Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_26070

Experiment: Cisplatin 0.006 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_26065 and AO353_26070 overlap by 1 nucleotidesAO353_26070 and AO353_26075 are separated by 834 nucleotides AO353_26065: AO353_26065 - chitinase, at 5,738,322 to 5,739,788 _26065 AO353_26070: AO353_26070 - hypothetical protein, at 5,739,788 to 5,740,189 _26070 AO353_26075: AO353_26075 - FAD-binding protein, at 5,741,024 to 5,742,712 _26075 Position (kb) 5739 5740 5741Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 5738.803 kb on + strand, within AO353_26065at 5738.812 kb on + strand, within AO353_26065at 5738.813 kb on - strand, within AO353_26065at 5738.813 kb on - strand, within AO353_26065at 5738.813 kb on - strand, within AO353_26065at 5738.954 kb on - strand, within AO353_26065at 5738.960 kb on + strand, within AO353_26065at 5739.022 kb on + strandat 5739.022 kb on + strand, within AO353_26065at 5739.022 kb on + strand, within AO353_26065at 5739.023 kb on - strand, within AO353_26065at 5739.058 kb on + strand, within AO353_26065at 5739.058 kb on + strand, within AO353_26065at 5739.058 kb on + strand, within AO353_26065at 5739.058 kb on + strand, within AO353_26065at 5739.059 kb on - strand, within AO353_26065at 5739.059 kb on - strand, within AO353_26065at 5739.059 kb on - strand, within AO353_26065at 5739.059 kb on - strand, within AO353_26065at 5739.059 kb on - strand, within AO353_26065at 5739.160 kb on + strand, within AO353_26065at 5739.160 kb on + strand, within AO353_26065at 5739.160 kb on + strand, within AO353_26065at 5739.160 kb on + strand, within AO353_26065at 5739.160 kb on + strand, within AO353_26065at 5739.161 kb on - strandat 5739.161 kb on - strand, within AO353_26065at 5739.161 kb on - strand, within AO353_26065at 5739.161 kb on - strand, within AO353_26065at 5739.161 kb on - strand, within AO353_26065at 5739.163 kb on + strand, within AO353_26065at 5739.163 kb on + strand, within AO353_26065at 5739.164 kb on - strand, within AO353_26065at 5739.164 kb on - strand, within AO353_26065at 5739.184 kb on + strand, within AO353_26065at 5739.184 kb on + strand, within AO353_26065at 5739.185 kb on - strand, within AO353_26065at 5739.185 kb on - strand, within AO353_26065at 5739.185 kb on - strand, within AO353_26065at 5739.187 kb on + strand, within AO353_26065at 5739.188 kb on - strand, within AO353_26065at 5739.217 kb on + strand, within AO353_26065at 5739.217 kb on + strand, within AO353_26065at 5739.217 kb on + strand, within AO353_26065at 5739.217 kb on + strand, within AO353_26065at 5739.217 kb on + strand, within AO353_26065at 5739.217 kb on + strand, within AO353_26065at 5739.218 kb on - strand, within AO353_26065at 5739.218 kb on - strand, within AO353_26065at 5739.218 kb on - strand, within AO353_26065at 5739.218 kb on - strand, within AO353_26065at 5739.218 kb on - strand, within AO353_26065at 5739.218 kb on - strand, within AO353_26065at 