Experiment: Cisplatin 0.006 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_27850 and AO353_27855 overlap by 4 nucleotides AO353_27855 and AO353_27860 are separated by 281 nucleotides AO353_27860 and AO353_27865 overlap by 4 nucleotides
AO353_27850: AO353_27850 - multidrug RND transporter, at 6,073,390 to 6,074,865
_27850
AO353_27855: AO353_27855 - MarR family transcriptional regulator, at 6,074,862 to 6,075,335
_27855
AO353_27860: AO353_27860 - hypothetical protein, at 6,075,617 to 6,079,288
_27860
AO353_27865: AO353_27865 - hypothetical protein, at 6,079,285 to 6,081,012
_27865
Position (kb)
6075
6076
6077
6078
6079
6080 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 6074.792 kb on + strand at 6074.792 kb on + strand at 6074.792 kb on + strand at 6074.793 kb on - strand at 6074.793 kb on - strand at 6074.793 kb on - strand at 6074.793 kb on - strand at 6074.793 kb on - strand at 6074.856 kb on + strand at 6074.997 kb on - strand, within AO353_27855 at 6075.040 kb on - strand, within AO353_27855 at 6075.048 kb on + strand, within AO353_27855 at 6075.348 kb on + strand at 6075.349 kb on - strand at 6075.369 kb on + strand at 6075.369 kb on + strand at 6075.370 kb on - strand at 6075.389 kb on + strand at 6075.412 kb on - strand at 6075.427 kb on + strand at 6075.438 kb on + strand at 6075.438 kb on + strand at 6075.438 kb on + strand at 6075.438 kb on + strand at 6075.439 kb on - strand at 6075.439 kb on - strand at 6075.439 kb on - strand at 6075.439 kb on - strand at 6075.451 kb on + strand at 6075.451 kb on + strand at 6075.451 kb on + strand at 6075.452 kb on - strand at 6075.452 kb on - strand at 6075.618 kb on + strand at 6075.618 kb on + strand at 6075.618 kb on + strand at 6075.618 kb on + strand at 6075.619 kb on - strand at 6075.619 kb on - strand at 6075.619 kb on - strand at 6075.633 kb on + strand at 6075.634 kb on - strand at 6075.634 kb on - strand at 6075.640 kb on + strand at 6075.679 kb on - strand at 6075.679 kb on - strand at 6075.700 kb on - strand at 6075.732 kb on - strand at 6075.960 kb on + strand at 6075.960 kb on + strand at 6075.960 kb on + strand at 6075.961 kb on - strand at 6075.961 kb on - strand at 6075.961 kb on - strand at 6075.961 kb on - strand at 6075.961 kb on - strand at 6076.089 kb on + strand, within AO353_27860 at 6076.153 kb on - strand, within AO353_27860 at 6076.836 kb on - strand, within AO353_27860 at 6076.836 kb on - strand, within AO353_27860 at 6076.983 kb on + strand, within AO353_27860 at 6077.327 kb on + strand, within AO353_27860 at 6077.328 kb on - strand, within AO353_27860 at 6077.328 kb on - strand, within AO353_27860 at 6077.328 kb on - strand, within AO353_27860 at 6077.328 kb on - strand, within AO353_27860 at 6077.328 kb on - strand, within AO353_27860 at 6077.328 kb on - strand, within AO353_27860 at 6077.328 kb on - strand, within AO353_27860 at 6077.328 kb on - strand, within AO353_27860 at 6078.168 kb on + strand, within AO353_27860 at 6078.168 kb on + strand, within AO353_27860 at 6078.168 kb on + strand, within AO353_27860 at 6078.169 kb on - strand, within AO353_27860 at 6078.169 kb on - strand, within AO353_27860 at 6078.169 kb on - strand, within AO353_27860 at 6078.169 kb on - strand, within AO353_27860 at 6078.803 kb on + strand, within AO353_27860 at 6078.803 kb on + strand, within AO353_27860 at 6078.803 kb on + strand, within AO353_27860 at 6078.804 kb on - strand, within AO353_27860 at 6078.804 kb on - strand, within AO353_27860 at 6078.804 kb on - strand, within AO353_27860 at 6078.804 kb on - strand, within