,119,756 + AO353_28065 0.79 -1.9
6,119,756 + AO353_28065 0.79 +0.0
6,119,819 + AO353_28065 0.85 +1.5
6,119,819 + AO353_28065 0.85 +0.1
6,119,819 + AO353_28065 0.85 -0.2
6,119,820 - AO353_28065 0.85 -2.6
6,119,820 - AO353_28065 0.85 -0.3
6,119,932 + -0.3
6,119,932 + -1.9
6,119,933 - +1.7
6,119,948 + -0.1
6,119,980 + -0.3
6,119,980 + -0.3
6,119,981 - +0.7
6,120,038 - -0.5
6,120,176 + -1.3
6,120,317 + -0.3
6,120,317 + -1.6
6,120,317 + +3.5
6,120,317 + -1.3
6,120,317 + -2.6
6,120,317 + -2.6
6,120,318 - +0.7
6,120,318 - +0.9
6,120,318 - -1.3
6,120,318 - +1.5
6,120,318 - +1.3
6,120,318 - -1.9
6,120,340 + -0.9
6,120,565 + AO353_28070 0.18 -1.9
6,120,565 + AO353_28070 0.18 -0.4
6,120,565 + AO353_28070 0.18 +1.5
6,120,565 + AO353_28070 0.18 +1.9
6,120,565 + AO353_28070 0.18 -2.3
6,120,566 - AO353_28070 0.18 +2.3
6,120,566 - AO353_28070 0.18 -3.6
6,120,600 + -1.3
6,120,600 + AO353_28070 0.22 +1.1
6,120,750 + AO353_28070 0.37 +3.0
6,120,750 + AO353_28070 0.37 -1.9
6,120,751 - AO353_28070 0.37 -0.6
6,120,854 - AO353_28070 0.48 +0.6
6,120,854 - AO353_28070 0.48 +0.5
6,120,862 + AO353_28070 0.49 -2.3
6,120,862 + AO353_28070 0.49 -0.3
6,120,862 + AO353_28070 0.49 +2.3
6,121,003 + AO353_28070 0.64 -1.9
6,121,004 - AO353_28070 0.64 -1.3
6,121,337 + -0.9
6,121,338 - -0.3
6,121,338 - +1.0
6,121,338 - +2.9
6,121,483 - -1.3
6,121,560 - AO353_28075 0.11 +2.7
6,121,560 - AO353_28075 0.11 -1.9
6,121,560 - AO353_28075 0.11 +2.0
6,121,813 + AO353_28075 0.45 +1.7
6,121,813 + AO353_28075 0.45 -1.5
6,121,813 + AO353_28075 0.45 -0.1
6,121,813 + AO353_28075 0.45 +0.9
6,121,813 + AO353_28075 0.45 -1.3
6,121,814 - AO353_28075 0.45 -0.7
6,121,814 - AO353_28075 0.45 -1.3
6,121,814 - AO353_28075 0.45 -0.5
6,121,814 - AO353_28075 0.45 +1.3
6,121,814 - AO353_28075 0.45 -1.3
6,121,916 - AO353_28075 0.58 -1.0
6,121,916 - AO353_28075 0.58 +1.7
6,122,077 + AO353_28075 0.79 +0.5
6,122,215 + -1.0
6,122,215 + -1.9
6,122,216 - -3.1
6,122,269 + -1.3
6,122,269 + -0.0
6,122,269 + -0.9
6,122,269 + -0.6
6,122,270 - -1.9
6,122,270 - -1.0
6,122,270 - +2.0
6,122,336 - +0.9

Or see this region's nucleotide sequence