5739.218 kb on - strand, within AO353_26065at 5739.218 kb on - strand, within AO353_26065at 5739.218 kb on - strand, within AO353_26065at 5739.218 kb on - strand, within AO353_26065at 5739.218 kb on - strand, within AO353_26065at 5739.218 kb on - strand, within AO353_26065at 5739.218 kb on - strand, within AO353_26065at 5739.218 kb on - strand, within AO353_26065at 5739.218 kb on - strand, within AO353_26065at 5739.239 kb on - strand, within AO353_26065at 5739.289 kb on + strand, within AO353_26065at 5739.289 kb on + strand, within AO353_26065at 5739.290 kb on - strandat 5739.290 kb on - strand, within AO353_26065at 5739.290 kb on - strand, within AO353_26065at 5739.290 kb on - strand, within AO353_26065at 5739.290 kb on - strand, within AO353_26065at 5739.290 kb on - strand, within AO353_26065at 5739.510 kb on + strand, within AO353_26065at 5739.511 kb on - strand, within AO353_26065at 5739.511 kb on - strand, within AO353_26065at 5739.511 kb on - strand, within AO353_26065at 5739.517 kb on - strand, within AO353_26065at 5739.517 kb on - strand, within AO353_26065at 5739.517 kb on - strand, within AO353_26065at 5739.517 kb on - strand, within AO353_26065at 5739.550 kb on + strand, within AO353_26065at 5739.550 kb on + strand, within AO353_26065at 5739.550 kb on + strand, within AO353_26065at 5739.550 kb on + strand, within AO353_26065at 5739.551 kb on - strand, within AO353_26065at 5739.551 kb on - strand, within AO353_26065at 5739.551 kb on - strand, within AO353_26065at 5739.551 kb on - strand, within AO353_26065at 5739.551 kb on - strand, within AO353_26065at 5739.564 kb on - strand, within AO353_26065at 5739.607 kb on + strand, within AO353_26065at 5739.607 kb on + strand, within AO353_26065at 5739.608 kb on - strand, within AO353_26065at 5739.619 kb on - strand, within AO353_26065at 5739.619 kb on - strand, within AO353_26065at 5739.619 kb on - strand, within AO353_26065at 5739.633 kb on + strand, within AO353_26065at 5739.633 kb on + strand, within AO353_26065at 5739.634 kb on - strand, within AO353_26065at 5739.634 kb on - strand, within AO353_26065at 5739.634 kb on - strand, within AO353_26065at 5739.634 kb on - strand, within AO353_26065at 5739.634 kb on - strand, within AO353_26065at 5739.634 kb on - strand, within AO353_26065at 5739.634 kb on - strand, within AO353_26065at 5739.636 kb on - strand, within AO353_26065at 5739.636 kb on - strand, within AO353_26065at 5739.750 kb on + strandat 5739.751 kb on - strandat 5739.841 kb on + strand, within AO353_26070at 5740.048 kb on + strand, within AO353_26070at 5740.119 kb on + strand, within AO353_26070at 5740.119 kb on + strand, within AO353_26070at 5740.120 kb on - strand, within AO353_26070at 5740.120 kb on - strand, within AO353_26070at 5740.122 kb on - strand, within AO353_26070at 5740.188 kb on - strandat 5740.258 kb on + strandat 5740.259 kb on - strandat 5740.261 kb on - strandat 5740.491 kb on - strandat 5740.520 kb on - strandat 5740.591 kb on + strandat 