AO353_27860 at 6079.269 kb on - strand at 6079.269 kb on - strand at 6079.320 kb on + strand at 6079.321 kb on - strand at 6079.435 kb on - strand at 6079.496 kb on + strand, within AO353_27865 at 6079.496 kb on + strand, within AO353_27865 at 6079.497 kb on - strand, within AO353_27865 at 6079.497 kb on - strand, within AO353_27865 at 6079.520 kb on + strand, within AO353_27865 at 6079.520 kb on + strand, within AO353_27865 at 6079.520 kb on + strand, within AO353_27865 at 6079.521 kb on - strand, within AO353_27865 at 6079.521 kb on - strand, within AO353_27865 at 6079.521 kb on - strand, within AO353_27865 at 6079.521 kb on - strand, within AO353_27865 at 6079.521 kb on - strand, within AO353_27865 at 6079.521 kb on - strand, within AO353_27865 at 6079.571 kb on + strand, within AO353_27865 at 6079.571 kb on + strand, within AO353_27865 at 6079.660 kb on + strand, within AO353_27865 at 6079.660 kb on + strand, within AO353_27865 at 6079.660 kb on + strand, within AO353_27865 at 6079.660 kb on + strand, within AO353_27865 at 6079.660 kb on + strand, within AO353_27865 at 6079.660 kb on + strand, within AO353_27865 at 6079.660 kb on + strand, within AO353_27865 at 6079.660 kb on + strand, within AO353_27865 at 6079.660 kb on + strand, within AO353_27865 at 6079.660 kb on + strand, within AO353_27865 at 6079.660 kb on + strand, within AO353_27865 at 6079.660 kb on + strand, within AO353_27865 at 6079.660 kb on + strand, within AO353_27865 at 6079.661 kb on - strand, within AO353_27865 at 6079.661 kb on - strand, within AO353_27865 at 6079.661 kb on - strand, within AO353_27865 at 6079.730 kb on + strand, within AO353_27865 at 6079.730 kb on + strand at 6079.730 kb on + strand, within AO353_27865 at 6079.730 kb on + strand, within AO353_27865 at 6079.731 kb on - strand, within AO353_27865 at 6079.731 kb on - strand, within AO353_27865 at 6079.731 kb on - strand, within AO353_27865 at 6079.794 kb on - strand, within AO353_27865 at 6079.832 kb on + strand, within AO353_27865 at 6079.833 kb on - strand, within AO353_27865 at 6079.838 kb on + strand, within AO353_27865 at 6079.838 kb on + strand, within AO353_27865 at 6079.838 kb on + strand, within AO353_27865 at 6079.839 kb on - strand, within AO353_27865 at 6079.839 kb on - strand, within AO353_27865 at 6079.839 kb on - strand, within AO353_27865 at 6079.863 kb on + strand, within AO353_27865 at 6079.863 kb on + strand, within AO353_27865 at 6079.864 kb on - strand, within AO353_27865 at 6079.864 kb on - strand, within AO353_27865 at 6079.864 kb on - strand, within AO353_27865 at 6079.892 kb on + strand, within AO353_27865 at 6080.072 kb on + strand, within AO353_27865 at 6080.072 kb on + strand, within AO353_27865 at 6080.073 kb on - strand, within AO353_27865 at 6080.124 kb on - strand, within AO353_27865 at 6080.124 kb on - strand, within AO353_27865 at 6080.124 kb on - strand, within AO353_27865 at 6080.254 kb on + strand, within AO353_27865
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.006 mg/ml remove 6,074,792 + -0.3 6,074,792 + -2.3 6,074,792 + -2.3 6,074,793 - -0.9 6,074,793 - -1.9 6,074,793 - -0.0 6,074,793 - -0.3 6,074,793 - -3.3 6,074,856 + -2.3 6,074,997 - AO353_27855 0.28 -0.2 6,075,040 - AO353_27855 0.38 -0.1 6,075,048 + AO353_27855 0.39 +3.4 6,075,348 + +2.1 6,075,349 - -3.3 6,075,369 + -3.1 6,075,369 + -2.6 6,075,370 - +0.4 6,075,389 + -1.3 6,075,412 - -1.3 6,075,427 + +1.0 6,075,438 + +0.7 6,075,438 + -2.3 6,075,438 + +0.4 6,075,438 + -0.9 6,075,439 - -1.3 6,075,439 - -2.9 6,075,439 - -3.3 6,075,439 - +0.0 6,075,451 + -0.3 