5740.657 kb on + strandat 5740.657 kb on + strandat 5740.657 kb on + strandat 5740.657 kb on + strandat 5740.657 kb on + strandat 5740.658 kb on - strandat 5740.658 kb on - strandat 5740.658 kb on - strandat 5740.658 kb on - strandat 5740.658 kb on - strandat 5740.658 kb on - strandat 5740.658 kb on - strandat 5740.693 kb on - strandat 5740.696 kb on - strandat 5740.781 kb on + strandat 5740.781 kb on + strandat 5740.781 kb on + strandat 5740.781 kb on + strandat 5740.781 kb on + strandat 5740.781 kb on + strandat 5740.781 kb on + strandat 5740.781 kb on + strandat 5740.781 kb on + strandat 5740.782 kb on - strandat 5740.782 kb on - strandat 5740.782 kb on - strandat 5740.782 kb on - strandat 5740.782 kb on - strandat 5740.784 kb on + strandat 5740.784 kb on + strandat 5740.827 kb on + strandat 5740.844 kb on + strandat 5740.868 kb on - strandat 5740.919 kb on + strandat 5740.920 kb on - strandat 5740.920 kb on - strandat 5741.072 kb on - strandat 5741.150 kb on + strandat 5741.150 kb on + strandat 5741.151 kb on - strandat 5741.155 kb on - strandat 5741.155 kb on - strandat 5741.155 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.006 mg/ml
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5,738,803 + AO353_26065 0.33 +1.5
5,738,812 + AO353_26065 0.33 -0.4
5,738,813 - AO353_26065 0.33 -2.0
5,738,813 - AO353_26065 0.33 -0.4
5,738,813 - AO353_26065 0.33 +0.4
5,738,954 - AO353_26065 0.43 -1.4
5,738,960 + AO353_26065 0.43 +1.0
5,739,022 + -0.4
5,739,022 + AO353_26065 0.48 -1.4
5,739,022 + AO353_26065 0.48 +3.3
5,739,023 - AO353_26065 0.48 -1.4
5,739,058 + AO353_26065 0.50 -2.0
5,739,058 + AO353_26065 0.50 -1.4
5,739,058 + AO353_26065 0.50 -1.4
5,739,058 + AO353_26065 0.50 -0.4
5,739,059 - AO353_26065 0.50 -1.1
5,739,059 - AO353_26065 0.50 +1.2
5,739,059 - AO353_26065 0.50 -0.4
5,739,059 - AO353_26065 0.50 +1.8
5,739,059 - AO353_26065 0.50 +0.4
5,739,160 + AO353_26065 0.57 -2.0
5,739,160 + AO353_26065 0.57 +2.3
5,739,160 + AO353_26065 0.57 -0.4
5,739,160 + AO353_26065 0.57 -1.1
5,739,160 + AO353_26065 0.57 +2.6
5,739,161 - -1.4
5,739,161 - AO353_26065 0.57 -0.5
5,739,161 - AO353_26065 0.57 -1.4
5,739,161 - AO353_26065 0.57 +1.9
5,739,161 - AO353_26065 0.57 +1.0
5,739,163 + AO353_26065 0.57 -2.4
5,739,163 + AO353_26065 0.57 +2.9
5,739,164 - AO353_26065 0.57 -1.4
5,739,164 - AO353_26065 0.57 -0.4
5,739,184 + AO353_26065 0.59 -2.0
5,739,184 + AO353_26065 0.59 -0.4
5,739,185 - AO353_26065 0.59 +1.5
5,739,185 - AO353_26065 0.59 -2.4
5,739,185 - AO353_26065 0.59 -0.1
5,739,187 + AO353_26065 0.59 -0.8
5,739,188 - AO353_26065 0.59 -1.7
5,739,217 + AO353_26065 0.61 -0.0
5,739,217 + AO353_26065 0.61 -0.8
5,739,217 + AO353_26065 0.61 -2.0
5,739,217 + AO353_26065 0.61 +0.5
5,739,217 + AO353_26065 0.61 +1.4
5,739,217 + AO353_26065 0.61 +2.4
5,739,218 - AO353_26065 0.61 +0.4
5,739,218 - AO353_26065 0.61 -2.4
5,739,218 - AO353_26065 0.61 -1.4
5,739,218 - AO353_26065 0.61 -0.4
5,739,218 - AO353_26065 0.61 -3.0