6,075,451 + -2.6 6,075,451 + -0.9 6,075,452 - -0.3 6,075,452 - -0.3 6,075,618 + -1.3 6,075,618 + -1.7 6,075,618 + +1.0 6,075,618 + -0.3 6,075,619 - -2.3 6,075,619 - -0.3 6,075,619 - -0.1 6,075,633 + -2.6 6,075,634 - -0.9 6,075,634 - -1.3 6,075,640 + +0.4 6,075,679 - -1.3 6,075,679 - -0.3 6,075,700 - -1.3 6,075,732 - -0.8 6,075,960 + -1.3 6,075,960 + -0.3 6,075,960 + +0.9 6,075,961 - +0.9 6,075,961 - -1.3 6,075,961 - -1.3 6,075,961 - +2.5 6,075,961 - +1.7 6,076,089 + AO353_27860 0.13 +2.3 6,076,153 - AO353_27860 0.15 -1.3 6,076,836 - AO353_27860 0.33 +0.4 6,076,836 - AO353_27860 0.33 +2.3 6,076,983 + AO353_27860 0.37 +0.5 6,077,327 + AO353_27860 0.47 +1.5 6,077,328 - AO353_27860 0.47 +2.6 6,077,328 - AO353_27860 0.47 +2.6 6,077,328 - AO353_27860 0.47 +2.0 6,077,328 - AO353_27860 0.47 -2.3 6,077,328 - AO353_27860 0.47 +0.3 6,077,328 - AO353_27860 0.47 +2.1 6,077,328 - AO353_27860 0.47 +0.0 6,077,328 - AO353_27860 0.47 -1.3 6,078,168 + AO353_27860 0.69 +1.0 6,078,168 + AO353_27860 0.69 +2.3 6,078,168 + AO353_27860 0.69 -1.9 6,078,169 - AO353_27860 0.69 -0.3 6,078,169 - AO353_27860 0.69 -1.3 6,078,169 - AO353_27860 0.69 -0.3 6,078,169 - AO353_27860 0.69 -2.9 6,078,803 + AO353_27860 0.87 +1.3 6,078,803 + AO353_27860 0.87 -3.6 6,078,803 + AO353_27860 0.87 -0.9 6,078,804 - AO353_27860 0.87 +0.4 6,078,804 - AO353_27860 0.87 +0.1 6,078,804 - AO353_27860 0.87 -0.6 6,078,804 - AO353_27860 0.87 -0.3 6,079,269 - +2.2 6,079,269 - -0.9 6,079,320 + -0.3 6,079,321 - +0.7 6,079,435 - +1.7 6,079,496 + AO353_27865 0.12 +1.1 6,079,496 + AO353_27865 0.12 +2.3 6,079,497 - AO353_27865 0.12 -1.3 6,079,497 - AO353_27865 0.12 -0.1 6,079,520 + AO353_27865 0.14 -2.3 6,079,520 + AO353_27865 0.14 +0.3 6,079,520 + AO353_27865 0.14 +2.9 6,079,521 - AO353_27865 0.14 +1.4 6,079,521 - AO353_27865 0.14 -0.7 6,079,521 - AO353_27865 0.14 -1.9 6,079,521 - AO353_27865 0.14 +1.6 6,079,521 - AO353_27865 0.14 -0.7 6,079,521 - AO353_27865 0.14 -2.3 6,079,571 + AO353_27865 0.17 +2.4 6,079,571 + AO353_27865 0.17 +2.9 6,079,660 + AO353_27865 0.22 -1.3 6,079,660 + AO353_27865 0.22 -0.3 6,079,660 + AO353_27865 0.22 +0.0 6,079,660 + AO353_27865 0.22 -0.3 6,079,660 + AO353_27865 0.22 +0.7 6,079,660 + AO353_27865 0.22 +1.2 6,079,660 + AO353_27865 0.22 -0.3 6,079,660 + AO353_27865 0.22 -2.6 6,079,660 + AO353_27865 0.22 +0.5 6,079,660 + AO353_27865 0.22 -0.3 6,079,660 + AO353_27865 0.22 -2.6 6,079,660 + AO353_27865 0.22 +1.9 6,079,660 + AO353_27865 0.22 +1.7 6,079,661 - AO353_27865 0.22 -2.3 6,079,661 - AO353_27865 0.22 -1.9 6,079,661 - AO353_27865 0.22 +0.1 6,079,730 + AO353_27865 0.26 +3.8 6,079,730 + -1.3 6,079,730 + AO353_27865 0.26 +2.3 6,079,730 + AO353_27865 0.26 -1.3 6,079,731 - AO353_27865 0.26 +1.1 6,079,731 - AO353_27865 0.26 +1.0 6,079,731 - AO353_27865 0.26 -0.0 6,079,794 - AO353_27865 0.29 -1.9 6,079,832 + AO353_27865 0.32 +0.1 6,079,833 - AO353_27865 0.32 +1.9 6,079,838 + AO353_27865 0.32 +0.9 6,079,838 + AO353_27865 0.32 -1.2 6,079,838 + AO353_27865 0.32 +0.9 6,079,839 - AO353_27865 0.32 +0.3 6,079,839 - AO353_27865 0.32 +0.7 6,079,839 - AO353_27865 0.32 +0.7 6,079,863 + AO353_27865 0.33 +0.4 6,079,863 + AO353_27865 0.33 -1.9 6,079,864 - AO353_27865 0.34 +0.7 6,079,864 - AO353_27865 0.34 -2.3 6,079,864 - AO353_27865 0.34 +1.0 6,079,892 + AO353_27865 0.35 -1.3 6,080,072 + AO353_27865 0.46 -0.1 6,080,072 + AO353_27865 0.46 -0.3 6,080,073 - AO353_27865 0.46 -2.6 6,080,124 - AO353_27865 0.49 +1.0 6,080,124 - AO353_27865 0.49 +3.2 6,080,124 - AO353_27865 0.49 -3.3 6,080,254 + AO353_27865 0.56 +0.7
Or see this region's nucleotide sequence