5,739,218 - AO353_26065 0.61 -1.4
5,739,218 - AO353_26065 0.61 +0.2
5,739,218 - AO353_26065 0.61 +0.4
5,739,218 - AO353_26065 0.61 -0.4
5,739,218 - AO353_26065 0.61 +1.2
5,739,218 - AO353_26065 0.61 -1.4
5,739,218 - AO353_26065 0.61 -3.0
5,739,218 - AO353_26065 0.61 +0.0
5,739,218 - AO353_26065 0.61 +1.2
5,739,218 - AO353_26065 0.61 -2.0
5,739,239 - AO353_26065 0.63 -0.4
5,739,289 + AO353_26065 0.66 -0.8
5,739,289 + AO353_26065 0.66 +2.4
5,739,290 - -0.4
5,739,290 - AO353_26065 0.66 -0.4
5,739,290 - AO353_26065 0.66 +3.5
5,739,290 - AO353_26065 0.66 -2.4
5,739,290 - AO353_26065 0.66 -1.1
5,739,290 - AO353_26065 0.66 -1.7
5,739,510 + AO353_26065 0.81 +2.4
5,739,511 - AO353_26065 0.81 +3.5
5,739,511 - AO353_26065 0.81 -0.4
5,739,511 - AO353_26065 0.81 +1.2
5,739,517 - AO353_26065 0.81 -3.0
5,739,517 - AO353_26065 0.81 +1.6
5,739,517 - AO353_26065 0.81 -0.4
5,739,517 - AO353_26065 0.81 +0.8
5,739,550 + AO353_26065 0.84 -1.1
5,739,550 + AO353_26065 0.84 -0.8
5,739,550 + AO353_26065 0.84 -1.4
5,739,550 + AO353_26065 0.84 -2.4
5,739,551 - AO353_26065 0.84 +1.2
5,739,551 - AO353_26065 0.84 -1.7
5,739,551 - AO353_26065 0.84 +1.2
5,739,551 - AO353_26065 0.84 -0.8
5,739,551 - AO353_26065 0.84 -1.4
5,739,564 - AO353_26065 0.85 +3.5
5,739,607 + AO353_26065 0.88 -1.0
5,739,607 + AO353_26065 0.88 +1.2
5,739,608 - AO353_26065 0.88 -2.7
5,739,619 - AO353_26065 0.88 -2.4
5,739,619 - AO353_26065 0.88 -1.4
5,739,619 - AO353_26065 0.88 +1.9
5,739,633 + AO353_26065 0.89 -2.4
5,739,633 + AO353_26065 0.89 -0.4
5,739,634 - AO353_26065 0.89 -0.6
5,739,634 - AO353_26065 0.89 -3.2
5,739,634 - AO353_26065 0.89 -2.0
5,739,634 - AO353_26065 0.89 -0.9
5,739,634 - AO353_26065 0.89 -0.4
5,739,634 - AO353_26065 0.89 -0.4
5,739,634 - AO353_26065 0.89 +1.9
5,739,636 - AO353_26065 0.90 +2.1
5,739,636 - AO353_26065 0.90 +3.3
5,739,750 + -0.4
5,739,751 - +1.0
5,739,841 + AO353_26070 0.13 +0.2
5,740,048 + AO353_26070 0.65 -2.7
5,740,119 + AO353_26070 0.82 +0.2
5,740,119 + AO353_26070 0.82 -2.4
5,740,120 - AO353_26070 0.83 -0.4
5,740,120 - AO353_26070 0.83 -2.2
5,740,122 - AO353_26070 0.83 -1.4
5,740,188 - +1.3
5,740,258 + -0.2
5,740,259 - +0.0
5,740,261 - -0.4
5,740,491 - -1.2
5,740,520 - -2.4
5,740,591 + -0.2
5,740,657 + +1.8
5,740,657 + -0.4
5,740,657 + -0.0
5,740,657 + -1.4
5,740,657 + -0.4
5,740,658 - -0.2
5,740,658 - -2.0
5,740,658 - -0.4
5,740,658 - +1.2
5,740,658 - -2.0
5,740,658 - +1.6
5,740,658 - +1.8
5,740,693 - +1.2
5,740,696 - +0.6
5,740,781 + +4.0
5,740,781 + -0.4
5,740,781 + -2.4
5,740,781 + +0.0
5,740,781 + -2.4
5,740,781 + -1.4
5,740,781 + +1.9
5,740,781 + -1.4
5,740,781 + -1.0
5,740,782 - +0.4
5,740,782 - +0.2
5,740,782 - -1.1
5,740,782 - -0.4
5,740,782 - -0.4
5,740,784 + -2.0
5,740,784 + -0.6
5,740,827 + -2.0
5,740,844 + +1.0
5,740,868 - -0.4
5,740,919 + +0.1
5,740,920 - -2.0
5,740,920 - -0.4
5,741,072 - +0.3
5,741,150 + +0.9
5,741,150 + +1.4
5,741,151 - -0.4
5,741,155 - -3.7
5,741,155 - -3.0
5,741,155 - -0.4

Or see this region's nucleotide sequence